Rroxscaffold_6G00430130

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000126
Physical Location & Seq
Forward (+)
50339042 .. 50342131
3090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430130.1

Sequence Viewer

Length: 2109 bp
ATGGAAGAGACGATCTCGGATTTGAAAGAATCGGAGGCGGACCAAATTGCTCTGGCCGAAGCATTCGAGAATTTGCGAGCCCGCTGCAAGCAAATTGGGGACCAGTTCATCTCGACCCGGAGCACAATCTCGACCCGGTTTAAGGAGCTCCAGACCCGCGAGGAGGACATCGGGCGCCGGGAGAAGCTTCTGGAAGAGAAAGAGTCCGGCTTTATGTCGAAGGAGGAGGAGTTGGATGCGATTGAGGAGGCCATTACAGAGAAGCTACTGGAGTTTGAAGAAGGTAAGACCCAATTGGAAAGACTTAATTTTTCGATTGATGATAAAGAGAAGAGGGTTTTGAAACTTGAGGAATTGATTAGGGTAAAAGAGAGGGAGTGTGATTTGATCGAAAATCGTATCGAAAAGGGTACCAATATGATGATTAGGATTGAGGAGAGTATTAAAGAAATGGATTTGAAGGTGAAAGCTTTTGACTTGCATAAGAAAGAAATGGAGGATTGGAGCAGTAAGCTTGAATTGAAAGAGAAGGAACTAGAGGGGTTGTTTGAGAAGCTTAGATTGAAAGAGGCGTTATTAGAACCAAATGTTGTAGAGCTTCATGTTCTTGCTAACAGCGTCGAAGAGTGCCTCAATGAAGCTCAAAGGAGGGAGAGGGAAGTTGAATTGAAAGAGAGACGAGTTGAATCAAGAGTTAAGGAAGTAGAGTTGGCTGAGATGAGGGTCAATGAGTGCCTCAATGAAGCTCAGAGGAAAGAGAGGGAAGTTGAATTGAAAGAGAGACGAGTTGAATCAAGAGTTAAGGAAGTTGAGTTGGCTGAGATGAGGGTCAAGGAATGCCTCAATGAAGCTCACAGGAAAGAGAAGGAAGTTGAATCGAAAGTTAAGGAACTTGAGTTGACTGAGATGAGGGTCAAGGAATGCCTCAATAAGGTTGAATTGAAAGAAGAGCATTTTTGTTTAATGGAGAAGTTGATAGAAGAAAACAAAAGACGTTTGGATGTACTCATGAAGACTTCAGAAGAGCGGGAAAAACACTTGGATTCACTCCAAAAGTCGGTGGAAGAGCGCGAAAGGAATTTGGATTTGGTATCTGATGAACTTAAAAGGAAAGAGAGGGAATTTCAACAGCGGGCCGAAGCACTTGAATTGAACTGGGCGCAATTTAATTCGCCAGGGAAGATTCAGCAGTTGGAATATACACCTGGGGTTGACAATGCAGTTGTTTCTTCATCTGATCTCATTAGACTCTCAGTGGACATATCTTGTGCTACTGCTTATATTCTTCTTGCGATGCCATTTCTGACCAACAACATTTCTTCCCTTGTCAAAGCGGACGAACCAGAATCTTTATTGTCTAAAAATGCAGCAAGTTTTCTTTCCTCAAATCTCCAACCAAATGCCACCAGTGATGAAGGATATGTCCCAGGGTTTCTAAATGAGAATTTAAGTGGGAGTAATTTCATAGATAATGAATTGGCTACTTCTCTTCGGTTGTTACAAGACCCAGCTAAACTTGTGTTATATAATATGCAAAAATCCCTTGATCAGTACTTAAGAAATGGATATTTTGAAGAAAGTATAATGTCAGGTAACCTTTCCATATTGAAGGAGCTAATGAGTATTTCACCACGTATTGGATCTCATCTGAAAGTAGATGCAACATATCTAGCAGCCCAGTGGAAAACAAAGATGAGAAGCAATACCGAAAATTCAGTGGAGAGTTTGGCATTCTTGTTGTTTATAACTCTGTATGGATTGGTTTCTATGTTGAATGTAGATGAGATAGTAAAGCTTCTTGGGTTGATTTCTCAGAATAAAAGAGCTCTAGAATTATGTCAGACACATGCTTTTGCAGTTAAGATTGCTGGAACTTCTCCTATCCAGTTTGATGGACCCTACAATTTTGTTGTACACATAACAGATCTTATTCGCAGTCTTATTGAAAGGAACCAGCTGCCTGTGGCTGTTAGATGTATTTGCATGCTCAAGTTAACTGACGTGGTCCCCCTAGTACCACTCCTAGAAGAGTATGTGCAGGATGCAATGGAAAGTTTCAAAGAAATTTGTGGGTTAAGGATTACTCCTGATGAAAAGGTACCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

702

Amino Acids

81.22

Weight (kDa)

