FvH4_6g04420

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000126
Physical Location & Seq
Forward (+)
2409699 .. 2413287
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04420.t3

Sequence Viewer

Length: 1983 bp
ATGGAAGAGAAGTTCTCCGAGCTGAACCACAACCCTATGTCCGAGTCCTTCGAGACTCTTCGAGGCCGCTTGAAGCAAATGGGGGACCAGTTCGTCTCGACCCGGGCCGCGCTCCAGACCCGGTTCGAGGAGCTCCGGAGCCGCGAGGAGGCAATCGGGCGCCGGGAGAAGCTTCTGGAAGAGAAAGAGTCCGGGTTTAGGTCGAAGGAGTCGGAGCTGGAGGCAATCGAGGAGGCCATTACAGAGAAGCTTCTGGATTTCGAGGAAGGTAAGACTCGTTTGGAAAGTCTTGGAATTTTGATTAGGGAGAAAGAGATGGAGTGTGATTTGATGCGTAATCGAGTCGAAAAGGGGGCTAGGGATTTGGCTAGGGTTGAGGAAATGGTGAGGAAATGTATGGAGGATTGGAGGTGTATGGTGGAATTGAAAGAGAGGGAGCTTGAGGAGGGGCTGTTTGAGAAGCTTAGATTGAAAGAGGAATTGTTAGAACCAAATATGGAGGAGCTTCGTGTTATCGCGAATGATGTGCAAGAGTGCATCAATGAAGCTCAGAGGAAGGAGAGGGAACTGGAATCGAAAGCTAAGGAACTTGAGTTGGCTGAGGTGAGGGTGAACGAGTGCCGAAATGAGGTTCAGTGGAAAGAGAGACGAGTGGAGTCGGCTGAGAGGAGGGTTGAGGAACGGCGCAATCAGGTGGAATTGAAAGAGAAGCATTTGTGTTCGATGGAGAAGTTGATAGAAGATAACAAAAAGGGTTTGGACTTGCTCATGAAGACTGCAGAGAAGCGCCAGAAAGACTTGGAATCACTCCAGAAGTCGGTGGAAGTGCGTGAAAGGAATTTGGATTTGGTGTCTGATGAACTTAAAAGGAAAGAGAGGGAACTTCAACAGCAGGCTGAAGCGCTTAAATTGAAGCGTGCGCAGTTTGATTCTCAAGTGACGATTCAGCAGTTGGAATATATGCCTGGGGATAACAATGCAATTATTCCCTCACCTGTGACCAACATCATTTCTTCCCTTGTCAAAGCGGAGGAACCAGACTCTTCACTTCCCAAAAATTCAGCAAGTTTAGTTTTCTCAAATCTTCAACCAATTGCCACCAGTGATGAAGGATATGTCCCAGGGTTTCTAAATAAGAATTCAAGTGGGAATAATTTCATACAGAATGCATTGGCTAACTCTCTTCGGTTGGTACCAGACCCAGCTAAACTTGTGTTGAATAACATGCAAAAATCCCTTGTTCAGTACTTAACAAATGGATACTTTGAAGAAAGTTTAATGTCAGGTAACATTTCCATATTGATGGAGCTAATGAGTATGTCCCCAAATATAGGATCTCATCTGAAAGTAGATGCAACATATCTAGCACTCAAGTGGAAGATAAAGATGACAGGCAATTCCGAAAATTCAGTGGAGAGTTTGGCATTCTTGTTGTTTCTAGCTACTTATGGAATTCTTTATATGTTGAATGAAGATGAGATTGTAAAGCTTCTTGGGTTGATTTCTCAGAATAAAAGGGCTGGAGAATTATGTCAGACACCTGCTTTTGCAGTTATGATTGCCGATCTTATTCGCAATCTTATTGAAAAGAAGCGGCTGCTTGAGGCTGTTAAATGTATTTGCATGTTCAAGTTAAGTGACAAGCTCCCTCTAGTACCACTTCTAGAAGAGTATGTGCGGGAGACAATGAAGTGTTCTGAAGCAATTTGTGGGTTAAGGAATACTCCTGATGAAAAGGTCAAGTTTTTAATAAACCAAATAGCTGATGCTAGAGTTTTGGTTCAATGCCTCAAAGATTACAACCTTGGATACCTGTCCAATGTCATTCAAATACTAATAGTTCAGCTGGAAACACTGGAAGAGAGTTGGAGACTTTTCTTGCCTCATCTTTGTCCCAGCATTGTTGGGCAACAAGAGCACAGGAAAAGAAAGAAGCATAACAATAGCACTTATGATCCTGAGAGTCATTCACAACAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

661

Amino Acids

76.3

Weight (kDa)

5.39

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1549
AasI GACNNNNNNGTC 1 cut(s) 92
