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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2396 |
| AarI | CACCTGC | 1 cut(s) | 1732 |
| Acc36I | ACCTGC | 2 cut(s) | 1732, 2526 |
| Acc65I | GGTACC | 1 cut(s) | 2722 |
| AccB1I | GGYRCC | 3 cut(s) | 1720, 2722, 2803 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 961 |
| AccBSI | CCGCTC | 1 cut(s) | 17 |
| AccI | GTMKAC | 1 cut(s) | 371 |
| AciI | CCGC | 5 cut(s) | 17, 97, 587, 1594, 2341 |
| AclWI | GGATC | 1 cut(s) | 1250 |
| AcsI | RAATTY | 3 cut(s) | 688, 895, 2816 |
| AcuI | CTGAAG | 2 cut(s) | 2247, 2809 |
| AfaI | GTAC | 4 cut(s) | 744, 1050, 2724, 2767 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 45, 877, 961, 1003 |
| AflIII | ACRYGT | 1 cut(s) | 2152 |
| AhlI | ACTAGT | 1 cut(s) | 814 |
| AjnI | CCWGG | 4 cut(s) | 576, 747, 1238, 2794 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1976, 2008 |
| Alw26I | GTCTC | 4 cut(s) | 634, 805, 2349, 2830 |
| AlwI | GGATC | 1 cut(s) | 1250 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1349, 1559, 2021 |
| Ama87I | CYCGRG | 1 cut(s) | 2630 |
| AoxI | GGCC | 3 cut(s) | 36, 786, 1122 |
| ApeKI | GCWGC | 8 cut(s) | 94, 710, 965, 1529, 1682, 1889, 2332, 2600 |
| ApoI | RAATTY | 3 cut(s) | 688, 895, 2816 |
| AseI | ATTAAT | 1 cut(s) | 1494 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2326 |
| Asp718I | GGTACC | 1 cut(s) | 2722 |
| AspS9I | GGNCC | 7 cut(s) | 31, 36, 952, 1757, 1862, 1922, 2159 |
| AsuC2I | CCSGG | 4 cut(s) | 29, 35, 40, 47 |
| AsuHPI | GGTGA | 8 cut(s) | 250, 325, 439, 1476, 1516, 1731, 1896, 1956 |
| AsuII | TTCGAA | 1 cut(s) | 1645 |
| AvaI | CYCGRG | 1 cut(s) | 2630 |
| AvaII | GGWCC | 6 cut(s) | 31, 952, 1757, 1862, 1922, 2159 |
| AxyI | CCTNAGG | 1 cut(s) | 1500 |
| BaeGI | GKGCMC | 1 cut(s) | 1702 |
| BanI | GGYRCC | 3 cut(s) | 1720, 2722, 2803 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2758, 2790 |
| BbsI | GAAGAC | 3 cut(s) | 936, 1643, 2815 |
| BbvCI | CCTCAGC | 2 cut(s) | 1752, 1917 |
| BbvI | GCAGC | 8 cut(s) | 81, 722, 977, 1541, 1669, 1901, 2344, 2587 |
| BccI | CCATC | 6 cut(s) | 115, 223, 1247, 1543, 2419, 2722 |
| BciT130I | CCWGG | 4 cut(s) | 578, 749, 1240, 2796 |
| BclI | TGATCA | 1 cut(s) | 1231 |
| BcnI | CCSGG | 4 cut(s) | 29, 35, 40, 47 |
| BcoDI | GTCTC | 4 cut(s) | 634, 805, 2349, 2830 |
| BcuI | ACTAGT | 1 cut(s) | 814 |
| BfaI | CTAG | 7 cut(s) | 482, 815, 1209, 1776, 1881, 1941, 2769 |
| BfmI | CTRYAG | 1 cut(s) | 1463 |
| BfuAI | ACCTGC | 2 cut(s) | 1732, 2526 |
| BglII | AGATCT | 1 cut(s) | 2438 |
| BlpI | GCTNAGC | 1 cut(s) | 1173 |
| Bme1390I | CCNGG | 8 cut(s) | 29, 35, 40, 47, 578, 749, 1240, 2796 |
