RLG00000025542

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000126
Physical Location & Seq
Reverse (-)
46564976 .. 46565890
915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025542

Sequence Viewer

Length: 795 bp
ATGGAGGAGGAGGAGGAGATAGCATCGGAGTTGAAGCAGAGAAATTCGGTTAGGGTTTTCAGAATGGAGGAGGAGGAGGAGATAGCATCGGAGTTGAAGCAGCGAAATGTGAGAGAAGCGTGGAAGGAGCTGGACGACCACTTTGACTCGACCCGGAGAAGGCTCCGGACCCGGTTCCAGGAGCTCCAGGCCCGCGAGGAGGAAATCGGAGTCCGTGAGAAGCTGTTGGAGATGAAAGAGCTGAGATTCGAAGCTCAGGCCAAGAGATTGAATGAAGTTGTGAGGCGGGCCGAAGAAGGAAAGAGTCAGTTGGAGTCTCTTAGGGTTTTGATTGAAAAACGTGAAGAAGAGCTTGGTGTTAAAGAAAAGAGGTTTTCAGAGGTTGGGGAATTGGTTAGGGAAAAGGAGAGGGAGTATGATTTGATTCAGAATCGTGTGAAAGAGAGGGGTAAGAGATTGAACAAGTATAATCGTGTGATTGAGTTGAAAAAGGGGCAACTTGGTTCGATTCTGAAATCGATGATGGAATGCCAGAGCAGAATCGATTCGAGGGAAGAGATAATGAGGGAAATGGAGTTGAAAGGGAGGGACTTTTGTTTGCTGAAGAAATCGATGGAGGATTGGTTATGTAAAGTTGAATTGAGAAACAGGGAGCTTGATGGATGGGTTGAGGTTCTTGAGGTAAAGGAGAAGGGTGTTGAGTCGAAAGTTAAGGAACTCCATTTGATCGTTGAGAGGGTCAGTGAATGCCTTGATGAGGTTCAGGTGAAAGAAGAGAGCATTTTGTTTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

265

Amino Acids

31.9

Weight (kDa)

5.53

Isoelectric Point (pI)