Acc16I TGCGCA 1 cut(s) 921
Acc36I ACCTGC 1 cut(s) 1549
Acc65I GGTACC 1 cut(s) 1192
AccB1I GGYRCC 2 cut(s) 159, 1192
AccII CGCG 3 cut(s) 110, 144, 518
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 6 cut(s) 67, 108, 142, 1028, 1594, 1678
AclWI GGATC 2 cut(s) 1342, 1949
AcsI RAATTY 6 cut(s) 294, 838, 1057, 1138, 1405, 1452
AcuI CTGAAG 2 cut(s) 918, 1719
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 3 cut(s) 1194, 1247, 1656
AfeI AGCGCT 1 cut(s) 903
AfiI CCNNNNNNNGG 6 cut(s) 127, 148, 198, 628, 817, 1331
AjnI CCWGG 2 cut(s) 964, 1120
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AleI CACNNNNGTG 1 cut(s) 1372
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw21I GWGCWC 2 cut(s) 135, 1920
Alw26I GTCTC 5 cut(s) 47, 100, 640, 1676, 1864
AlwI GGATC 2 cut(s) 1342, 1949
Ama87I CYCGRG 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 135
Aor51HI AGCGCT 1 cut(s) 903
AoxI GGCC 3 cut(s) 64, 105, 234
ApeKI GCWGC 1 cut(s) 1597
ApoI RAATTY 6 cut(s) 294, 838, 1057, 1138, 1405, 1452
Asp700I GAANNNNTTC 1 cut(s) 1154
Asp718I GGTACC 1 cut(s) 1192
AspLEI GCGC 6 cut(s) 112, 162, 687, 789, 904, 922
AspS9I GGNCC 2 cut(s) 85, 105
AsuC2I CCSGG 5 cut(s) 103, 104, 121, 164, 193
AsuHPI GGTGA 4 cut(s) 397, 616, 622, 984
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 1 cut(s) 85
BanI GGYRCC 2 cut(s) 159, 1192
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 2 cut(s) 135, 1920
BbvCI CCTCAGC 1 cut(s) 600
BbvI GCAGC 1 cut(s) 1584
BccI CCATC 3 cut(s) 310, 718, 1297
BceAI ACGGC 2 cut(s) 698, 1963
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BciT130I CCWGG 2 cut(s) 966, 1122
BciVI GTATCC 2 cut(s) 1253, 1802
BcnI CCSGG 5 cut(s) 103, 104, 121, 164, 193
BcoDI GTCTC 5 cut(s) 47, 100, 640, 1676, 1864
BfaI CTAG 7 cut(s) 357, 369, 1364, 1439, 1652, 1664, 1770
BfmI CTRYAG 1 cut(s) 777
BfoI RGCGCY 3 cut(s) 163, 790, 905
BfuAI ACCTGC 1 cut(s) 1549
BfuI GTATCC 2 cut(s) 1253, 1802
BisI GCNGC 5 cut(s) 67, 108, 142, 1595, 1598
BlsI GCNGC 5 cut(s) 68, 109, 143, 1596, 1599
BmcAI AGTACT 1 cut(s) 1247
Bme1390I CCNGG 7 cut(s) 103, 104, 121, 164, 193, 966, 1122
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 85, 105
BmiI GGNNCC 5 cut(s) 86, 140, 161, 1035, 1194
BmrFI CCNGG 7 cut(s) 103, 104, 121, 164, 193, 966, 1122
BmsI GCATC 4 cut(s) 321, 546, 1342, 1756
BpiI GAAGAC 1 cut(s) 779
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 4 cut(s) 98, 239, 794, 1542
