Rroxscaffold_6G00430140

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000126
Physical Location & Seq
Forward (+)
50343501 .. 50350644
7144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430140.1

Sequence Viewer

Length: 1929 bp
ATGGAGGAGGTAGCCTTGGATTTGGAGGAATGGGAGTTGAAGCAGAGAAATCTCGAAAAGGCCTTTGAGAATTGTCATTCCCGCTGTAAGAAGGTTGAAGAGCACTTCAACTCAACCCGGAGTTCTTTCCAGACTCAATTCCGAGAGCTCAAGACCAGGGAGGAGGAAATCGGGCTCCGAGAGAAGCAGTTGGAAGAGAAAGAGTCCTATTTTGAGTCCGTGAGGGAATCTAAGGAGGAGGAGTTAGATGCAATTGAGGAGGTGATTATAGAGAAGCAAATACAAGTTGAACAAGTTAAGACTGAGTTGGAGTGTGTTAGTTTATTGGTTAAAGAAAAGAGCCAGAAGCTTGATAGTCAAGAGAAGCGGTTTTTGGAAGTTGAGAAGTTGGTTAGAGAAAATGAGAGGGAGTGTGATTTGATCCAAAACCGTATTGAAGAGGGGACAATGAATTTGAGGAGGATTGAGAAAGTTATTGGGGAAATGGATGTGAAAGTGAAAAGTTTTAGATTGCTTGAGAAATCCATGGAGGATTGGTGCCATAAGCTTGACTTGAAAAAGAAGGACCTTGAAGGATTCTCTGAGAACCTTGCATTGAAAAAAGAGTTATTGAATCAAACTATTCGAGAACTTCATTTTATTGCTAACAGGGTCAAATACTGCCTCACTGAAGTTCAAAGGAAAGAGAGGGAACTTGAATTGAAAGAGACACAAGCTGAATCAAAAGTTGAGGAGCTTAAGTTGACAGACACGAGGGTCAACGAACGCCTCAATGAGGTTGAATTGAAAGAAAAACATTTTTATTTGCTGGAGAAGTCAGTACAAGAAGAGAAACAACATTTGGTGGTGCTCCTAAAAAATGCCGAAGAGCGTGAAAAGCATTTGGATTCACTCCAAAAGTTGGTGGAAGAGGGCAAAAAGGACCTGGATTCACTATCACATGAACTTGAGAGGGAAGTGAGGGAACTTGATCAACAGGTCAAAGAACTTGAATTGAAGCAGGCACAGTTTGATTTTCTATTGAACACGGAGCAATCAGAACATGTTCCTGGGGCTACCAACGAGGCTATTCCTTCATCTAGTAACAATGTGACAAACTTCATTCCTTCCCTTGCCAATATGGAGGAACCAGAATCTTCACTAGCTAGAAATGCAGAAACTTTTCTTTCTTCCAATCTTCAACCACATGCCACCAGCGAGGAAAGGAATGTGCCAGGGTTTCTAGAGGATAATAAGAGTGGGAATGATTCCACACAGAATGAATTGGCTGCTTCTCTTCTGTTGGTACCAGACCCAGCTAAACTAGTGTTGAATAACATGCAAAACTCTCTTGCTAGATACTTGAGAAATGGAGATTTTGAAGAAAGTATCATGTCGAGTAACATTTTCATACTGAAGGAGCTAATGATTGTTTCGCCACTTGTTGGATCTCATCTGAGAGCAGATTTGACAACTTTAGCAGCGCAGTGGAAAGAGAAGATGAGAGGCAATACTGTAAATTTTGGTGACCACTATAAGTTTGTATTATACTTGGCAGATTTCATTCTGATTTTGATACAAAAGAAGCATATAATTGAGGCCGTCAGATTTATTTGCACCTTCAAGTTAATTGATAAGCTACCGCCAATACCACTCTTGAAAGAATATGTGGAGGATGCAAAGAAGTGTTTTGAAGTACTTTGCAGGATAAGGATTGCTCTTGATGAAAAGGTTAAGGCTGTAGACAACCTAATAGGTTATCTAAGAGCTGTGCACCAATGCATCAAAGATAATAATCTCGAGTCCGAATTTCCATCTACAGACATTGAAATGCAATTAGTTCGACTGGAAAAACTGAAGGAGAATTGGAGAATTTTGGCGCCATCTGTTGGTTTTAATGATAAGCAAAAAGTGCAGAGAAAAAGGAAAGAACCTGATAACAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

