Rh3DG050600

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000126
Physical Location & Seq
Forward (+)
3392895 .. 3396233
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG050600.1

Sequence Viewer

Length: 2349 bp
ATGGAAGAGACGATCTCGGATTTGAAAGAATCGGAGGCGGACCAAATTGCTCTGGCCGAAGCATTCGAGAATTTGCGAGCCCGCTGCAAGCAAATTGGGGATCAGTTCATCTCGACCCAGAGCACAATCTCAACCCGGTTTAAGGAGCTCCAGACCCGCGAGGAGGAAATCGGGCGCCGGGAGAAGCTTCTGGAAGAGAAAGAGTCCGGCTTTAAGTCGAAGGAGGAGGAGTTGGATGCAATTGAGGAGGCCATTACAGAGAAGCTACTGGAGTTTGAAGAAGGTAAGACCCAATTGGAAAGACTTAATTTTTCGATTGATGATAAAGAGAGGAGGGTTTTGGAACTTGAGGAATTGATTAGGGTAAAAGAGAGGGAGTGTGATTTGATCGAAAATCGTATCGAAAAGGGTACCAATATGATGATTAGGATTGAGGAGAGTATTAAAGAAATGGATTTGAAGGTGAAAGGTTTTGACTTGCATAAGAAAAAAATGGAGGATTGGAGCAGTAAGCTTGAATTGAAAGAGAAGGAACTAGAGAGGTTGTTTGAGAAGCTTAGATTGAAAGAGGCGTTATTAGAACCAAATGTTGTAGAGCTTCATGTTCTTGCTAACAGCGTCGAAGAGTGCCTCAACGAAGCTCAAAGGAGGGAGAGGGAAGTTGAATCGAAAGAGAGACGAGTTGAATCAAGAGTTAAGGAAGTAGAGTTGGCTGAGATGAGGGTCAATGAGTGTCTCAATGAAGGTCAGAGGAAAGAGAGGGAAGTTGAATTGAAAGAGAGACGAGTTGAATCAAGAGTTAAGGAAGTTGAGTTGGCTGAGATGAGGGTCAAGGAATGCCTCAATGAATCTCACAGGATAGAGAAGGAAGTTGAATCGAAAGTTAAGGAACTTGAGTTGACTGAGATGAGGGTCAAGGAATGCCTCAATGAAGCTCACAGGAAAGAGAAGGAAGTTGAATCGAAAGTTAAGGAACTTGAGTTGACTGAGATGAGGGTCAAGGAACGCCTCAATAAGGTTGAATTGAAAGAAGAGCATTTTTGTTTAATGGAGAAGTTGATAGAAGAAAACAAAAGACGTTTGGATGTACTCATGAAGACTTCAGAAGAGCGGGAAAAACACTTGGATTCACTCCAAAAGTCGGTGGAAGAGCGCGAAAGGAATTTGGATTTGGTATCTGATGAACTTAAAAGGAAAGAGAGGGAATTTCAACAGCGGGCCGAAGCGCTTGAATTGAACTGGGCGCAATTTGATTCGCCAGGGAAGATTCAGCAGTTGGAATATACACCTGGGGTTGACAATGCGGTTGTTTCTTCATCTGTGACCAACAACATTTCTTCCTTTGTCAAAGCGGACGAACCAGAATCTTCACTGTCTAAAAATGCTGCAAGTTTTCTTTCCTCAAATCTTCAGCCAAATGCCACCAGTGATGAAGGATATGTCCCAGGGTTTCTAAATGAGAATTTAAGTGGGAATAATTTCATAGATAATGAATTGGCTGCTTCTCTTCGGTTGTTACAAGACCCAGCTAAACTCGTGTTATATAATATGCAAAAATCCCTTGATCAGTACTTAAGAAATGGATATTTTGAAGAAAGTATAATGTCAGGTAACCTTTCCATATTGAAGGAGCTAATGAGTATTTCACCACATGTTGGACCTCATCTGAAAGTAGATGCAACATATCTAGCAGCCCAGTGGAAAACAAAGATGAGAGGCAATACCGAAAATTCAGTGGAGAGTTTGGCATTCTTGTTGTTTATAACTCTGTATGGATTGGTTTCTATGTTGAATGTAGATGAGATAGTAAAGCTTCTTGGGTTGATTTCTCAGAATAAAAGGGCTCTCGAATTATGTCAGACACATGCTTTTGCAGTTAAGATCGCTGATCTTATTCGCAGTCTTATTGAAAGGAAGCAGCTGCCTGTGGCCGTTAGATGTATTTGCATGCTCAAGTTAACTGACATGCTCCCCCTAGTACCACTCCTAGAAGAGTATGTGCAGGATGCAATGGAAAGTTTCAAAGAAATTTGTGGGTTAAGGATTACTCCTGATGAAAAGATCAAGGTTTTTAAAAAACAAATAGCTGATGCAAGAGCTTTGGTTCAATGCCTCAAAGATTACAACCTTGGATCCGAACACCCGTCCAATGCCATTGAAATACAAATAGTTCAGCTGGAAACACTGGCGGAGAATTGGAGACTTTTGGTGCCGCCTCTTTGTCCCAGTATCATTGATCAACACAAGGATGGAAAAAGAAAGAAGCATAATACTAGCACTTCTGACCCTGAGTTCCAACCACAACAGCAGCGTAAAATAAAGATTGTCTTTCGTGGAATTGGACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

782

Amino Acids

90.84

Weight (kDa)

5.27

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 484 - 729 9e-40 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1763
Acc65I GGTACC 1 cut(s) 410
AccB1I GGYRCC 3 cut(s) 174, 410, 2209
AccB7I CCANNNNNTGG 1 cut(s) 1655
AccBSI CCGCTC 1 cut(s) 1111
AccII CGCG 2 cut(s) 159, 1155
AciI CCGC 9 cut(s) 38, 82, 157, 1111, 1216, 1304, 1352, 2189, 2213
AclWI GGATC 3 cut(s) 108, 2127, 2140
AcoI YGGCCR 2 cut(s) 54, 1929
AcsI RAATTY 6 cut(s) 70, 1162, 1205, 1462, 1729, 2028
AcuI CTGAAG 2 cut(s) 1086, 1394
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 4 cut(s) 412, 1089, 1571, 1980
AfeI AGCGCT 1 cut(s) 1227
AfiI CCNNNNNNNGG 5 cut(s) 142, 163, 1015, 1141, 1655
AflII CTTAAG 1 cut(s) 1573
AflIII ACRYGT 1 cut(s) 1651
AjnI CCWGG 3 cut(s) 1258, 1288, 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 1154, 1186
Alw21I GWGCWC 2 cut(s) 125, 150
Alw26I GTCTC 5 cut(s) 2, 670, 740, 775, 2194
AlwI GGATC 3 cut(s) 108, 2127, 2140
Aor51HI AGCGCT 1 cut(s) 1227
AoxI GGCC 4 cut(s) 54, 249, 1218, 1929
ApeKI GCWGC 7 cut(s) 84, 1385, 1499, 1691, 1918, 1921, 2308
ApoI RAATTY 6 cut(s) 70, 1162, 1205, 1462, 1729, 2028
Asp700I GAANNNNTTC 1 cut(s) 1478
Asp718I GGTACC 1 cut(s) 410
AspLEI GCGC 4 cut(s) 177, 1155, 1228, 1246
AspS9I GGNCC 4 cut(s) 40, 1218, 1658, 2342
AsuC2I CCSGG 2 cut(s) 136, 179
AsuHPI GGTGA 2 cut(s) 475, 1638
AvaII GGWCC 3 cut(s) 40, 1658, 2342
BamHI GGATCC 1 cut(s) 2132
BanI GGYRCC 3 cut(s) 174, 410, 2209
BanII GRGCYC 3 cut(s) 82, 150, 1846
BauI CACGAG 1 cut(s) 1535
BbsI GAAGAC 1 cut(s) 1103
Bbv12I GWGCWC 2 cut(s) 125, 150
BbvI GCAGC 7 cut(s) 71, 1372, 1486, 1703, 1908, 1930, 2320
BccI CCATC 1 cut(s) 2243
BceAI ACGGC 1 cut(s) 1916
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 3 cut(s) 1260, 1290, 1446
BclI TGATCA 2 cut(s) 1564, 2236
BcnI CCSGG 2 cut(s) 136, 179
