Rh4CG179700

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000126
Physical Location & Seq
Reverse (-)
39075206 .. 39078798
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG179700.1

Sequence Viewer

Length: 2010 bp
ATGATGGCGTCGGAGTTGAGACAATTGGAGGAGCAGAGGTTGCAAGAGCAACAAGAAACGTCGTCGACCCTGCTTCGGTTGATTAAACGCATGAAGAACATGGAGGAGAAGTTTCGGTCGACCCGAAATTCTGCCCAGGTCCGATGTCAAGAGTTGGAGGATCGGGAGAGGCGAATCGGAGATGAGACGAGCAAACTGGACGTGTTGAAGGCTGAGACGGAGAACAAAGCTGTGGAGCTTCGAAGCCTTGAGAAGCTGATCCAGGAGAGACAAGAAGAAGCTGTAAAAGGTGAGAGTCACTTAGACTCGCTCAAGTTGTTAATCCAAGAACATGAAGAAGAACTGGAGTTTAAAGGGAAGCGGTTCTCAGATCTTGAGAGAATGATTGGTGTGAAGGAGGGAGAGTGTAAGTCGGTTCAGAAGAGAATGAAGGAGAGCTTGGAGAAACTGAATAGGGTTGAGAAGGAAATAGAAGAGAAGATTCAATTGAAACAAAAGTTAAGTAGGGCAATGGAGGTGAAAGGGAAGGTGTTTTGTTTGCATAAGACATCAATGAAGGAGTGGTCGAGAAAGCTTGAAGTAAAAGGGAGGGAACTTGAAGAATTGTCTGAGAAGATTGAGTTGAAAGAAAAACAATTTGAACCGAAAGTGGAGGAGATTCGTTTGATTGAAAAAAGGGTAAATGAATGCCTGAATGAGATTGAATTGAAAGAAAGGCATCTTCAGTCACTCGAAAAATCAATTCAAGAGCGTGAAAATTCGTTAAAAGAACGCGAAAAGCACTTAGATTCAATCTCTCATGGACTTGAAATGAGAGAGAAGGAACTTGATCTAAAGGCCAAAGAACTTGAACCGAAGCAATATGAACCGGCACCAGCAAGTACTGTCATTTCTTCCCTTATCGAAGTTGGGGAACCAGAATCTTTACTAGCCAAAAAAGTAGCAGTTTCATCTTCTTCAAATCCTCAATTAAGTGATTCCTTAAAGGCAAGGAATTTGCATGGACAAGTGACTGGGAATGATTTGCTTGAGAACCAATTTTTTGATAATCTGCAAAGTTCATTAGACCCTGCAAAACTTGTGTTGGATTGGATGCAAACTTATCTCTCACAATATTGGACAAAAGGTGATGTTGGTTTTGAAGTAACTTCCATCAAAACCTACATTTCCCTATTAGAGCAGCTACTGAGACTCTCACCACATGCCGGAGCTCAGGTAAAAAGGGATGCAATGAAGTTGGCAGTCCAATGGAAAGCAAATATGAGAGCTGATACAGAGAATTCCTTGGAAATTTTGGGATTTTTGCACTTCCTAGCTACATTTGGGTTGCTTTATACTCTAAATGTAGATGAAATTGTAAAGCTTCTTGGGATGATTTCTCAGCATAAAGAGGCTCTAGAATTATGTCAGACACTTGATTTTGCAGAAGAAATCCCTGAGTTTATCGGGACTCTTGTTGAAAGGAAGCAGCTGATGGAAGCCGTTGGACTGATTTGTACCTTCAATTTAAGTGACAAGTTTCCTCCCGGACCACTCCTAAAAGAATACATGGAGGAACAAATAAAGTGTTGCAGAAATGCTTACAAGAGAACCAAGTTACATAACGAAAAGGTTAGGATTGTGGACGACCAGATAACTAGTCTAAGAGCTGCGATTAACATGATCAAAAACCATAATCTGGAGTCGACGGAGTGTGCATCAACAATCATTGAAATTCAAATAACTCGACTGCAGCAAGTAAAGGAGAACTGGAGACTTCAGGTGGCGAATTTGGCAACTGTGCCAAAAAGAGGAACCAAACGTAGTAGCAGCACTCTTCCTACTGCGTTTGAACCCCGACAGCAGCCCAATAAAGTTCATCGGAAAGCTGTAGCGGTTCCTCGGCCTTCTGCATTGCAAATTTACACCCCGATCTCTCCGCAGTCAGATCTTTCATCTGTGCTGTCACATACGGGGCAGTCTGGTGCCGCTCAGAACACTGGTATACACTACCCTCACTCTGGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

669

Amino Acids

76.94

Weight (kDa)