66.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 195
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 2 cut(s) 193, 286
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 623
AfiI CCNNNNNNNGG 4 cut(s) 159, 178, 199, 757
AgsI TTSAA 8 cut(s) 34, 97, 271, 335, 460, 487, 580, 638
AjnI CCWGG 2 cut(s) 177, 186
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 7 cut(s) 130, 184, 223, 241, 254, 352, 655
AluI AGCT 7 cut(s) 130, 184, 223, 241, 254, 352, 655
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 321
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 3 cut(s) 189, 258, 288
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 1 cut(s) 544
AspS9I GGNCC 3 cut(s) 168, 190, 288
AsuC2I CCSGG 2 cut(s) 154, 172
AsuHPI GGTGA 1 cut(s) 778
AsuII TTCGAA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 112
BccI CCATC 4 cut(s) 517, 607, 653, 657
BciT130I CCWGG 2 cut(s) 179, 188
BcnI CCSGG 2 cut(s) 154, 172
BcoDI GTCTC 1 cut(s) 321
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 4 cut(s) 154, 172, 179, 188
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 168, 190, 288
BmiI GGNNCC 3 cut(s) 164, 170, 176
BmrFI CCNGG 4 cut(s) 154, 172, 179, 188
BmsI GCATC 2 cut(s) 32, 95
BpmI CTGGAG 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 2 cut(s) 154, 172
Bsa29I ATCGAT 3 cut(s) 518, 543, 611
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 4 cut(s) 398, 428, 608, 638
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 178, 199, 757
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 2 cut(s) 179, 188
BseCI ATCGAT 3 cut(s) 518, 543, 611
BseGI GGATG 1 cut(s) 668
BseLI CCNNNNNNNGG 4 cut(s) 159, 178, 199, 757
BseMII CTCAG 2 cut(s) 233, 269
BseRI GAGGAG 9 cut(s) 20, 23, 26, 29, 83, 86, 89, 92, 212
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 3 cut(s) 191, 260, 290
BshVI ATCGAT 3 cut(s) 518, 543, 611
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 3 cut(s) 154, 166, 172
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 4 cut(s) 159, 178, 199, 757
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 2 cut(s) 533, 752
BsnI GGCC 3 cut(s) 191, 260, 290
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 186
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 1 cut(s) 726
BspACI CCGC 2 cut(s) 193, 286
BspANI GGCC 3 cut(s) 191, 260, 290
BspCNI CTCAG 2 cut(s) 234, 268
BspDI ATCGAT 3 cut(s) 518, 543, 611
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 3 cut(s) 164, 170, 176
BspQI GCTCTTC 1 cut(s) 342
BspT104I TTCGAA 1 cut(s) 249
BssMI GATC 1 cut(s) 726
Bst2UI CCWGG 2 cut(s) 179, 188
Bst6I CTCTTC 3 cut(s) 342, 549, 768
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 193, 288
BstDEI CTNAG 3 cut(s) 242, 255, 320
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 1 cut(s) 668
BstFNI CGCG 1 cut(s) 195
BstKTI GATC 1 cut(s) 729
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 726
BstNI CCWGG 2 cut(s) 179, 188
BstSCI CCNGG 4 cut(s) 152, 170, 177, 186
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 112
Bsu15I ATCGAT 3 cut(s) 518, 543, 611
BsuRI GGCC 3 cut(s) 191, 260, 290
BsuTUI ATCGAT 3 cut(s) 518, 543, 611
BtsCI GGATG 1 cut(s) 668
BtsIMutI CAGTG 1 cut(s) 748
Cac8I GCNNGC 2 cut(s) 193, 288
Cfr13I GGNCC 3 cut(s) 168, 190, 288
ClaI ATCGAT 3 cut(s) 518, 543, 611
DdeI CTNAG 3 cut(s) 242, 255, 320
DpnI GATC 1 cut(s) 728
DpnII GATC 1 cut(s) 726
Eam1104I CTCTTC 3 cut(s) 342, 549, 768
EarI CTCTTC 3 cut(s) 342, 549, 768
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoRII CCWGG 2 cut(s) 177, 186
EcoT38I GRGCYC 1 cut(s) 186
FaiI YATR 3 cut(s) 417, 468, 628
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 602
FauI CCCGC 2 cut(s) 200, 279
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 675
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 3 cut(s) 191, 260, 290
HapII CCGG 3 cut(s) 154, 166, 172
HpaII CCGG 3 cut(s) 154, 166, 172
HphI GGTGA 1 cut(s) 778
Hpy188I TCNGA 7 cut(s) 28, 62, 91, 209, 379, 429, 513
Hpy188III TCNNGA 2 cut(s) 166, 677
HpyAV CCTTC 4 cut(s) 118, 153, 290, 685
HpyCH4IV ACGT 1 cut(s) 340
HpyF3I CTNAG 3 cut(s) 242, 255, 320
HpySE526I ACGT 1 cut(s) 340
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 1 cut(s) 726
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 5 cut(s) 127, 168, 181, 189, 652
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 32, 95
MaeII ACGT 1 cut(s) 340
MalI GATC 1 cut(s) 728
MboI GATC 1 cut(s) 726
MboII GAAGA 6 cut(s) 305, 356, 359, 566, 616, 785
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 43, 389, 638
MlyI GAGTC 5 cut(s) 140, 219, 313, 323, 710
MmeI TCCRAC 2 cut(s) 207, 291
MroI TCCGGA 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 544
MseI TTAA 2 cut(s) 360, 711
MspI CCGG 3 cut(s) 154, 166, 172
MspR9I CCNGG 4 cut(s) 154, 172, 179, 188
Mva1269I GAATGC 2 cut(s) 533, 752
MvaI CCWGG 2 cut(s) 179, 188
MvnI CGCG 1 cut(s) 195
NciI CCSGG 2 cut(s) 154, 172
NdeII GATC 1 cut(s) 726
NlaIV GGNNCC 3 cut(s) 164, 170, 176
NspV TTCGAA 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 2 cut(s) 533, 752
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 6 cut(s) 246, 424, 430, 508, 540, 545
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 5 cut(s) 140, 218, 312, 322, 709
PpsI GAGTC 5 cut(s) 140, 218, 312, 322, 709
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 177, 186
PspGI CCWGG 2 cut(s) 177, 186
PspN4I GGNNCC 3 cut(s) 164, 170, 176
PspPI GGNCC 3 cut(s) 168, 190, 288
SacI GAGCTC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 360, 711
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 726
Sau96I GGNCC 3 cut(s) 168, 190, 288
SchI GAGTC 5 cut(s) 140, 219, 313, 323, 710
ScrFI CCNGG 4 cut(s) 154, 172, 179, 188
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 2 cut(s) 32, 95
SfuI TTCGAA 1 cut(s) 249
SinI GGWCC 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 3 cut(s) 43, 389, 638
SsiI CCGC 2 cut(s) 193, 286
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 4 cut(s) 152, 170, 177, 186
TaiI ACGT 1 cut(s) 343
TaqI TCGA 8 cut(s) 149, 249, 506, 518, 543, 548, 611, 704
TasI AATT 3 cut(s) 43, 389, 638
TfiI GAWTC 6 cut(s) 246, 424, 430, 508, 540, 545
Tru1I TTAA 2 cut(s) 360, 711
Tru9I TTAA 2 cut(s) 360, 711
TscAI CASTG 1 cut(s) 748
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 248, 288
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 748
VpaK11BI GGWCC 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.