5.01

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 478 - 624 1.3e-19 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1745
Acc65I GGTACC 2 cut(s) 410, 2098
AccB1I GGYRCC 3 cut(s) 174, 410, 2098
AccB7I CCANNNNNTGG 1 cut(s) 1637
AccBSI CCGCTC 1 cut(s) 1027
AccII CGCG 2 cut(s) 159, 1071
AciI CCGC 6 cut(s) 38, 82, 157, 1027, 1132, 1334
AclWI GGATC 1 cut(s) 1648
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 6 cut(s) 70, 1078, 1121, 1444, 1711, 2064
AcuI CTGAAG 1 cut(s) 1002
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 6 cut(s) 412, 1005, 1553, 1914, 2016, 2100
AfiI CCNNNNNNNGG 5 cut(s) 142, 163, 931, 1057, 1637
AflII CTTAAG 1 cut(s) 1555
AjiI CACGTC 1 cut(s) 2002
AjnI CCWGG 3 cut(s) 1174, 1204, 1426
AjuI GAANNNNNNNTTGG 2 cut(s) 1070, 1102
Alw21I GWGCWC 3 cut(s) 125, 150, 1828
Alw26I GTCTC 3 cut(s) 2, 670, 775
AlwI GGATC 1 cut(s) 1648
AoxI GGCC 3 cut(s) 54, 249, 1134
ApeKI GCWGC 4 cut(s) 84, 1367, 1673, 1957
ApoI RAATTY 6 cut(s) 70, 1078, 1121, 1444, 1711, 2064
Asp718I GGTACC 2 cut(s) 410, 2098
AspLEI GCGC 3 cut(s) 177, 1071, 1162
AspS9I GGNCC 5 cut(s) 40, 100, 1134, 1895, 2005
AsuC2I CCSGG 3 cut(s) 118, 136, 179
AsuHPI GGTGA 2 cut(s) 475, 1620
AvaII GGWCC 4 cut(s) 40, 100, 1895, 2005
BanI GGYRCC 3 cut(s) 174, 410, 2098
BanII GRGCYC 3 cut(s) 82, 150, 1828
BbsI GAAGAC 1 cut(s) 1019
Bbv12I GWGCWC 3 cut(s) 125, 150, 1828
BbvI GCAGC 4 cut(s) 71, 1379, 1685, 1944
BccI CCATC 1 cut(s) 1886
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 3 cut(s) 1176, 1206, 1428
BclI TGATCA 1 cut(s) 1546
BcnI CCSGG 3 cut(s) 118, 136, 179
BcoDI GTCTC 3 cut(s) 2, 670, 775
BfaI CTAG 5 cut(s) 536, 1670, 1829, 2012, 2024
BfoI RGCGCY 1 cut(s) 178
BfrI CTTAAG 1 cut(s) 1555
BglII AGATCT 1 cut(s) 1924
BisI GCNGC 4 cut(s) 85, 1368, 1674, 1958
BlsI GCNGC 4 cut(s) 86, 1369, 1675, 1959
BmcAI AGTACT 1 cut(s) 1553
Bme1390I CCNGG 6 cut(s) 118, 136, 179, 1176, 1206, 1428
Bme18I GGWCC 4 cut(s) 40, 100, 1895, 2005
BmgBI CACGTC 1 cut(s) 2002
BmgT120I GGNCC 5 cut(s) 40, 100, 1134, 1895, 2005
BmiI GGNNCC 7 cut(s) 101, 176, 412, 1897, 1952, 2007, 2100
BmrFI CCNGG 6 cut(s) 118, 136, 179, 1176, 1206, 1428
BmrI ACTGGG 2 cut(s) 1165, 1672
BmsI GCATC 4 cut(s) 226, 1284, 1648, 2032
BmuI ACTGGG 2 cut(s) 1165, 1672
BpiI GAAGAC 1 cut(s) 1019
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 134, 290
BpuEI CTTGAG 3 cut(s) 368, 914, 1973
BpuMI CCSGG 3 cut(s) 118, 136, 179
BsaAI YACGTR 1 cut(s) 1634