6.65

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 324 - 583 7.6e-50 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 871, 1964
AccB7I CCANNNNNTGG 1 cut(s) 1678
AccBSI CCGCTC 1 cut(s) 1970
AccI GTMKAC 4 cut(s) 65, 119, 1685, 1984
AccII CGCG 1 cut(s) 774
AciI CCGC 4 cut(s) 361, 1874, 1919, 1968
AclWI GGATC 2 cut(s) 168, 253
AcsI RAATTY 8 cut(s) 127, 757, 994, 1279, 1290, 1713, 1768, 1899
AcuI CTGAAG 2 cut(s) 707, 1742
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 3 cut(s) 883, 1498, 2005
AfiI CCNNNNNNNGG 5 cut(s) 75, 1205, 1678, 1790, 2000
AflIII ACRYGT 1 cut(s) 201
AhlI ACTAGT 1 cut(s) 1637
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 135, 261
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
Alw21I GWGCWC 1 cut(s) 1213
Alw26I GTCTC 6 cut(s) 13, 179, 209, 262, 1183, 1747
AlwI GGATC 2 cut(s) 168, 253
AlwNI CAGNNNCTG 1 cut(s) 1186
AoxI GGCC 2 cut(s) 837, 1883
ApeKI GCWGC 6 cut(s) 1180, 1468, 1649, 1732, 1809, 1843
ApoI RAATTY 8 cut(s) 127, 757, 994, 1279, 1290, 1713, 1768, 1899
Asp700I GAANNNNTTC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 139, 1529
AsuC2I CCSGG 1 cut(s) 1527
AsuHPI GGTGA 4 cut(s) 302, 529, 1139, 1188
AsuII TTCGAA 1 cut(s) 241
AvaII GGWCC 2 cut(s) 139, 1529
BanI GGYRCC 2 cut(s) 871, 1964
BanII GRGCYC 1 cut(s) 1213
Bbv12I GWGCWC 1 cut(s) 1213
BbvI GCAGC 6 cut(s) 1192, 1480, 1636, 1744, 1821, 1855
BccI CCATC 2 cut(s) 1160, 1468
BceAI ACGGC 1 cut(s) 1466
BciT130I CCWGG 2 cut(s) 137, 263
BclI TGATCA 1 cut(s) 1662
BcnI CCSGG 1 cut(s) 1527
BcoDI GTCTC 6 cut(s) 13, 179, 209, 262, 1183, 1747
BcuI ACTAGT 1 cut(s) 1637
BfaI CTAG 4 cut(s) 929, 1313, 1397, 1638
BfmI CTRYAG 2 cut(s) 1730, 1869
BglII AGATCT 2 cut(s) 370, 1927
BisI GCNGC 7 cut(s) 1181, 1469, 1650, 1733, 1810, 1844, 1968
BlsI GCNGC 7 cut(s) 1182, 1470, 1651, 1734, 1811, 1845, 1969
BmcAI AGTACT 1 cut(s) 883
Bme1390I CCNGG 3 cut(s) 137, 263, 1527
Bme18I GGWCC 2 cut(s) 139, 1529
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 139, 1529
BmiI GGNNCC 5 cut(s) 873, 915, 1795, 1878, 1966
BmrFI CCNGG 3 cut(s) 137, 263, 1527
BmrI ACTGGG 1 cut(s) 1023
BmsI GCATC 4 cut(s) 727, 1083, 1216, 1706
BmuI ACTGGG 1 cut(s) 1023
BpmI CTGGAG 3 cut(s) 365, 1700, 1771
Bpu10I CCTNAGC 1 cut(s) 1212
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 4 cut(s) 269, 296, 395, 1049