BcoDI GTCTC 5 cut(s) 2, 670, 740, 775, 2194
BfaI CTAG 6 cut(s) 536, 1688, 1976, 1988, 2274, 2347
BfoI RGCGCY 2 cut(s) 178, 1229
BfrI CTTAAG 1 cut(s) 1573
BisI GCNGC 8 cut(s) 85, 1386, 1500, 1692, 1919, 1922, 2213, 2309
BlsI GCNGC 8 cut(s) 86, 1387, 1501, 1693, 1920, 1923, 2214, 2310
BmcAI AGTACT 1 cut(s) 1571
Bme1390I CCNGG 5 cut(s) 136, 179, 1260, 1290, 1446
Bme18I GGWCC 3 cut(s) 40, 1658, 2342
BmgT120I GGNCC 4 cut(s) 40, 1218, 1658, 2342
BmiI GGNNCC 5 cut(s) 176, 412, 2134, 2211, 2344
BmrFI CCNGG 5 cut(s) 136, 179, 1260, 1290, 1446
BmrI ACTGGG 3 cut(s) 1249, 1690, 2220
BmsI GCATC 4 cut(s) 226, 1666, 1996, 2080
BmuI ACTGGG 3 cut(s) 1249, 1690, 2220
BpiI GAAGAC 1 cut(s) 1103
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 134, 290
BpuEI CTTGAG 4 cut(s) 368, 914, 998, 1937
BpuMI CCSGG 2 cut(s) 136, 179
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 5 cut(s) 1259, 1289, 1444, 1445, 2128
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 163, 1015, 1141, 1655
Bse1I ACTGG 6 cut(s) 273, 1244, 1425, 1696, 2190, 2226
Bse3DI GCAATG 1 cut(s) 2016
BseBI CCWGG 3 cut(s) 1260, 1290, 1446
BseDI CCNNGG 5 cut(s) 1259, 1289, 1444, 1445, 2128
BseGI GGATG 4 cut(s) 241, 1090, 2011, 2254
BseLI CCNNNNNNNGG 5 cut(s) 142, 163, 1015, 1141, 1655
BseMI GCAATG 1 cut(s) 2016
BseMII CTCAG 6 cut(s) 705, 810, 894, 978, 1844, 2280
BseNI ACTGG 6 cut(s) 273, 1244, 1425, 1696, 2190, 2226
BseRI GAGGAG 6 cut(s) 176, 239, 242, 260, 346, 449
BseXI GCAGC 7 cut(s) 71, 1372, 1486, 1703, 1908, 1930, 2320
BseYI CCCAGC 1 cut(s) 1525
BsgI GTGCAG 1 cut(s) 2021
Bsh1236I CGCG 2 cut(s) 159, 1155
BshFI GGCC 4 cut(s) 56, 251, 1220, 1931
BshNI GGYRCC 3 cut(s) 174, 410, 2209
BsiHKAI GWGCWC 2 cut(s) 125, 150
BsiSI CCGG 3 cut(s) 136, 178, 207
BslFI GGGAC 2 cut(s) 1427, 2208
BslI CCNNNNNNNGG 5 cut(s) 142, 163, 1015, 1141, 1655
BsmAI GTCTC 5 cut(s) 2, 670, 740, 775, 2194
BsmBI CGTCTC 3 cut(s) 2, 670, 775
BsmFI GGGAC 2 cut(s) 1427, 2208
BsmI GAATGC 4 cut(s) 62, 842, 926, 1748
BsnI GGCC 4 cut(s) 56, 251, 1220, 1931
Bsp1286I GDGCHC 4 cut(s) 82, 125, 150, 1846
Bsp143I GATC 9 cut(s) 12, 100, 387, 1564, 1881, 1888, 2061, 2132, 2236
BspACI CCGC 9 cut(s) 38, 82, 157, 1111, 1216, 1304, 1352, 2189, 2213
BspANI GGCC 4 cut(s) 56, 251, 1220, 1931