| Bme18I | GGWCC | 6 cut(s) | 31, 952, 1757, 1862, 1922, 2159 |
| BmeT110I | CYCGRG | 1 cut(s) | 2630 |
| BmgT120I | GGNCC | 7 cut(s) | 31, 36, 952, 1757, 1862, 1922, 2159 |
| BmrFI | CCNGG | 8 cut(s) | 29, 35, 40, 47, 578, 749, 1240, 2796 |
| BmrI | ACTGGG | 3 cut(s) | 1410, 2191, 2471 |
| BmuI | ACTGGG | 3 cut(s) | 1410, 2191, 2471 |
| BpiI | GAAGAC | 3 cut(s) | 936, 1643, 2815 |
| BpmI | CTGGAG | 3 cut(s) | 33, 2089, 2369 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1752, 1917 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1173 |
| Bpu14I | TTCGAA | 1 cut(s) | 1645 |
| BpuEI | CTTGAG | 4 cut(s) | 242, 566, 818, 2672 |
| BpuMI | CCSGG | 4 cut(s) | 29, 35, 40, 47 |
| Bsa29I | ATCGAT | 2 cut(s) | 353, 626 |
| BsaAI | YACGTR | 1 cut(s) | 2061 |
| BsaI | GGTCTC | 2 cut(s) | 2349, 2830 |
| BsaJI | CCNNGG | 2 cut(s) | 46, 748 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 302, 322, 332, 352, 434, 464, 1780, 1810 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 45, 877, 961, 1003 |
| Bse1I | ACTGG | 6 cut(s) | 507, 789, 1405, 2072, 2197, 2477 |
| Bse21I | CCTNAGG | 1 cut(s) | 1500 |
| Bse3DI | GCAATG | 3 cut(s) | 368, 1377, 1845 |
| BseBI | CCWGG | 4 cut(s) | 578, 749, 1240, 2796 |
| BseCI | ATCGAT | 2 cut(s) | 353, 626 |
| BseDI | CCNNGG | 2 cut(s) | 46, 748 |
| BseGI | GGATG | 6 cut(s) | 586, 658, 1258, 1372, 2192, 2509 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 45, 877, 961, 1003 |
| BseMI | GCAATG | 3 cut(s) | 368, 1377, 1845 |
| BseMII | CTCAG | 7 cut(s) | 753, 1514, 1682, 1743, 1848, 1908, 2608 |
| BseNI | ACTGG | 6 cut(s) | 507, 789, 1405, 2072, 2197, 2477 |
| BseRI | GAGGAG | 6 cut(s) | 299, 323, 404, 458, 731, 1788 |
| BseSI | GKGCMC | 1 cut(s) | 1702 |
| BseXI | GCAGC | 8 cut(s) | 81, 722, 977, 1541, 1669, 1901, 2344, 2587 |
| BshFI | GGCC | 3 cut(s) | 38, 788, 1124 |
| BshNI | GGYRCC | 3 cut(s) | 1720, 2722, 2803 |
| BshVI | ATCGAT | 2 cut(s) | 353, 626 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2630 |
| BsiSI | CCGG | 4 cut(s) | 28, 34, 39, 46 |
| BslFI | GGGAC | 5 cut(s) | 765, 1770, 1875, 1935, 2154 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 45, 877, 961, 1003 |
| BsmAI | GTCTC | 4 cut(s) | 634, 805, 2349, 2830 |
| BsmFI | GGGAC | 5 cut(s) | 765, 1770, 1875, 1935, 2154 |
| BsnI | GGCC | 3 cut(s) | 38, 788, 1124 |
| Bso31I | GGTCTC | 2 cut(s) | 2349, 2830 |
| BsoBI | CYCGRG | 1 cut(s) | 2630 |
| Bsp119I | TTCGAA | 1 cut(s) | 1645 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1702 |
| Bsp143I | GATC | 6 cut(s) | 396, 1012, 1231, 1242, 2438, 2590 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1173 |
| BspACI | CCGC | 5 cut(s) | 17, 97, 587, 1594, 2341 |