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 4 cut(s) 1175, 1205, 1426, 1427
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 163, 931, 1057, 1637
Bse1I ACTGG 6 cut(s) 103, 273, 1160, 1407, 1678, 1885
Bse3DI GCAATG 1 cut(s) 2052
BseBI CCWGG 3 cut(s) 1176, 1206, 1428
BseDI CCNNGG 4 cut(s) 1175, 1205, 1426, 1427
BseGI GGATG 3 cut(s) 241, 1006, 2047
BseLI CCNNNNNNNGG 5 cut(s) 142, 163, 931, 1057, 1637
BseMI GCAATG 1 cut(s) 2052
BseMII CTCAG 6 cut(s) 705, 761, 810, 894, 1266, 1826
BseNI ACTGG 6 cut(s) 103, 273, 1160, 1407, 1678, 1885
BseRI GAGGAG 5 cut(s) 176, 239, 242, 260, 449
BseXI GCAGC 4 cut(s) 71, 1379, 1685, 1944
BseYI CCCAGC 1 cut(s) 1507
BsgI GTGCAG 1 cut(s) 2057
Bsh1236I CGCG 2 cut(s) 159, 1071
BshFI GGCC 3 cut(s) 56, 251, 1136
BshNI GGYRCC 3 cut(s) 174, 410, 2098
BsiHKAI GWGCWC 3 cut(s) 125, 150, 1828
BsiSI CCGG 4 cut(s) 118, 136, 178, 207
BslFI GGGAC 3 cut(s) 113, 1409, 1991
BslI CCNNNNNNNGG 5 cut(s) 142, 163, 931, 1057, 1637
BsmAI GTCTC 3 cut(s) 2, 670, 775
BsmBI CGTCTC 3 cut(s) 2, 670, 775
BsmFI GGGAC 3 cut(s) 113, 1409, 1991
BsmI GAATGC 4 cut(s) 62, 842, 926, 1730
BsnI GGCC 3 cut(s) 56, 251, 1136
Bsp1286I GDGCHC 4 cut(s) 82, 125, 150, 1828
Bsp1407I TGTACA 1 cut(s) 1912
Bsp143I GATC 6 cut(s) 12, 387, 1237, 1546, 1640, 1924
BspACI CCGC 6 cut(s) 38, 82, 157, 1027, 1132, 1334
BspANI GGCC 3 cut(s) 56, 251, 1136
BspCNI CTCAG 6 cut(s) 706, 760, 811, 895, 1265, 1825
BspFNI CGCG 2 cut(s) 159, 1071
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 7 cut(s) 101, 176, 412, 1897, 1952, 2007, 2100
BspPI GGATC 1 cut(s) 1648
BspQI GCTCTTC 3 cut(s) 942, 1017, 1059
BspT107I GGYRCC 3 cut(s) 174, 410, 2098
BspTI CTTAAG 1 cut(s) 1555
BsrBI CCGCTC 1 cut(s) 1027
BsrDI GCAATG 1 cut(s) 2052
BsrGI TGTACA 1 cut(s) 1912
BsrI ACTGG 6 cut(s) 103, 273, 1160, 1407, 1678, 1885
BssECI CCNNGG 4 cut(s) 1175, 1205, 1426, 1427
BssMI GATC 6 cut(s) 12, 387, 1237, 1546, 1640, 1924
BssNI GRCGYC 1 cut(s) 175
Bst2UI CCWGG 3 cut(s) 1176, 1206, 1428
Bst6I CTCTTC 8 cut(s) 189, 326, 618, 942, 1017, 1059, 1494, 2022
BstACI GRCGYC 1 cut(s) 175
BstAFI CTTAAG 1 cut(s) 1555
BstAUI TGTACA 1 cut(s) 1912
BstBAI YACGTR 1 cut(s) 1634
BstC8I GCNNGC 5 cut(s) 78, 82, 89, 1134, 1985
BstDEI CTNAG 7 cut(s) 557, 714, 747, 819, 903, 1252, 1812
BstEII GGTNACC 1 cut(s) 1592
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 3 cut(s) 241, 1006, 2047
BstFNI CGCG 2 cut(s) 159, 1071
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 3 cut(s) 177, 1071, 1162