BspCNI CTCAG 6 cut(s) 706, 811, 895, 979, 1843, 2281
BspFNI CGCG 2 cut(s) 159, 1155
BspHI TCATGA 1 cut(s) 1092
BspLI GGNNCC 5 cut(s) 176, 412, 2134, 2211, 2344
BspPI GGATC 3 cut(s) 108, 2127, 2140
BspQI GCTCTTC 3 cut(s) 1026, 1101, 1143
BspT107I GGYRCC 3 cut(s) 174, 410, 2209
BspTI CTTAAG 1 cut(s) 1573
BsrBI CCGCTC 1 cut(s) 1111
BsrDI GCAATG 1 cut(s) 2016
BsrI ACTGG 6 cut(s) 273, 1244, 1425, 1696, 2190, 2226
BssECI CCNNGG 5 cut(s) 1259, 1289, 1444, 1445, 2128
BssMI GATC 9 cut(s) 12, 100, 387, 1564, 1881, 1888, 2061, 2132, 2236
BssNI GRCGYC 1 cut(s) 175
BssSI CACGAG 1 cut(s) 1535
BssT1I CCWWGG 1 cut(s) 2128
Bst2BI CACGAG 1 cut(s) 1535
Bst2UI CCWGG 3 cut(s) 1260, 1290, 1446
Bst4CI ACNGT 1 cut(s) 1374
Bst6I CTCTTC 7 cut(s) 189, 618, 1026, 1101, 1143, 1512, 1986
BstACI GRCGYC 1 cut(s) 175
BstAFI CTTAAG 1 cut(s) 1573
BstC8I GCNNGC 5 cut(s) 78, 82, 89, 1218, 1949
BstDEI CTNAG 7 cut(s) 557, 714, 819, 903, 987, 1830, 2289
BstEII GGTNACC 1 cut(s) 1610
BstENI CCTNNNNNAGG 1 cut(s) 1013
BstF5I GGATG 4 cut(s) 241, 1090, 2011, 2254
BstFNI CGCG 2 cut(s) 159, 1155
BstH2I RGCGCY 2 cut(s) 178, 1229
BstHHI GCGC 4 cut(s) 177, 1155, 1228, 1246
BstKTI GATC 9 cut(s) 15, 103, 390, 1567, 1884, 1891, 2064, 2135, 2239
BstMAI GTCTC 5 cut(s) 2, 670, 740, 775, 2194
BstMBI GATC 9 cut(s) 12, 100, 387, 1564, 1881, 1888, 2061, 2132, 2236
BstNI CCWGG 3 cut(s) 1260, 1290, 1446
BstNSI RCATGY 4 cut(s) 1655, 1868, 1951, 1969
BstPI GGTNACC 1 cut(s) 1610
BstSCI CCNGG 5 cut(s) 134, 177, 1258, 1288, 1444
BstUI CGCG 2 cut(s) 159, 1155
BstV1I GCAGC 7 cut(s) 71, 1372, 1486, 1703, 1908, 1930, 2320
BstV2I GAAGAC 1 cut(s) 1103
BstX2I RGATCY 1 cut(s) 2132
BstYI RGATCY 1 cut(s) 2132
BsuRI GGCC 4 cut(s) 56, 251, 1220, 1931
BtsCI GGATG 4 cut(s) 241, 1090, 2011, 2254
BtsIMutI CAGTG 5 cut(s) 1370, 1432, 1703, 1740, 2183
Cac8I GCNNGC 5 cut(s) 78, 82, 89, 1218, 1949
CciI TCATGA 1 cut(s) 1092
CfoI GCGC 4 cut(s) 177, 1155, 1228, 1246
Cfr13I GGNCC 4 cut(s) 40, 1218, 1658, 2342
CseI GACGC 1 cut(s) 607
Csp6I GTAC 4 cut(s) 411, 1088, 1570, 1979
CviAII CATG 6 cut(s) 602, 1093, 1652, 1865, 1948, 1966
CviQI GTAC 4 cut(s) 411, 1088, 1570, 1979
DdeI CTNAG 7 cut(s) 557, 714, 819, 903, 987, 1830, 2289
DinI GGCGCC 1 cut(s) 176