BpuMI CCSGG 1 cut(s) 1527
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 135, 1284, 1880
BsaXI ACNNNNNCTCC 8 cut(s) 23, 53, 95, 125, 389, 419, 1200, 1230
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 1205, 1678, 1790, 2000
Bse118I RCCGGY 1 cut(s) 868
Bse1I ACTGG 5 cut(s) 201, 348, 1018, 1754, 1984
Bse3DI GCAATG 3 cut(s) 516, 1236, 1892
BseBI CCWGG 2 cut(s) 137, 263
BseDI CCNNGG 3 cut(s) 135, 1284, 1880
BseGI GGATG 3 cut(s) 1098, 1231, 1377
BseLI CCNNNNNNNGG 5 cut(s) 75, 1205, 1678, 1790, 2000
BseMI GCAATG 3 cut(s) 516, 1236, 1892
BseMII CTCAG 8 cut(s) 204, 381, 600, 1178, 1226, 1394, 1428, 1985
BseNI ACTGG 5 cut(s) 201, 348, 1018, 1754, 1984
BseRI GAGGAG 3 cut(s) 44, 119, 668
BseXI GCAGC 6 cut(s) 1192, 1480, 1636, 1744, 1821, 1855
Bsh1236I CGCG 1 cut(s) 774
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 839, 1885
BshNI GGYRCC 2 cut(s) 871, 1964
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 1213
BsiSI CCGG 3 cut(s) 869, 1206, 1527
BslFI GGGAC 1 cut(s) 1462
BslI CCNNNNNNNGG 5 cut(s) 75, 1205, 1678, 1790, 2000
BsmAI GTCTC 6 cut(s) 13, 179, 209, 262, 1183, 1747
BsmBI CGTCTC 2 cut(s) 179, 209
BsmFI GGGAC 1 cut(s) 1462
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 2 cut(s) 839, 1885
Bsp119I TTCGAA 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 1213
Bsp143I GATC 7 cut(s) 160, 258, 370, 829, 1662, 1911, 1927
BspACI CCGC 4 cut(s) 361, 1874, 1919, 1968
BspANI GGCC 2 cut(s) 839, 1885
BspCNI CTCAG 8 cut(s) 205, 380, 601, 1179, 1225, 1393, 1429, 1984
BspFNI CGCG 1 cut(s) 774
BspLI GGNNCC 5 cut(s) 873, 915, 1795, 1878, 1966
BspMAI CTGCAG 1 cut(s) 1734
BspPI GGATC 2 cut(s) 168, 253
BspT104I TTCGAA 1 cut(s) 241
BspT107I GGYRCC 2 cut(s) 871, 1964
BsrBI CCGCTC 1 cut(s) 1970
BsrDI GCAATG 3 cut(s) 516, 1236, 1892
BsrFI RCCGGY 1 cut(s) 868
BsrI ACTGG 5 cut(s) 201, 348, 1018, 1754, 1984
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 3 cut(s) 135, 1284, 1880
BssMI GATC 7 cut(s) 160, 258, 370, 829, 1662, 1911, 1927
BssNAI GTATAC 1 cut(s) 1985
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 1284
Bst1107I GTATAC 1 cut(s) 1985
Bst2UI CCWGG 2 cut(s) 137, 263
Bst4CI ACNGT 2 cut(s) 886, 1780
Bst6I CTCTTC 3 cut(s) 416, 468, 1821
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 40
BstBI TTCGAA 1 cut(s) 241
BstF5I GGATG 3 cut(s) 1098, 1231, 1377