Bpu10I CCTNAGC 2 cut(s) 582, 600
BpuEI CTTGAG 5 cut(s) 461, 611, 918, 1355, 1622
BpuMI CCSGG 5 cut(s) 103, 104, 121, 164, 193
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 5 cut(s) 102, 965, 1120, 1121, 1804
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 6 cut(s) 127, 148, 198, 628, 817, 1331
Bse1I ACTGG 4 cut(s) 88, 573, 1101, 1860
BseAI TCCGGA 1 cut(s) 135
BseBI CCWGG 2 cut(s) 966, 1122
BseDI CCNNGG 5 cut(s) 102, 965, 1120, 1121, 1804
BseLI CCNNNNNNNGG 6 cut(s) 127, 148, 198, 628, 817, 1331
BseMII CTCAG 5 cut(s) 563, 591, 654, 1520, 1950
BseNI ACTGG 4 cut(s) 88, 573, 1101, 1860
BseRI GAGGAG 6 cut(s) 143, 161, 245, 458, 515, 682
BseXI GCAGC 1 cut(s) 1584
BseYI CCCAGC 2 cut(s) 1201, 1895
Bsh1236I CGCG 3 cut(s) 110, 144, 518
BshFI GGCC 3 cut(s) 66, 107, 236
BshNI GGYRCC 2 cut(s) 159, 1192
BsiHKAI GWGCWC 2 cut(s) 135, 1920
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 5 cut(s) 103, 121, 136, 163, 192
BslFI GGGAC 4 cut(s) 98, 1103, 1306, 1878
BslI CCNNNNNNNGG 6 cut(s) 127, 148, 198, 628, 817, 1331
BsmAI GTCTC 5 cut(s) 47, 100, 640, 1676, 1864
BsmBI CGTCTC 2 cut(s) 100, 640
BsmFI GGGAC 4 cut(s) 98, 1103, 1306, 1878
BsmI GAATGC 2 cut(s) 1171, 1424
BsnI GGCC 3 cut(s) 66, 107, 236
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 135, 1920
Bsp13I TCCGGA 1 cut(s) 135
Bsp143I GATC 3 cut(s) 1334, 1564, 1954
Bsp68I TCGCGA 1 cut(s) 518
BspACI CCGC 6 cut(s) 67, 108, 142, 1028, 1594, 1678
BspANI GGCC 3 cut(s) 66, 107, 236
BspCNI CTCAG 5 cut(s) 562, 592, 655, 1519, 1951
BspEI TCCGGA 1 cut(s) 135
BspFNI CGCG 3 cut(s) 110, 144, 518
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 5 cut(s) 86, 140, 161, 1035, 1194
BspMAI CTGCAG 1 cut(s) 781
BspMI ACCTGC 1 cut(s) 1549
BspPI GGATC 2 cut(s) 1342, 1949
BspT107I GGYRCC 2 cut(s) 159, 1192
BsrI ACTGG 4 cut(s) 88, 573, 1101, 1860
BssECI CCNNGG 5 cut(s) 102, 965, 1120, 1121, 1804
BssMI GATC 3 cut(s) 1334, 1564, 1954
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 1804
Bst2UI CCWGG 2 cut(s) 966, 1122
Bst6I CTCTTC 6 cut(s) 63, 174, 1048, 1188, 1662, 1854
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 894, 918
BstDEI CTNAG 7 cut(s) 464, 549, 582, 600, 663, 1506, 1959
BstFNI CGCG 3 cut(s) 110, 144, 518
BstH2I RGCGCY 3 cut(s) 163, 790, 905
BstHHI GCGC 6 cut(s) 112, 162, 687, 789, 904, 922
BstKTI GATC 3 cut(s) 1337, 1567, 1957
BstMAI GTCTC 5 cut(s) 47, 100, 640, 1676, 1864