| BspANI | GGCC | 3 cut(s) | 38, 788, 1124 |
| BspCNI | CTCAG | 7 cut(s) | 752, 1513, 1681, 1744, 1849, 1909, 2607 |
| BspDI | ATCGAT | 2 cut(s) | 353, 626 |
| BspHI | TCATGA | 1 cut(s) | 1275 |
| BspMI | ACCTGC | 2 cut(s) | 1732, 2526 |
| BspPI | GGATC | 1 cut(s) | 1250 |
| BspQI | GCTCTTC | 2 cut(s) | 774, 2779 |
| BspT104I | TTCGAA | 1 cut(s) | 1645 |
| BspT107I | GGYRCC | 3 cut(s) | 1720, 2722, 2803 |
| BspTNI | GGTCTC | 2 cut(s) | 2349, 2830 |
| BsrBI | CCGCTC | 1 cut(s) | 17 |
| BsrDI | GCAATG | 3 cut(s) | 368, 1377, 1845 |
| BsrI | ACTGG | 6 cut(s) | 507, 789, 1405, 2072, 2197, 2477 |
| BssECI | CCNNGG | 2 cut(s) | 46, 748 |
| BssMI | GATC | 6 cut(s) | 396, 1012, 1231, 1242, 2438, 2590 |
| BssNAI | GTATAC | 1 cut(s) | 372 |
| Bst1107I | GTATAC | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 4 cut(s) | 578, 749, 1240, 2796 |
| Bst4CI | ACNGT | 2 cut(s) | 2145, 2656 |
| Bst6I | CTCTTC | 7 cut(s) | 78, 261, 554, 774, 1842, 2736, 2779 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1559 |
| BstBAI | YACGTR | 1 cut(s) | 2061 |
| BstBI | TTCGAA | 1 cut(s) | 1645 |
| BstC8I | GCNNGC | 5 cut(s) | 63, 146, 786, 1122, 1773 |
| BstDEI | CTNAG | 9 cut(s) | 739, 1173, 1500, 1668, 1752, 1857, 1917, 2318, 2594 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 875 |
| BstF5I | GGATG | 6 cut(s) | 586, 658, 1258, 1372, 2192, 2509 |
| BstKTI | GATC | 6 cut(s) | 399, 1015, 1234, 1245, 2441, 2593 |
| BstMAI | GTCTC | 4 cut(s) | 634, 805, 2349, 2830 |
| BstMBI | GATC | 6 cut(s) | 396, 1012, 1231, 1242, 2438, 2590 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 58, 154, 979, 1205, 1559, 1886, 2338, 2683 |
| BstNI | CCWGG | 4 cut(s) | 578, 749, 1240, 2796 |
| BstNSI | RCATGY | 1 cut(s) | 2156 |
| BstSCI | CCNGG | 8 cut(s) | 27, 33, 38, 45, 576, 747, 1238, 2794 |
| BstSFI | CTRYAG | 1 cut(s) | 1463 |
| BstSLI | GKGCMC | 1 cut(s) | 1702 |
| BstSNI | TACGTA | 1 cut(s) | 2061 |
| BstV1I | GCAGC | 8 cut(s) | 81, 722, 977, 1541, 1669, 1901, 2344, 2587 |
| BstV2I | GAAGAC | 3 cut(s) | 936, 1643, 2815 |
| BstX2I | RGATCY | 1 cut(s) | 2438 |
| BstYI | RGATCY | 1 cut(s) | 2438 |
| BstZ17I | GTATAC | 1 cut(s) | 372 |
| Bsu15I | ATCGAT | 2 cut(s) | 353, 626 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1500 |
| BsuRI | GGCC | 3 cut(s) | 38, 788, 1124 |
| BsuTUI | ATCGAT | 2 cut(s) | 353, 626 |
| BtgZI | GCGATG | 1 cut(s) | 134 |
| BtsCI | GGATG | 6 cut(s) | 586, 658, 1258, 1372, 2192, 2509 |
| BtsI | GCAGTG | 2 cut(s) | 656, 1524 |
| BtsIMutI | CAGTG | 7 cut(s) | 656, 796, 868, 1524, 2204, 2484, 2833 |
| BveI | ACCTGC | 2 cut(s) | 1732, 2526 |