BstFNI CGCG 1 cut(s) 774
BstKTI GATC 7 cut(s) 163, 261, 373, 832, 1665, 1914, 1930
BstMAI GTCTC 6 cut(s) 13, 179, 209, 262, 1183, 1747
BstMBI GATC 7 cut(s) 160, 258, 370, 829, 1662, 1911, 1927
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 40, 1772
BstNI CCWGG 2 cut(s) 137, 263
BstNSI RCATGY 1 cut(s) 1205
BstSCI CCNGG 3 cut(s) 135, 261, 1525
BstSFI CTRYAG 2 cut(s) 1730, 1869
BstUI CGCG 1 cut(s) 774
BstV1I GCAGC 6 cut(s) 1192, 1480, 1636, 1744, 1821, 1855
BstX2I RGATCY 2 cut(s) 370, 1927
BstYI RGATCY 2 cut(s) 370, 1927
BstZ17I GTATAC 1 cut(s) 1985
BsuRI GGCC 2 cut(s) 839, 1885
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 3 cut(s) 1098, 1231, 1377
BtsIMutI CAGTG 1 cut(s) 1977
CaiI CAGNNNCTG 1 cut(s) 1186
Cfr10I RCCGGY 1 cut(s) 868
Cfr13I GGNCC 2 cut(s) 139, 1529
Csp6I GTAC 3 cut(s) 882, 1497, 2004
CviAII CATG 8 cut(s) 91, 100, 332, 800, 1001, 1202, 1549, 1660
CviQI GTAC 3 cut(s) 882, 1497, 2004
DpnI GATC 7 cut(s) 162, 260, 372, 831, 1664, 1913, 1929
DpnII GATC 7 cut(s) 160, 258, 370, 829, 1662, 1911, 1927
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 3 cut(s) 416, 468, 1821
EarI CTCTTC 3 cut(s) 416, 468, 1821
Ecl136II GAGCTC 1 cut(s) 1211
Eco130I CCWWGG 1 cut(s) 1284
Eco24I GRGCYC 1 cut(s) 1213
Eco47I GGWCC 2 cut(s) 139, 1529
Eco53kI GAGCTC 1 cut(s) 1211
Eco57I CTGAAG 2 cut(s) 707, 1742
EcoICRI GAGCTC 1 cut(s) 1211
EcoRI GAATTC 1 cut(s) 1279
EcoRII CCWGG 2 cut(s) 135, 261
EcoT14I CCWWGG 1 cut(s) 1284
EcoT38I GRGCYC 1 cut(s) 1213
ErhI CCWWGG 1 cut(s) 1284
Esp3I CGTCTC 2 cut(s) 179, 209
FaeI CATG 8 cut(s) 94, 103, 335, 803, 1004, 1205, 1552, 1663
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 1 cut(s) 1462
FatI CATG 8 cut(s) 90, 99, 331, 799, 1000, 1201, 1548, 1659
FbaI TGATCA 1 cut(s) 1662
FblI GTMKAC 4 cut(s) 65, 119, 1685, 1984
Fnu4HI GCNGC 7 cut(s) 1181, 1469, 1650, 1733, 1810, 1844, 1968
FokI GGATG 3 cut(s) 1105, 1238, 1384
FriOI GRGCYC 1 cut(s) 1213
Fsp4HI GCNGC 7 cut(s) 1181, 1469, 1650, 1733, 1810, 1844, 1968
FspBI CTAG 4 cut(s) 929, 1313, 1397, 1638
GluI GCNGC 7 cut(s) 1181, 1469, 1650, 1733, 1810, 1844, 1968
GsuI CTGGAG 3 cut(s) 365, 1700, 1771
HaeIII GGCC 2 cut(s) 839, 1885
HapII CCGG 3 cut(s) 869, 1206, 1527
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 8 cut(s) 94, 103, 335, 803, 1004, 1205, 1552, 1663
HincII GTYRAC 3 cut(s) 66, 120, 1686