BstKTI GATC 6 cut(s) 15, 390, 1240, 1549, 1643, 1927
BstMAI GTCTC 3 cut(s) 2, 670, 775
BstMBI GATC 6 cut(s) 12, 387, 1237, 1546, 1640, 1924
BstNI CCWGG 3 cut(s) 1176, 1206, 1428
BstNSI RCATGY 2 cut(s) 1850, 1987
BstPI GGTNACC 1 cut(s) 1592
BstSCI CCNGG 6 cut(s) 116, 134, 177, 1174, 1204, 1426
BstUI CGCG 2 cut(s) 159, 1071
BstV1I GCAGC 4 cut(s) 71, 1379, 1685, 1944
BstV2I GAAGAC 1 cut(s) 1019
BstX2I RGATCY 2 cut(s) 1640, 1924
BstXI CCANNNNNNTGG 1 cut(s) 1892
BstYI RGATCY 2 cut(s) 1640, 1924
BsuRI GGCC 3 cut(s) 56, 251, 1136
BtgZI GCGATG 1 cut(s) 1307
BtrI CACGTC 1 cut(s) 2002
BtsCI GGATG 3 cut(s) 241, 1006, 2047
BtsIMutI CAGTG 4 cut(s) 1260, 1414, 1685, 1722
Cac8I GCNNGC 5 cut(s) 78, 82, 89, 1134, 1985
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 3 cut(s) 177, 1071, 1162
Cfr13I GGNCC 5 cut(s) 40, 100, 1134, 1895, 2005
CseI GACGC 1 cut(s) 607
Csp6I GTAC 6 cut(s) 411, 1004, 1552, 1913, 2015, 2099
CviAII CATG 4 cut(s) 602, 1009, 1847, 1984
CviQI GTAC 6 cut(s) 411, 1004, 1552, 1913, 2015, 2099
DdeI CTNAG 7 cut(s) 557, 714, 747, 819, 903, 1252, 1812
DinI GGCGCC 1 cut(s) 176
DpnI GATC 6 cut(s) 14, 389, 1239, 1548, 1642, 1926
DpnII GATC 6 cut(s) 12, 387, 1237, 1546, 1640, 1924
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 8 cut(s) 189, 326, 618, 942, 1017, 1059, 1494, 2022
EarI CTCTTC 8 cut(s) 189, 326, 618, 942, 1017, 1059, 1494, 2022
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 2 cut(s) 148, 1826
Eco24I GRGCYC 3 cut(s) 82, 150, 1828
Eco47I GGWCC 4 cut(s) 40, 100, 1895, 2005
Eco53kI GAGCTC 2 cut(s) 148, 1826
Eco57I CTGAAG 1 cut(s) 1002
Eco91I GGTNACC 1 cut(s) 1592
EcoICRI GAGCTC 2 cut(s) 148, 1826
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoO65I GGTNACC 1 cut(s) 1592
EcoRII CCWGG 3 cut(s) 1174, 1204, 1426
EcoT38I GRGCYC 3 cut(s) 82, 150, 1828
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
Esp3I CGTCTC 3 cut(s) 2, 670, 775
FaeI CATG 4 cut(s) 605, 1012, 1850, 1987
FaqI GGGAC 3 cut(s) 113, 1409, 1991
FatI CATG 4 cut(s) 601, 1008, 1846, 1983
FauI CCCGC 4 cut(s) 89, 164, 1020, 1125
FbaI TGATCA 1 cut(s) 1546
Fnu4HI GCNGC 4 cut(s) 85, 1368, 1674, 1958
FokI GGATG 3 cut(s) 248, 1013, 2054
FriOI GRGCYC 3 cut(s) 82, 150, 1828
Fsp4HI GCNGC 4 cut(s) 85, 1368, 1674, 1958
FspBI CTAG 5 cut(s) 536, 1670, 1829, 2012, 2024
GlaI GCGC 3 cut(s) 176, 1070, 1161
GluI GCNGC 4 cut(s) 85, 1368, 1674, 1958
GsaI CCCAGC 1 cut(s) 1511
GsuI CTGGAG 2 cut(s) 134, 290