642

Amino Acids

75.16

Weight (kDa)

5.3

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 407 - 497 1e-06 Frigida-like protein
Frigida PF07899 511 - 615 7e-21 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 755
Acc65I GGTACC 1 cut(s) 1285
AccB1I GGYRCC 3 cut(s) 537, 1285, 1858
AccB7I CCANNNNNTGG 3 cut(s) 901, 1424, 1868
AccI GTMKAC 1 cut(s) 1722
AciI CCGC 3 cut(s) 82, 367, 1622
AclWI GGATC 2 cut(s) 415, 1435
AcsI RAATTY 4 cut(s) 451, 1498, 1787, 1851
AcuI CTGAAG 3 cut(s) 690, 1415, 1856
AcyI GRCGYC 1 cut(s) 1859
AfaI GTAC 3 cut(s) 822, 1287, 1677
AfiI CCNNNNNNNGG 4 cut(s) 775, 901, 1424, 1868
AflII CTTAAG 1 cut(s) 737
AflIII ACRYGT 1 cut(s) 1042
AhlI ACTAGT 1 cut(s) 1303
AjnI CCWGG 4 cut(s) 155, 924, 1048, 1213
AjuI GAANNNNNNNTTGG 4 cut(s) 356, 388, 824, 856
Alw21I GWGCWC 4 cut(s) 105, 150, 852, 1755
Alw26I GTCTC 1 cut(s) 701
Alw44I GTGCAC 1 cut(s) 1751
AlwI GGATC 2 cut(s) 415, 1435
Ama87I CYCGRG 1 cut(s) 1778
AoxI GGCC 2 cut(s) 60, 1578
ApaLI GTGCAC 1 cut(s) 1751
ApeKI GCWGC 2 cut(s) 1268, 1460
ApoI RAATTY 4 cut(s) 451, 1498, 1787, 1851
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
Asp700I GAANNNNTTC 2 cut(s) 1044, 1161
Asp718I GGTACC 1 cut(s) 1285
AspLEI GCGC 2 cut(s) 1465, 1861
AspS9I GGNCC 2 cut(s) 565, 922
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 274, 1517
AvaI CYCGRG 1 cut(s) 1778
AvaII GGWCC 2 cut(s) 565, 922
BaeGI GKGCMC 1 cut(s) 1755
BanI GGYRCC 3 cut(s) 537, 1285, 1858
BanII GRGCYC 2 cut(s) 150, 177
BauI CACGAG 1 cut(s) 751
Bbv12I GWGCWC 4 cut(s) 105, 150, 852, 1755
BbvI GCAGC 2 cut(s) 1255, 1472
BccI CCATC 2 cut(s) 1801, 1870
BceAI ACGGC 1 cut(s) 1565
BcgI CGANNNNNNTGC 2 cut(s) 1802, 1836
BciT130I CCWGG 4 cut(s) 157, 926, 1050, 1215
BclI TGATCA 1 cut(s) 970
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 701
BcuI ACTAGT 1 cut(s) 1303
BfaI CTAG 6 cut(s) 1080, 1142, 1146, 1223, 1304, 1335
BfmI CTRYAG 2 cut(s) 1719, 1797
BfoI RGCGCY 1 cut(s) 1862
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 2 cut(s) 1269, 1461
BlsI GCNGC 2 cut(s) 1270, 1462
BmcAI AGTACT 1 cut(s) 1677
Bme1390I CCNGG 5 cut(s) 118, 157, 926, 1050, 1215
Bme18I GGWCC 2 cut(s) 565, 922
BmeT110I CYCGRG 1 cut(s) 1778
BmgT120I GGNCC 2 cut(s) 565, 922
BmiI GGNNCC 5 cut(s) 176, 539, 1128, 1287, 1860
BmrFI CCNGG 5 cut(s) 118, 157, 926, 1050, 1215