DpnI GATC 9 cut(s) 14, 102, 389, 1566, 1883, 1890, 2063, 2134, 2238
DpnII GATC 9 cut(s) 12, 100, 387, 1564, 1881, 1888, 2061, 2132, 2236
DraI TTTAAA 1 cut(s) 2074
EaeI YGGCCR 2 cut(s) 54, 1929
Eam1104I CTCTTC 7 cut(s) 189, 618, 1026, 1101, 1143, 1512, 1986
EarI CTCTTC 7 cut(s) 189, 618, 1026, 1101, 1143, 1512, 1986
EciI GGCGGA 2 cut(s) 53, 2204
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 2128
Eco24I GRGCYC 3 cut(s) 82, 150, 1846
Eco47I GGWCC 3 cut(s) 40, 1658, 2342
Eco47III AGCGCT 1 cut(s) 1227
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 1086, 1394
Eco91I GGTNACC 1 cut(s) 1610
EcoICRI GAGCTC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 1013
EcoO65I GGTNACC 1 cut(s) 1610
EcoRII CCWGG 3 cut(s) 1258, 1288, 1444
EcoT14I CCWWGG 1 cut(s) 2128
EcoT38I GRGCYC 3 cut(s) 82, 150, 1846
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 2128
Esp3I CGTCTC 3 cut(s) 2, 670, 775
FaeI CATG 6 cut(s) 605, 1096, 1655, 1868, 1951, 1969
FalI AAGNNNNNCTT 2 cut(s) 2312, 2344
FaqI GGGAC 2 cut(s) 1427, 2208
FatI CATG 6 cut(s) 601, 1092, 1651, 1864, 1947, 1965
FauI CCCGC 4 cut(s) 89, 164, 1104, 1209
FbaI TGATCA 2 cut(s) 1564, 2236
Fnu4HI GCNGC 8 cut(s) 85, 1386, 1500, 1692, 1919, 1922, 2213, 2309
FokI GGATG 4 cut(s) 248, 1097, 2018, 2261
FriOI GRGCYC 3 cut(s) 82, 150, 1846
Fsp4HI GCNGC 8 cut(s) 85, 1386, 1500, 1692, 1919, 1922, 2213, 2309
FspBI CTAG 6 cut(s) 536, 1688, 1976, 1988, 2274, 2347
GlaI GCGC 4 cut(s) 176, 1154, 1227, 1245
GluI GCNGC 8 cut(s) 85, 1386, 1500, 1692, 1919, 1922, 2213, 2309
GsaI CCCAGC 1 cut(s) 1529
GsuI CTGGAG 2 cut(s) 134, 290
HaeII RGCGCY 2 cut(s) 178, 1229
HaeIII GGCC 4 cut(s) 56, 251, 1220, 1931
HapII CCGG 3 cut(s) 136, 178, 207
HgaI GACGC 1 cut(s) 607
HhaI GCGC 4 cut(s) 177, 1155, 1228, 1246
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 6 cut(s) 605, 1096, 1655, 1868, 1951, 1969
Hin6I GCGC 4 cut(s) 175, 1153, 1226, 1244
HinP1I GCGC 4 cut(s) 175, 1153, 1226, 1244
HincII GTYRAC 4 cut(s) 900, 984, 1297, 1959
HindII GTYRAC 4 cut(s) 900, 984, 1297, 1959
HindIII AAGCTT 4 cut(s) 185, 512, 554, 1811
HpaI GTTAAC 1 cut(s) 1959
HpaII CCGG 3 cut(s) 136, 178, 207
HphI GGTGA 2 cut(s) 475, 1638
Hpy166II GTNNAC 4 cut(s) 900, 984, 1297, 1959
Hpy188III TCNNGA 9 cut(s) 67, 112, 151, 191, 690, 795, 1093, 1847, 2051