HindII GTYRAC 3 cut(s) 66, 120, 1686
HindIII AAGCTT 2 cut(s) 572, 1361
HpaII CCGG 3 cut(s) 869, 1206, 1527
HphI GGTGA 4 cut(s) 302, 529, 1139, 1188
Hpy166II GTNNAC 5 cut(s) 66, 120, 1624, 1686, 1985
Hpy188III TCNNGA 8 cut(s) 149, 164, 374, 567, 746, 1397, 1447, 1679
Hpy8I GTNNAC 5 cut(s) 66, 120, 1624, 1686, 1985
Hpy99I CGWCG 4 cut(s) 13, 64, 67, 1690
HpyAV CCTTC 9 cut(s) 202, 388, 424, 457, 520, 550, 814, 1510, 1896
HpyCH4III ACNGT 2 cut(s) 886, 1780
HpyCH4IV ACGT 3 cut(s) 59, 201, 1801
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 1772
HpySE526I ACGT 3 cut(s) 59, 201, 1801
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 8 cut(s) 94, 103, 335, 803, 1004, 1205, 1552, 1663
Ksp22I TGATCA 1 cut(s) 1662
Kzo9I GATC 7 cut(s) 160, 258, 370, 829, 1662, 1911, 1927
LmnI GCTCC 3 cut(s) 31, 235, 1208
Lsp1109I GCAGC 6 cut(s) 1192, 1480, 1636, 1744, 1821, 1855
LweI GCATC 4 cut(s) 727, 1083, 1216, 1706
MaeI CTAG 4 cut(s) 929, 1313, 1397, 1638
MaeII ACGT 3 cut(s) 59, 201, 1801
MaeIII GTNAC 7 cut(s) 296, 726, 1009, 1144, 1511, 1596, 1944
MalI GATC 7 cut(s) 162, 260, 372, 831, 1664, 1913, 1929
MbiI CCGCTC 1 cut(s) 1970
MboI GATC 7 cut(s) 160, 258, 370, 829, 1662, 1911, 1927
MfeI CAATTG 2 cut(s) 23, 485
MflI RGATCY 2 cut(s) 370, 1927
MhlI GDGCHC 1 cut(s) 1213
MlyI GAGTC 5 cut(s) 299, 304, 1185, 1444, 1691
MmeI TCCRAC 3 cut(s) 135, 1065, 1465
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 9 cut(s) 84, 320, 351, 500, 764, 971, 983, 1508, 1656
MspA1I CMGCKG 1 cut(s) 1471
MspI CCGG 3 cut(s) 869, 1206, 1527
MspR9I CCNGG 3 cut(s) 137, 263, 1527
MunI CAATTG 2 cut(s) 23, 485
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 2 cut(s) 137, 263
MvnI CGCG 1 cut(s) 774
MwoI GCNNNNNNNGC 2 cut(s) 40, 1772
NciI CCSGG 1 cut(s) 1527
NdeII GATC 7 cut(s) 160, 258, 370, 829, 1662, 1911, 1927
NlaIII CATG 8 cut(s) 94, 103, 335, 803, 1004, 1205, 1552, 1663
NlaIV GGNNCC 5 cut(s) 873, 915, 1795, 1878, 1966
NmeAIII GCCGAG 1 cut(s) 1861
NmuCI GTSAC 5 cut(s) 296, 726, 1009, 1511, 1944
NspI RCATGY 1 cut(s) 1205
NspV TTCGAA 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 121, 169
PctI GAATGC 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 6 cut(s) 174, 481, 658, 788, 920, 977
PflMI CCANNNNNTGG 1 cut(s) 1678
PfoI TCCNGGA 2 cut(s) 261, 1525
PkrI GCNGC 7 cut(s) 1182, 1470, 1651, 1734, 1811, 1845, 1969