BstMBI GATC 3 cut(s) 1334, 1564, 1954
BstMWI GCNNNNNNNGC 1 cut(s) 1915
BstNI CCWGG 2 cut(s) 966, 1122
BstNSI RCATGY 2 cut(s) 1228, 1627
BstSCI CCNGG 7 cut(s) 101, 102, 119, 162, 191, 964, 1120
BstSFI CTRYAG 1 cut(s) 777
BstUI CGCG 3 cut(s) 110, 144, 518
BstV1I GCAGC 1 cut(s) 1584
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 1 cut(s) 1334
BstXI CCANNNNNNTGG 1 cut(s) 1303
BstYI RGATCY 1 cut(s) 1334
BsuI GTATCC 2 cut(s) 1253, 1802
BsuRI GGCC 3 cut(s) 66, 107, 236
BtsIMutI CAGTG 4 cut(s) 641, 1108, 1416, 1853
BtuMI TCGCGA 1 cut(s) 518
BveI ACCTGC 1 cut(s) 1549
Cac8I GCNNGC 2 cut(s) 894, 918
CciI TCATGA 1 cut(s) 768
CfoI GCGC 6 cut(s) 112, 162, 687, 789, 904, 922
Cfr13I GGNCC 2 cut(s) 85, 105
Cfr9I CCCGGG 1 cut(s) 102
Csp6I GTAC 3 cut(s) 1193, 1246, 1655
CviAII CATG 3 cut(s) 769, 1225, 1624
CviQI GTAC 3 cut(s) 1193, 1246, 1655
DdeI CTNAG 7 cut(s) 464, 549, 582, 600, 663, 1506, 1959
DinI GGCGCC 1 cut(s) 161
DpnI GATC 3 cut(s) 1336, 1566, 1956
DpnII GATC 3 cut(s) 1334, 1564, 1954
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 6 cut(s) 63, 174, 1048, 1188, 1662, 1854
EarI CTCTTC 6 cut(s) 63, 174, 1048, 1188, 1662, 1854
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 1804
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 85
Eco47III AGCGCT 1 cut(s) 903
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 918, 1719
Eco88I CYCGRG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 133
EcoRI GAATTC 2 cut(s) 1138, 1452
EcoRII CCWGG 2 cut(s) 964, 1120
EcoT14I CCWWGG 1 cut(s) 1804
EcoT22I ATGCAT 1 cut(s) 1171
EcoT38I GRGCYC 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 1804
Esp3I CGTCTC 2 cut(s) 100, 640
FaeI CATG 3 cut(s) 772, 1228, 1627
FaqI GGGAC 4 cut(s) 98, 1103, 1306, 1878
FatI CATG 3 cut(s) 768, 1224, 1623
FauI CCCGC 1 cut(s) 1671
Fnu4HI GCNGC 5 cut(s) 67, 108, 142, 1595, 1598
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 5 cut(s) 67, 108, 142, 1595, 1598
FspBI CTAG 7 cut(s) 357, 369, 1364, 1439, 1652, 1664, 1770
FspI TGCGCA 1 cut(s) 921
GlaI GCGC 6 cut(s) 111, 161, 686, 788, 903, 921
GluI GCNGC 5 cut(s) 67, 108, 142, 1595, 1598
GsaI CCCAGC 2 cut(s) 1205, 1899
GsuI CTGGAG 4 cut(s) 98, 239, 794, 1542
HaeII RGCGCY 3 cut(s) 163, 790, 905
HaeIII GGCC 3 cut(s) 66, 107, 236
HapII CCGG 5 cut(s) 103, 121, 136, 163, 192
HhaI GCGC 6 cut(s) 112, 162, 687, 789, 904, 922
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 3 cut(s) 772, 1228, 1627