BmsI GCATC 3 cut(s) 238, 1645, 1770
BpmI CTGGAG 1 cut(s) 830
BpuEI CTTGAG 4 cut(s) 134, 536, 968, 1363
BpuMI CCSGG 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 1773
BsaHI GRCGYC 1 cut(s) 1859
BsaJI CCNNGG 5 cut(s) 15, 156, 525, 1049, 1214
BsaXI ACNNNNNCTCC 6 cut(s) 227, 257, 521, 551, 725, 755
Bsc4I CCNNNNNNNGG 4 cut(s) 775, 901, 1424, 1868
Bse1I ACTGG 1 cut(s) 1830
Bse8I GATNNNNATC 1 cut(s) 1773
BseBI CCWGG 4 cut(s) 157, 926, 1050, 1215
BseDI CCNNGG 5 cut(s) 15, 156, 525, 1049, 1214
BseGI GGATG 2 cut(s) 493, 1660
BseJI GATNNNNATC 1 cut(s) 1773
BseLI CCNNNNNNNGG 4 cut(s) 775, 901, 1424, 1868
BseMII CTCAG 3 cut(s) 294, 573, 1427
BseNI ACTGG 1 cut(s) 1830
BseRI GAGGAG 7 cut(s) 20, 176, 251, 254, 272, 472, 746
BseSI GKGCMC 1 cut(s) 1755
BseXI GCAGC 2 cut(s) 1255, 1472
BseYI CCCAGC 1 cut(s) 1294
BsgI GTGCAG 1 cut(s) 1913
BshFI GGCC 2 cut(s) 62, 1580
BshNI GGYRCC 3 cut(s) 537, 1285, 1858
BsiHKAI GWGCWC 4 cut(s) 105, 150, 852, 1755
BsiHKCI CYCGRG 1 cut(s) 1778
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 4 cut(s) 775, 901, 1424, 1868
BsmAI GTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 2 cut(s) 62, 1580
BsoBI CYCGRG 1 cut(s) 1778
Bsp1286I GDGCHC 5 cut(s) 105, 150, 177, 852, 1755
Bsp143I GATC 3 cut(s) 420, 970, 1427
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 3 cut(s) 82, 367, 1622
BspANI GGCC 2 cut(s) 62, 1580
BspCNI CTCAG 3 cut(s) 295, 574, 1428
BspLI GGNNCC 5 cut(s) 176, 539, 1128, 1287, 1860
BspPI GGATC 2 cut(s) 415, 1435
BspQI GCTCTTC 2 cut(s) 93, 861
BspT107I GGYRCC 3 cut(s) 537, 1285, 1858
BspTI CTTAAG 1 cut(s) 737
BsrI ACTGG 1 cut(s) 1830
BssECI CCNNGG 5 cut(s) 15, 156, 525, 1049, 1214
BssMI GATC 3 cut(s) 420, 970, 1427
BssNI GRCGYC 1 cut(s) 1859
BssSI CACGAG 1 cut(s) 751
BssT1I CCWWGG 2 cut(s) 15, 525
Bst2BI CACGAG 1 cut(s) 751
Bst2UI CCWGG 4 cut(s) 157, 926, 1050, 1215
Bst4CI ACNGT 3 cut(s) 431, 1008, 1495
Bst6I CTCTTC 7 cut(s) 93, 189, 432, 822, 861, 903, 1281
BstACI GRCGYC 1 cut(s) 1859
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 1891
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 5 cut(s) 231, 303, 582, 1436, 1742
BstDSI CCRYGG 1 cut(s) 525
BstEII GGTNACC 1 cut(s) 1505
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 2 cut(s) 493, 1660
BstH2I RGCGCY 1 cut(s) 1862