PleI GAGTC 5 cut(s) 299, 303, 1185, 1444, 1690
PpsI GAGTC 5 cut(s) 299, 303, 1185, 1444, 1690
Psp124BI GAGCTC 1 cut(s) 1213
Psp6I CCWGG 2 cut(s) 135, 261
PspGI CCWGG 2 cut(s) 135, 261
PspN4I GGNNCC 5 cut(s) 873, 915, 1795, 1878, 1966
PspPI GGNCC 2 cut(s) 139, 1529
PstI CTGCAG 1 cut(s) 1734
PstNI CAGNNNCTG 1 cut(s) 1186
PsuI RGATCY 2 cut(s) 370, 1927
PvuII CAGCTG 1 cut(s) 1471
RsaI GTAC 3 cut(s) 883, 1498, 2005
RsaNI GTAC 3 cut(s) 882, 1497, 2004
SacI GAGCTC 1 cut(s) 1213
SalI GTCGAC 3 cut(s) 64, 118, 1684
SaqAI TTAA 9 cut(s) 84, 320, 351, 500, 764, 971, 983, 1508, 1656
SatI GCNGC 7 cut(s) 1181, 1469, 1650, 1733, 1810, 1844, 1968
Sau3AI GATC 7 cut(s) 160, 258, 370, 829, 1662, 1911, 1927
Sau96I GGNCC 2 cut(s) 139, 1529
ScaI AGTACT 1 cut(s) 883
SchI GAGTC 5 cut(s) 299, 304, 1185, 1444, 1691
ScrFI CCNGG 3 cut(s) 137, 263, 1527
SduI GDGCHC 1 cut(s) 1213
SfaNI GCATC 4 cut(s) 727, 1083, 1216, 1706
SfcI CTRYAG 2 cut(s) 1730, 1869
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 2 cut(s) 139, 1529
SmlI CTYRAG 4 cut(s) 248, 311, 374, 1028
SmoI CTYRAG 4 cut(s) 248, 311, 374, 1028
SpeI ACTAGT 1 cut(s) 1637
SsiI CCGC 4 cut(s) 361, 1874, 1919, 1968
SspI AATATT 1 cut(s) 1115
SspMI CTAG 4 cut(s) 929, 1313, 1397, 1638
SstI GAGCTC 1 cut(s) 1213
StyD4I CCNGG 3 cut(s) 135, 261, 1525
StyI CCWWGG 1 cut(s) 1284
TaaI ACNGT 2 cut(s) 886, 1780
TaiI ACGT 3 cut(s) 62, 204, 1804
TaqI TCGA 8 cut(s) 65, 119, 241, 566, 732, 903, 1685, 1726
TaqII GACCGA 1 cut(s) 105
TatI WGTACW 1 cut(s) 881
TauI GCSGC 1 cut(s) 1970
TfiI GAWTC 6 cut(s) 174, 481, 658, 788, 920, 977
Tru1I TTAA 9 cut(s) 84, 320, 351, 500, 764, 971, 983, 1508, 1656
Tru9I TTAA 9 cut(s) 84, 320, 351, 500, 764, 971, 983, 1508, 1656
TscAI CASTG 1 cut(s) 1984
TseFI GTSAC 5 cut(s) 296, 726, 1009, 1511, 1944
TseI GCWGC 6 cut(s) 1180, 1468, 1649, 1732, 1809, 1843
Tsp45I GTSAC 5 cut(s) 296, 726, 1009, 1511, 1944
TspGWI ACGGA 2 cut(s) 233, 1703
TspRI CASTG 1 cut(s) 1984
Van91I CCANNNNNTGG 1 cut(s) 1678
VpaK11BI GGWCC 2 cut(s) 139, 1529
XapI RAATTY 8 cut(s) 127, 757, 994, 1279, 1290, 1713, 1768, 1899
XbaI TCTAGA 1 cut(s) 1396
XceI RCATGY 1 cut(s) 1205
XmiI GTMKAC 4 cut(s) 65, 119, 1685, 1984
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 4 cut(s) 929, 1313, 1397, 1638
ZrmI AGTACT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.