| Cac8I | GCNNGC | 5 cut(s) | 63, 146, 786, 1122, 1773 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1349, 1559, 2021 |
| CciI | TCATGA | 1 cut(s) | 1275 |
| Cfr13I | GGNCC | 7 cut(s) | 31, 36, 952, 1757, 1862, 1922, 2159 |
| ClaI | ATCGAT | 2 cut(s) | 353, 626 |
| Csp6I | GTAC | 4 cut(s) | 743, 1049, 2723, 2766 |
| CviAII | CATG | 5 cut(s) | 1249, 1276, 2153, 2294, 2366 |
| CviQI | GTAC | 4 cut(s) | 743, 1049, 2723, 2766 |
| DdeI | CTNAG | 9 cut(s) | 739, 1173, 1500, 1668, 1752, 1857, 1917, 2318, 2594 |
| DpnI | GATC | 6 cut(s) | 398, 1014, 1233, 1244, 2440, 2592 |
| DpnII | GATC | 6 cut(s) | 396, 1012, 1231, 1242, 2438, 2590 |
| DraI | TTTAAA | 1 cut(s) | 805 |
| Eam1104I | CTCTTC | 7 cut(s) | 78, 261, 554, 774, 1842, 2736, 2779 |
| EarI | CTCTTC | 7 cut(s) | 78, 261, 554, 774, 1842, 2736, 2779 |
| Eco105I | TACGTA | 1 cut(s) | 2061 |
| Eco31I | GGTCTC | 2 cut(s) | 2349, 2830 |
| Eco47I | GGWCC | 6 cut(s) | 31, 952, 1757, 1862, 1922, 2159 |
| Eco57I | CTGAAG | 2 cut(s) | 2247, 2809 |
| Eco81I | CCTNAGG | 1 cut(s) | 1500 |
| Eco88I | CYCGRG | 1 cut(s) | 2630 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 875 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1862 |
| EcoRII | CCWGG | 4 cut(s) | 576, 747, 1238, 2794 |
| EcoT22I | ATGCAT | 2 cut(s) | 1951, 2615 |
| FaeI | CATG | 5 cut(s) | 1252, 1279, 2156, 2297, 2369 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1776, 1808 |
| FaqI | GGGAC | 5 cut(s) | 765, 1770, 1875, 1935, 2154 |
| FatI | CATG | 5 cut(s) | 1248, 1275, 2152, 2293, 2365 |
| FauI | CCCGC | 1 cut(s) | 10 |
| FauNDI | CATATG | 1 cut(s) | 1609 |
| FbaI | TGATCA | 1 cut(s) | 1231 |
| FblI | GTMKAC | 1 cut(s) | 371 |
| FokI | GGATG | 6 cut(s) | 593, 665, 1265, 1379, 2179, 2516 |
| FspBI | CTAG | 7 cut(s) | 482, 815, 1209, 1776, 1881, 1941, 2769 |
| GsuI | CTGGAG | 3 cut(s) | 33, 2089, 2369 |
| HaeIII | GGCC | 3 cut(s) | 38, 788, 1124 |
| HapII | CCGG | 4 cut(s) | 28, 34, 39, 46 |
| Hin1II | CATG | 5 cut(s) | 1252, 1279, 2156, 2297, 2369 |
| HincII | GTYRAC | 1 cut(s) | 2148 |
| HindII | GTYRAC | 1 cut(s) | 2148 |
| HindIII | AAGCTT | 2 cut(s) | 1261, 2402 |
| HpaII | CCGG | 4 cut(s) | 28, 34, 39, 46 |
| HphI | GGTGA | 8 cut(s) | 250, 325, 439, 1476, 1516, 1731, 1896, 1956 |
| Hpy166II | GTNNAC | 3 cut(s) | 372, 866, 2148 |
| Hpy188III | TCNNGA | 5 cut(s) | 1016, 1276, 1941, 2348, 2835 |
| Hpy8I | GTNNAC | 3 cut(s) | 372, 866, 2148 |
| HpyCH4III | ACNGT | 2 cut(s) | 2145, 2656 |
| HpyCH4IV | ACGT | 2 cut(s) | 374, 2060 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 58, 154, 979, 1205, 1559, 1886, 2338, 2683 |
| HpyF3I | CTNAG | 9 cut(s) | 739, 1173, 1500, 1668, 1752, 1857, 1917, 2318, 2594 |