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 3 cut(s) 56, 251, 1136
HapII CCGG 4 cut(s) 118, 136, 178, 207
HgaI GACGC 1 cut(s) 607
HhaI GCGC 3 cut(s) 177, 1071, 1162
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 4 cut(s) 605, 1012, 1850, 1987
Hin6I GCGC 3 cut(s) 175, 1069, 1160
HinP1I GCGC 3 cut(s) 175, 1069, 1160
HincII GTYRAC 3 cut(s) 900, 1213, 1995
HindII GTYRAC 3 cut(s) 900, 1213, 1995
HindIII AAGCTT 5 cut(s) 185, 468, 512, 554, 1793
HinfI GANTC 9 cut(s) 29, 203, 686, 791, 875, 1043, 1183, 1248, 1346
HpaI GTTAAC 1 cut(s) 1995
HpaII CCGG 4 cut(s) 118, 136, 178, 207
HphI GGTGA 2 cut(s) 475, 1620
Hpy166II GTNNAC 5 cut(s) 900, 1213, 1258, 1915, 1995
Hpy8I GTNNAC 5 cut(s) 900, 1213, 1258, 1915, 1995
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 7 cut(s) 214, 275, 454, 523, 859, 1409, 1603
HpyCH4IV ACGT 3 cut(s) 994, 1633, 2001
HpyF3I CTNAG 7 cut(s) 557, 714, 747, 819, 903, 1252, 1812
HpySE526I ACGT 3 cut(s) 994, 1633, 2001
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 4 cut(s) 605, 1012, 1850, 1987
HspAI GCGC 3 cut(s) 175, 1069, 1160
KasI GGCGCC 1 cut(s) 174
KpnI GGTACC 2 cut(s) 414, 2102
Ksp22I TGATCA 1 cut(s) 1546
KspAI GTTAAC 1 cut(s) 1995
Kzo9I GATC 6 cut(s) 12, 387, 1237, 1546, 1640, 1924
LguI GCTCTTC 3 cut(s) 942, 1017, 1059
LmnI GCTCC 5 cut(s) 120, 145, 153, 504, 1612
Lsp1109I GCAGC 4 cut(s) 71, 1379, 1685, 1944
LweI GCATC 4 cut(s) 226, 1284, 1648, 2032
MaeI CTAG 5 cut(s) 536, 1670, 1829, 2012, 2024
MaeII ACGT 3 cut(s) 994, 1633, 2001
MaeIII GTNAC 2 cut(s) 1497, 1592
MalI GATC 6 cut(s) 14, 389, 1239, 1548, 1642, 1926
MbiI CCGCTC 1 cut(s) 1027
MboI GATC 6 cut(s) 12, 387, 1237, 1546, 1640, 1924
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 2 cut(s) 1640, 1924
MhlI GDGCHC 4 cut(s) 82, 125, 150, 1828
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 2 cut(s) 212, 1242
MmeI TCCRAC 3 cut(s) 213, 1173, 1417
MspA1I CMGCKG 3 cut(s) 84, 1132, 1957
MspCI CTTAAG 1 cut(s) 1555
MspI CCGG 4 cut(s) 118, 136, 178, 207
MspR9I CCNGG 6 cut(s) 118, 136, 179, 1176, 1206, 1428
MunI CAATTG 1 cut(s) 293
Mva1269I GAATGC 4 cut(s) 62, 842, 926, 1730
MvaI CCWGG 3 cut(s) 1176, 1206, 1428
MvnI CGCG 2 cut(s) 159, 1071
NarI GGCGCC 1 cut(s) 175
NciI CCSGG 3 cut(s) 118, 136, 179
NdeII GATC 6 cut(s) 12, 387, 1237, 1546, 1640, 1924
NlaIII CATG 4 cut(s) 605, 1012, 1850, 1987
NlaIV GGNNCC 7 cut(s) 101, 176, 412, 1897, 1952, 2007, 2100
NspI RCATGY 2 cut(s) 1850, 1987
PaeI GCATGC 1 cut(s) 1987