Hin6I GCGC 6 cut(s) 110, 160, 685, 787, 902, 920
HinP1I GCGC 6 cut(s) 110, 160, 685, 787, 902, 920
HindIII AAGCTT 4 cut(s) 170, 248, 461, 1487
HpaII CCGG 5 cut(s) 103, 121, 136, 163, 192
HphI GGTGA 4 cut(s) 397, 616, 622, 984
Hpy166II GTNNAC 1 cut(s) 613
Hpy8I GTNNAC 1 cut(s) 613
HpyAV CCTTC 5 cut(s) 58, 199, 260, 550, 1103
HpyCH4V TGCA 9 cut(s) 529, 537, 779, 980, 1169, 1228, 1355, 1550, 1623
HpyF10VI GCNNNNNNNGC 1 cut(s) 1915
HpyF3I CTNAG 7 cut(s) 464, 549, 582, 600, 663, 1506, 1959
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 3 cut(s) 772, 1228, 1627
HspAI GCGC 6 cut(s) 110, 160, 685, 787, 902, 920
KasI GGCGCC 1 cut(s) 159
Kpn2I TCCGGA 1 cut(s) 135
KpnI GGTACC 1 cut(s) 1196
Kzo9I GATC 3 cut(s) 1334, 1564, 1954
LmnI GCTCC 9 cut(s) 117, 130, 138, 138, 214, 436, 502, 1306, 1650
Lsp1109I GCAGC 1 cut(s) 1584
LweI GCATC 4 cut(s) 321, 546, 1342, 1756
MaeI CTAG 7 cut(s) 357, 369, 1364, 1439, 1652, 1664, 1770
MaeIII GTNAC 4 cut(s) 937, 997, 1286, 1637
MalI GATC 3 cut(s) 1336, 1566, 1956
MboI GATC 3 cut(s) 1334, 1564, 1954
MfeI CAATTG 1 cut(s) 1092
MflI RGATCY 1 cut(s) 1334
MhlI GDGCHC 2 cut(s) 135, 1920
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 9 cut(s) 49, 53, 197, 218, 268, 351, 665, 1034, 1972
MmeI TCCRAC 3 cut(s) 192, 933, 1847
Mph1103I ATGCAT 1 cut(s) 1171
MroI TCCGGA 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 1154
MseI TTAA 8 cut(s) 864, 906, 1250, 1277, 1611, 1634, 1715, 1748
MslI CAYNNNNRTG 2 cut(s) 1301, 1372
MspA1I CMGCKG 1 cut(s) 1846
MspI CCGG 5 cut(s) 103, 121, 136, 163, 192
MspR9I CCNGG 7 cut(s) 103, 104, 121, 164, 193, 966, 1122
MunI CAATTG 1 cut(s) 1092
Mva1269I GAATGC 2 cut(s) 1171, 1424
MvaI CCWGG 2 cut(s) 966, 1122
MvnI CGCG 3 cut(s) 110, 144, 518
MwoI GCNNNNNNNGC 1 cut(s) 1915
NarI GGCGCC 1 cut(s) 160
NciI CCSGG 5 cut(s) 103, 104, 121, 164, 193
NdeII GATC 3 cut(s) 1334, 1564, 1954
NlaIII CATG 3 cut(s) 772, 1228, 1627
NlaIV GGNNCC 5 cut(s) 86, 140, 161, 1035, 1194
NmuCI GTSAC 3 cut(s) 937, 997, 1637
NruI TCGCGA 1 cut(s) 518
NsbI TGCGCA 1 cut(s) 921
NsiI ATGCAT 1 cut(s) 1171
NspI RCATGY 2 cut(s) 1228, 1627
OliI CACNNNNGTG 1 cut(s) 1372
PagI TCATGA 1 cut(s) 768
PaqCI CACCTGC 1 cut(s) 1549
PasI CCCWGGG 1 cut(s) 1121
PctI GAATGC 2 cut(s) 1171, 1424
PdmI GAANNNNTTC 1 cut(s) 1154
PfeI GAWTC 4 cut(s) 572, 803, 929, 943
PkrI GCNGC 5 cut(s) 68, 109, 143, 1596, 1599