| HpySE526I | ACGT | 2 cut(s) | 374, 2060 |
| Hsp92II | CATG | 5 cut(s) | 1252, 1279, 2156, 2297, 2369 |
| KflI | GGGWCCC | 1 cut(s) | 1862 |
| KpnI | GGTACC | 1 cut(s) | 2726 |
| Ksp22I | TGATCA | 1 cut(s) | 1231 |
| Kzo9I | GATC | 6 cut(s) | 396, 1012, 1231, 1242, 2438, 2590 |
| LguI | GCTCTTC | 2 cut(s) | 774, 2779 |
| LmnI | GCTCC | 6 cut(s) | 14, 478, 718, 1639, 2475, 2710 |
| Lsp1109I | GCAGC | 8 cut(s) | 81, 722, 977, 1541, 1669, 1901, 2344, 2587 |
| MaeI | CTAG | 7 cut(s) | 482, 815, 1209, 1776, 1881, 1941, 2769 |
| MaeII | ACGT | 2 cut(s) | 374, 2060 |
| MaeIII | GTNAC | 7 cut(s) | 1422, 1482, 1555, 1996, 2111, 2538, 2787 |
| MalI | GATC | 6 cut(s) | 398, 1014, 1233, 1244, 2440, 2592 |
| MbiI | CCGCTC | 1 cut(s) | 17 |
| MboI | GATC | 6 cut(s) | 396, 1012, 1231, 1242, 2438, 2590 |
| MflI | RGATCY | 1 cut(s) | 2438 |
| MhlI | GDGCHC | 1 cut(s) | 1702 |
| MlyI | GAGTC | 4 cut(s) | 674, 731, 1430, 2642 |
| MmeI | TCCRAC | 6 cut(s) | 357, 630, 1050, 1066, 2016, 2137 |
| Mph1103I | ATGCAT | 2 cut(s) | 1951, 2615 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2326 |
| MslI | CAYNNNNRTG | 3 cut(s) | 609, 2197, 2298 |
| MspA1I | CMGCKG | 4 cut(s) | 148, 1270, 1325, 1532 |
| MspI | CCGG | 4 cut(s) | 28, 34, 39, 46 |
| MspR9I | CCNGG | 8 cut(s) | 29, 35, 40, 47, 578, 749, 1240, 2796 |
| MvaI | CCWGG | 4 cut(s) | 578, 749, 1240, 2796 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 58, 154, 979, 1205, 1559, 1886, 2338, 2683 |
| NciI | CCSGG | 4 cut(s) | 29, 35, 40, 47 |
| NdeI | CATATG | 1 cut(s) | 1609 |
| NdeII | GATC | 6 cut(s) | 396, 1012, 1231, 1242, 2438, 2590 |
| NlaIII | CATG | 5 cut(s) | 1252, 1279, 2156, 2297, 2369 |
| NmuCI | GTSAC | 4 cut(s) | 1422, 1482, 1996, 2538 |
| NsiI | ATGCAT | 2 cut(s) | 1951, 2615 |
| NspI | RCATGY | 1 cut(s) | 2156 |
| NspV | TTCGAA | 1 cut(s) | 1645 |
| PaeR7I | CTCGAG | 1 cut(s) | 2630 |
| PagI | TCATGA | 1 cut(s) | 1275 |
| PaqCI | CACCTGC | 1 cut(s) | 1732 |
| PciI | ACATGT | 1 cut(s) | 2152 |
| PciSI | GCTCTTC | 2 cut(s) | 774, 2779 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 380 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2326 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 961 |
| PfoI | TCCNGGA | 1 cut(s) | 1238 |
| PleI | GAGTC | 4 cut(s) | 673, 731, 1429, 2641 |
| PpsI | GAGTC | 4 cut(s) | 673, 731, 1429, 2641 |
| Ppu21I | YACGTR | 1 cut(s) | 2061 |
| PpuMI | RGGWCCY | 1 cut(s) | 1862 |
| PscI | ACATGT | 1 cut(s) | 2152 |
| PshBI | ATTAAT | 1 cut(s) | 1494 |
| PsiI | TTATAA | 1 cut(s) | 2396 |
| Psp5II | RGGWCCY | 1 cut(s) | 1862 |
| Psp6I | CCWGG | 4 cut(s) | 576, 747, 1238, 2794 |
| PspGI | CCWGG | 4 cut(s) | 576, 747, 1238, 2794 |