BstHHI GCGC 2 cut(s) 1465, 1861
BstKTI GATC 3 cut(s) 423, 973, 1430
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 3 cut(s) 420, 970, 1427
BstMWI GCNNNNNNNGC 3 cut(s) 877, 1151, 1891
BstNI CCWGG 4 cut(s) 157, 926, 1050, 1215
BstNSI RCATGY 3 cut(s) 1046, 1190, 1321
BstPI GGTNACC 1 cut(s) 1505
BstSCI CCNGG 5 cut(s) 116, 155, 924, 1048, 1213
BstSFI CTRYAG 2 cut(s) 1719, 1797
BstSLI GKGCMC 1 cut(s) 1755
BstV1I GCAGC 2 cut(s) 1255, 1472
BstX2I RGATCY 1 cut(s) 1427
BstYI RGATCY 1 cut(s) 1427
BsuRI GGCC 2 cut(s) 62, 1580
BtgI CCRYGG 1 cut(s) 525
BtsCI GGATG 2 cut(s) 493, 1660
BtsI GCAGTG 1 cut(s) 1472
BtsIMutI CAGTG 2 cut(s) 666, 1472
Cac8I GCNNGC 1 cut(s) 1002
CfoI GCGC 2 cut(s) 1465, 1861
Cfr13I GGNCC 2 cut(s) 565, 922
Csp6I GTAC 3 cut(s) 821, 1286, 1676
CviAII CATG 6 cut(s) 526, 941, 1043, 1187, 1318, 1372
CviQI GTAC 3 cut(s) 821, 1286, 1676
DdeI CTNAG 5 cut(s) 231, 303, 582, 1436, 1742
DinI GGCGCC 1 cut(s) 1860
DpnI GATC 3 cut(s) 422, 972, 1429
DpnII GATC 3 cut(s) 420, 970, 1427
DrdI GACNNNNNNGTC 1 cut(s) 755
DseDI GACNNNNNNGTC 1 cut(s) 755
Eam1104I CTCTTC 7 cut(s) 93, 189, 432, 822, 861, 903, 1281
EarI CTCTTC 7 cut(s) 93, 189, 432, 822, 861, 903, 1281
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 15, 525
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 2 cut(s) 150, 177
Eco47I GGWCC 2 cut(s) 565, 922
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 3 cut(s) 690, 1415, 1856
Eco88I CYCGRG 1 cut(s) 1778
Eco91I GGTNACC 1 cut(s) 1505
EcoICRI GAGCTC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoO109I RGGNCCY 2 cut(s) 565, 922
EcoO65I GGTNACC 1 cut(s) 1505
EcoRII CCWGG 4 cut(s) 155, 924, 1048, 1213
EcoT14I CCWWGG 2 cut(s) 15, 525
EcoT22I ATGCAT 1 cut(s) 1763
EcoT38I GRGCYC 2 cut(s) 150, 177
EgeI GGCGCC 1 cut(s) 1860
EheI GGCGCC 1 cut(s) 1860
ErhI CCWWGG 2 cut(s) 15, 525
FaeI CATG 6 cut(s) 529, 944, 1046, 1190, 1321, 1375
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FaqI GGGAC 1 cut(s) 457
FatI CATG 6 cut(s) 525, 940, 1042, 1186, 1317, 1371
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 1 cut(s) 1722
Fnu4HI GCNGC 2 cut(s) 1269, 1461
FokI GGATG 2 cut(s) 500, 1667
FriOI GRGCYC 2 cut(s) 150, 177
Fsp4HI GCNGC 2 cut(s) 1269, 1461
FspBI CTAG 6 cut(s) 1080, 1142, 1146, 1223, 1304, 1335
GlaI GCGC 2 cut(s) 1464, 1860