Hpy8I GTNNAC 4 cut(s) 900, 984, 1297, 1959
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 9 cut(s) 214, 275, 454, 523, 737, 859, 943, 1427, 1621
HpyCH4III ACNGT 1 cut(s) 1374
HpyCH4IV ACGT 1 cut(s) 1078
HpyF3I CTNAG 7 cut(s) 557, 714, 819, 903, 987, 1830, 2289
HpySE526I ACGT 1 cut(s) 1078
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 6 cut(s) 605, 1096, 1655, 1868, 1951, 1969
HspAI GCGC 4 cut(s) 175, 1153, 1226, 1244
KasI GGCGCC 1 cut(s) 174
KpnI GGTACC 1 cut(s) 414
Ksp22I TGATCA 2 cut(s) 1564, 2236
KspAI GTTAAC 1 cut(s) 1959
Kzo9I GATC 9 cut(s) 12, 100, 387, 1564, 1881, 1888, 2061, 2132, 2236
LguI GCTCTTC 3 cut(s) 1026, 1101, 1143
LmnI GCTCC 5 cut(s) 145, 153, 504, 1630, 1974
Lsp1109I GCAGC 7 cut(s) 71, 1372, 1486, 1703, 1908, 1930, 2320
LweI GCATC 4 cut(s) 226, 1666, 1996, 2080
MaeI CTAG 6 cut(s) 536, 1688, 1976, 1988, 2274, 2347
MaeII ACGT 1 cut(s) 1078
MaeIII GTNAC 3 cut(s) 1321, 1515, 1610
MalI GATC 9 cut(s) 14, 102, 389, 1566, 1883, 1890, 2063, 2134, 2238
MbiI CCGCTC 1 cut(s) 1111
MboI GATC 9 cut(s) 12, 100, 387, 1564, 1881, 1888, 2061, 2132, 2236
MfeI CAATTG 2 cut(s) 240, 293
MflI RGATCY 1 cut(s) 2132
MhlI GDGCHC 4 cut(s) 82, 125, 150, 1846
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 4 cut(s) 213, 1257, 1636, 2320
MroXI GAANNNNTTC 1 cut(s) 1478
MslI CAYNNNNRTG 1 cut(s) 2247
MspA1I CMGCKG 4 cut(s) 84, 1216, 1921, 2176
MspCI CTTAAG 1 cut(s) 1573
MspI CCGG 3 cut(s) 136, 178, 207
MspR9I CCNGG 5 cut(s) 136, 179, 1260, 1290, 1446
MunI CAATTG 2 cut(s) 240, 293
Mva1269I GAATGC 4 cut(s) 62, 842, 926, 1748
MvaI CCWGG 3 cut(s) 1260, 1290, 1446
MvnI CGCG 2 cut(s) 159, 1155
NarI GGCGCC 1 cut(s) 175
NciI CCSGG 2 cut(s) 136, 179
NdeII GATC 9 cut(s) 12, 100, 387, 1564, 1881, 1888, 2061, 2132, 2236
NlaIII CATG 6 cut(s) 605, 1096, 1655, 1868, 1951, 1969
NlaIV GGNNCC 5 cut(s) 176, 412, 2134, 2211, 2344
NmuCI GTSAC 1 cut(s) 1321
NspI RCATGY 4 cut(s) 1655, 1868, 1951, 1969
PaeI GCATGC 1 cut(s) 1951
PagI TCATGA 1 cut(s) 1092
PasI CCCWGGG 1 cut(s) 1445
PciI ACATGT 1 cut(s) 1651
PciSI GCTCTTC 3 cut(s) 1026, 1101, 1143
PctI GAATGC 4 cut(s) 62, 842, 926, 1748
PdmI GAANNNNTTC 1 cut(s) 1478
PflMI CCANNNNNTGG 1 cut(s) 1655