PleI GAGTC 9 cut(s) 49, 52, 196, 217, 268, 350, 664, 1034, 1971
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 9 cut(s) 49, 52, 196, 217, 268, 350, 664, 1034, 1971
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 964, 1120
PspFI CCCAGC 2 cut(s) 1201, 1895
PspGI CCWGG 2 cut(s) 964, 1120
PspN4I GGNNCC 5 cut(s) 86, 140, 161, 1035, 1194
PspPI GGNCC 2 cut(s) 85, 105
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 1334
PvuII CAGCTG 1 cut(s) 1846
RruI TCGCGA 1 cut(s) 518
RsaI GTAC 3 cut(s) 1194, 1247, 1656
RsaNI GTAC 3 cut(s) 1193, 1246, 1655
RseI CAYNNNNRTG 2 cut(s) 1301, 1372
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 8 cut(s) 864, 906, 1250, 1277, 1611, 1634, 1715, 1748
SatI GCNGC 5 cut(s) 67, 108, 142, 1595, 1598
Sau3AI GATC 3 cut(s) 1334, 1564, 1954
Sau96I GGNCC 2 cut(s) 85, 105
ScaI AGTACT 1 cut(s) 1247
SchI GAGTC 9 cut(s) 49, 53, 197, 218, 268, 351, 665, 1034, 1972
ScrFI CCNGG 7 cut(s) 103, 104, 121, 164, 193, 966, 1122
SduI GDGCHC 2 cut(s) 135, 1920
SfaNI GCATC 4 cut(s) 321, 546, 1342, 1756
SfcI CTRYAG 1 cut(s) 777
SfoI GGCGCC 1 cut(s) 161
SinI GGWCC 1 cut(s) 85
SmaI CCCGGG 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 1301, 1372
SmlI CTYRAG 5 cut(s) 440, 590, 933, 1370, 1601
SmoI CTYRAG 5 cut(s) 440, 590, 933, 1370, 1601
SsiI CCGC 6 cut(s) 67, 108, 142, 1028, 1594, 1678
SspDI GGCGCC 1 cut(s) 159
SspMI CTAG 7 cut(s) 357, 369, 1364, 1439, 1652, 1664, 1770
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 7 cut(s) 101, 102, 119, 162, 191, 964, 1120
StyI CCWWGG 1 cut(s) 1804
TatI WGTACW 1 cut(s) 1245
TauI GCSGC 4 cut(s) 69, 110, 144, 1597
TfiI GAWTC 4 cut(s) 572, 803, 929, 943
Tru1I TTAA 8 cut(s) 864, 906, 1250, 1277, 1611, 1634, 1715, 1748
Tru9I TTAA 8 cut(s) 864, 906, 1250, 1277, 1611, 1634, 1715, 1748
TscAI CASTG 4 cut(s) 641, 1108, 1416, 1860
TseFI GTSAC 3 cut(s) 937, 997, 1637
TseI GCWGC 1 cut(s) 1597
Tsp45I GTSAC 3 cut(s) 937, 997, 1637
TspDTI ATGAA 8 cut(s) 558, 785, 873, 1122, 1147, 1485, 1703, 1746
TspMI CCCGGG 1 cut(s) 102
TspRI CASTG 4 cut(s) 641, 1108, 1416, 1860
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 6 cut(s) 294, 838, 1057, 1138, 1405, 1452
XbaI TCTAGA 1 cut(s) 1663
XceI RCATGY 2 cut(s) 1228, 1627
XmaI CCCGGG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 1154
XspI CTAG 7 cut(s) 357, 369, 1364, 1439, 1652, 1664, 1770
ZrmI AGTACT 1 cut(s) 1247
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.