PagI TCATGA 1 cut(s) 1008
PasI CCCWGGG 1 cut(s) 1427
PciSI GCTCTTC 3 cut(s) 942, 1017, 1059
PctI GAATGC 4 cut(s) 62, 842, 926, 1730
PfeI GAWTC 7 cut(s) 29, 686, 791, 875, 1043, 1183, 1346
PflFI GACNNNGTC 1 cut(s) 2003
PflMI CCANNNNNTGG 1 cut(s) 1637
PkrI GCNGC 4 cut(s) 86, 1369, 1675, 1959
PleI GAGTC 2 cut(s) 211, 1242
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 2 cut(s) 211, 1242
Ppu21I YACGTR 1 cut(s) 1634
PsiI TTATAA 1 cut(s) 1745
Psp124BI GAGCTC 2 cut(s) 150, 1828
Psp6I CCWGG 3 cut(s) 1174, 1204, 1426
PspEI GGTNACC 1 cut(s) 1592
PspFI CCCAGC 1 cut(s) 1507
PspGI CCWGG 3 cut(s) 1174, 1204, 1426
PspN4I GGNNCC 7 cut(s) 101, 176, 412, 1897, 1952, 2007, 2100
PspPI GGNCC 5 cut(s) 40, 100, 1134, 1895, 2005
PsuI RGATCY 2 cut(s) 1640, 1924
PsyI GACNNNGTC 1 cut(s) 2003
PvuII CAGCTG 1 cut(s) 1957
RsaI GTAC 6 cut(s) 412, 1005, 1553, 1914, 2016, 2100
RsaNI GTAC 6 cut(s) 411, 1004, 1552, 1913, 2015, 2099
SacI GAGCTC 2 cut(s) 150, 1828
SapI GCTCTTC 3 cut(s) 942, 1017, 1059
SatI GCNGC 4 cut(s) 85, 1368, 1674, 1958
Sau3AI GATC 6 cut(s) 12, 387, 1237, 1546, 1640, 1924
Sau96I GGNCC 5 cut(s) 40, 100, 1134, 1895, 2005
ScaI AGTACT 1 cut(s) 1553
SchI GAGTC 2 cut(s) 212, 1242
ScrFI CCNGG 6 cut(s) 118, 136, 179, 1176, 1206, 1428
SduI GDGCHC 4 cut(s) 82, 125, 150, 1828
SfaNI GCATC 4 cut(s) 226, 1284, 1648, 2032
SfoI GGCGCC 1 cut(s) 176
SinI GGWCC 4 cut(s) 40, 100, 1895, 2005
SmlI CTYRAG 4 cut(s) 347, 893, 1555, 1988
SmoI CTYRAG 4 cut(s) 347, 893, 1555, 1988
SphI GCATGC 1 cut(s) 1987
SsiI CCGC 6 cut(s) 38, 82, 157, 1027, 1132, 1334
SspDI GGCGCC 1 cut(s) 174
SspMI CTAG 5 cut(s) 536, 1670, 1829, 2012, 2024
SstI GAGCTC 2 cut(s) 150, 1828
StyD4I CCNGG 6 cut(s) 116, 134, 177, 1174, 1204, 1426
TaiI ACGT 3 cut(s) 997, 1636, 2004
TaqI TCGA 9 cut(s) 66, 113, 131, 218, 314, 390, 402, 621, 878
TatI WGTACW 3 cut(s) 1003, 1551, 1912
TfiI GAWTC 7 cut(s) 29, 686, 791, 875, 1043, 1183, 1346
TscAI CASTG 4 cut(s) 1260, 1414, 1685, 1722
TseI GCWGC 4 cut(s) 84, 1367, 1673, 1957
TspRI CASTG 4 cut(s) 1260, 1414, 1685, 1722
Tth111I GACNNNGTC 1 cut(s) 2003
Van91I CCANNNNNTGG 1 cut(s) 1637
Vha464I CTTAAG 1 cut(s) 1555
VpaK11BI GGWCC 4 cut(s) 40, 100, 1895, 2005
XagI CCTNNNNNAGG 1 cut(s) 929
XapI RAATTY 6 cut(s) 70, 1078, 1121, 1444, 1711, 2064
XbaI TCTAGA 1 cut(s) 1828
XceI RCATGY 2 cut(s) 1850, 1987
XspI CTAG 5 cut(s) 536, 1670, 1829, 2012, 2024
ZrmI AGTACT 1 cut(s) 1553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.