| PspPI | GGNCC | 7 cut(s) | 31, 36, 952, 1757, 1862, 1922, 2159 |
| PspPPI | RGGWCCY | 1 cut(s) | 1862 |
| PspXI | VCTCGAGB | 1 cut(s) | 2630 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1349, 1559, 2021 |
| PsuI | RGATCY | 1 cut(s) | 2438 |
| PvuII | CAGCTG | 4 cut(s) | 148, 1270, 1325, 1532 |
| RsaI | GTAC | 4 cut(s) | 744, 1050, 2724, 2767 |
| RsaNI | GTAC | 4 cut(s) | 743, 1049, 2723, 2766 |
| RseI | CAYNNNNRTG | 3 cut(s) | 609, 2197, 2298 |
| SapI | GCTCTTC | 2 cut(s) | 774, 2779 |
| Sau3AI | GATC | 6 cut(s) | 396, 1012, 1231, 1242, 2438, 2590 |
| Sau96I | GGNCC | 7 cut(s) | 31, 36, 952, 1757, 1862, 1922, 2159 |
| SchI | GAGTC | 4 cut(s) | 674, 731, 1430, 2642 |
| ScrFI | CCNGG | 8 cut(s) | 29, 35, 40, 47, 578, 749, 1240, 2796 |
| SduI | GDGCHC | 1 cut(s) | 1702 |
| SfcI | CTRYAG | 1 cut(s) | 1463 |
| Sfr274I | CTCGAG | 1 cut(s) | 2630 |
| SfuI | TTCGAA | 1 cut(s) | 1645 |
| SinI | GGWCC | 6 cut(s) | 31, 952, 1757, 1862, 1922, 2159 |
| SlaI | CTCGAG | 1 cut(s) | 2630 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 609, 2197, 2298 |
| SmlI | CTYRAG | 5 cut(s) | 221, 545, 797, 2630, 2687 |
| SmoI | CTYRAG | 5 cut(s) | 221, 545, 797, 2630, 2687 |
| SnaBI | TACGTA | 1 cut(s) | 2061 |
| SpeI | ACTAGT | 1 cut(s) | 814 |
| SsiI | CCGC | 5 cut(s) | 17, 97, 587, 1594, 2341 |
| SspI | AATATT | 1 cut(s) | 1811 |
| SspMI | CTAG | 7 cut(s) | 482, 815, 1209, 1776, 1881, 1941, 2769 |
| StyD4I | CCNGG | 8 cut(s) | 27, 33, 38, 45, 576, 747, 1238, 2794 |
| TaaI | ACNGT | 2 cut(s) | 2145, 2656 |
| TaiI | ACGT | 2 cut(s) | 377, 2063 |
| TaqI | TCGA | 8 cut(s) | 57, 353, 626, 1645, 2042, 2616, 2631, 2834 |
| TatI | WGTACW | 1 cut(s) | 2765 |
| TauI | GCSGC | 2 cut(s) | 100, 1597 |
| TscAI | CASTG | 7 cut(s) | 663, 796, 868, 1524, 2204, 2484, 2833 |
| TseFI | GTSAC | 4 cut(s) | 1422, 1482, 1996, 2538 |
| TseI | GCWGC | 8 cut(s) | 94, 710, 965, 1529, 1682, 1889, 2332, 2600 |
| Tsp45I | GTSAC | 4 cut(s) | 1422, 1482, 1996, 2538 |
| TspGWI | ACGGA | 3 cut(s) | 20, 1072, 1377 |
| TspRI | CASTG | 7 cut(s) | 663, 796, 868, 1524, 2204, 2484, 2833 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 961 |
| VpaK11BI | GGWCC | 6 cut(s) | 31, 952, 1757, 1862, 1922, 2159 |
| VspI | ATTAAT | 1 cut(s) | 1494 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 875 |
| XapI | RAATTY | 3 cut(s) | 688, 895, 2816 |
| XbaI | TCTAGA | 1 cut(s) | 1940 |
| XceI | RCATGY | 1 cut(s) | 2156 |
| XhoI | CTCGAG | 1 cut(s) | 2630 |
| XmiI | GTMKAC | 1 cut(s) | 371 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2326 |
| XspI | CTAG | 7 cut(s) | 482, 815, 1209, 1776, 1881, 1941, 2769 |
| Zsp2I | ATGCAT | 2 cut(s) | 1951, 2615 |