PkrI GCNGC 8 cut(s) 86, 1387, 1501, 1693, 1920, 1923, 2214, 2310
PleI GAGTC 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 211
PscI ACATGT 1 cut(s) 1651
PsiI TTATAA 1 cut(s) 1763
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 1258, 1288, 1444
PspEI GGTNACC 1 cut(s) 1610
PspFI CCCAGC 1 cut(s) 1525
PspGI CCWGG 3 cut(s) 1258, 1288, 1444
PspN4I GGNNCC 5 cut(s) 176, 412, 2134, 2211, 2344
PspPI GGNCC 4 cut(s) 40, 1218, 1658, 2342
PsuI RGATCY 1 cut(s) 2132
PvuII CAGCTG 2 cut(s) 1921, 2176
RsaI GTAC 4 cut(s) 412, 1089, 1571, 1980
RsaNI GTAC 4 cut(s) 411, 1088, 1570, 1979
RseI CAYNNNNRTG 1 cut(s) 2247
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 3 cut(s) 1026, 1101, 1143
SatI GCNGC 8 cut(s) 85, 1386, 1500, 1692, 1919, 1922, 2213, 2309
Sau3AI GATC 9 cut(s) 12, 100, 387, 1564, 1881, 1888, 2061, 2132, 2236
Sau96I GGNCC 4 cut(s) 40, 1218, 1658, 2342
ScaI AGTACT 1 cut(s) 1571
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 5 cut(s) 136, 179, 1260, 1290, 1446
SduI GDGCHC 4 cut(s) 82, 125, 150, 1846
SfaNI GCATC 4 cut(s) 226, 1666, 1996, 2080
SfoI GGCGCC 1 cut(s) 176
SinI GGWCC 3 cut(s) 40, 1658, 2342
SmiMI CAYNNNNRTG 1 cut(s) 2247
SmlI CTYRAG 5 cut(s) 347, 893, 977, 1573, 1952
SmoI CTYRAG 5 cut(s) 347, 893, 977, 1573, 1952
SphI GCATGC 1 cut(s) 1951
SsiI CCGC 9 cut(s) 38, 82, 157, 1111, 1216, 1304, 1352, 2189, 2213
SspDI GGCGCC 1 cut(s) 174
SspMI CTAG 6 cut(s) 536, 1688, 1976, 1988, 2274, 2347
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 5 cut(s) 134, 177, 1258, 1288, 1444
StyI CCWWGG 1 cut(s) 2128
TaaI ACNGT 1 cut(s) 1374
TaiI ACGT 1 cut(s) 1081
TatI WGTACW 2 cut(s) 1087, 1569
TauI GCSGC 1 cut(s) 2215
TscAI CASTG 5 cut(s) 1377, 1432, 1703, 1740, 2190
TseFI GTSAC 1 cut(s) 1321
TseI GCWGC 7 cut(s) 84, 1385, 1499, 1691, 1918, 1921, 2308
Tsp45I GTSAC 1 cut(s) 1321
TspRI CASTG 5 cut(s) 1377, 1432, 1703, 1740, 2190
Van91I CCANNNNNTGG 1 cut(s) 1655
Vha464I CTTAAG 1 cut(s) 1573
VpaK11BI GGWCC 3 cut(s) 40, 1658, 2342
XagI CCTNNNNNAGG 1 cut(s) 1013
XapI RAATTY 6 cut(s) 70, 1162, 1205, 1462, 1729, 2028
XceI RCATGY 4 cut(s) 1655, 1868, 1951, 1969
XmnI GAANNNNTTC 1 cut(s) 1478
XspI CTAG 6 cut(s) 536, 1688, 1976, 1988, 2274, 2347
ZrmI AGTACT 1 cut(s) 1571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.