GluI GCNGC 2 cut(s) 1269, 1461
GsaI CCCAGC 1 cut(s) 1298
GsuI CTGGAG 1 cut(s) 830
HaeII RGCGCY 1 cut(s) 1862
HaeIII GGCC 2 cut(s) 62, 1580
HapII CCGG 1 cut(s) 118
HhaI GCGC 2 cut(s) 1465, 1861
Hin1I GRCGYC 1 cut(s) 1859
Hin1II CATG 6 cut(s) 529, 944, 1046, 1190, 1321, 1375
Hin6I GCGC 2 cut(s) 1463, 1859
HinP1I GCGC 2 cut(s) 1463, 1859
HincII GTYRAC 2 cut(s) 744, 760
HindII GTYRAC 2 cut(s) 744, 760
HindIII AAGCTT 2 cut(s) 347, 545
HpaII CCGG 1 cut(s) 118
HphI GGTGA 2 cut(s) 274, 1517
Hpy166II GTNNAC 4 cut(s) 744, 760, 1723, 1753
Hpy188I TCNGA 8 cut(s) 143, 179, 583, 1039, 1437, 1548, 1586, 1786
Hpy188III TCNNGA 9 cut(s) 53, 130, 151, 359, 626, 1223, 1636, 1700, 1778
Hpy8I GTNNAC 4 cut(s) 744, 760, 1723, 1753
HpyAV CCTTC 8 cut(s) 85, 556, 566, 1083, 1116, 1390, 1609, 1831
HpyCH4III ACNGT 3 cut(s) 431, 1008, 1495
HpyF10VI GCNNNNNNNGC 3 cut(s) 877, 1151, 1891
HpyF3I CTNAG 5 cut(s) 231, 303, 582, 1436, 1742
Hsp92I GRCGYC 1 cut(s) 1859
Hsp92II CATG 6 cut(s) 529, 944, 1046, 1190, 1321, 1375
HspAI GCGC 2 cut(s) 1463, 1859
KasI GGCGCC 1 cut(s) 1858
KpnI GGTACC 1 cut(s) 1289
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 3 cut(s) 420, 970, 1427
LguI GCTCTTC 2 cut(s) 93, 861
LmnI GCTCC 5 cut(s) 180, 733, 855, 1030, 1399
Lsp1109I GCAGC 2 cut(s) 1255, 1472
LweI GCATC 3 cut(s) 238, 1645, 1770
MaeI CTAG 6 cut(s) 1080, 1142, 1146, 1223, 1304, 1335
MaeIII GTNAC 4 cut(s) 1082, 1090, 1379, 1505
MalI GATC 3 cut(s) 422, 972, 1429
MboI GATC 3 cut(s) 420, 970, 1427
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 1427
MhlI GDGCHC 5 cut(s) 105, 150, 177, 852, 1755
Mly113I GGCGCC 1 cut(s) 1859
MlyI GAGTC 4 cut(s) 127, 212, 224, 1790
MmeI TCCRAC 3 cut(s) 171, 288, 1405
Mph1103I ATGCAT 1 cut(s) 1763
MroXI GAANNNNTTC 2 cut(s) 1044, 1161
MseI TTAA 7 cut(s) 297, 330, 738, 1607, 1713, 1875, 1927
MslI CAYNNNNRTG 1 cut(s) 1808
MspA1I CMGCKG 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 5 cut(s) 118, 157, 926, 1050, 1215
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 4 cut(s) 157, 926, 1050, 1215
MwoI GCNNNNNNNGC 3 cut(s) 877, 1151, 1891
NarI GGCGCC 1 cut(s) 1859
NciI CCSGG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 525
NdeII GATC 3 cut(s) 420, 970, 1427
NlaIII CATG 6 cut(s) 529, 944, 1046, 1190, 1321, 1375
NlaIV GGNNCC 5 cut(s) 176, 539, 1128, 1287, 1860
NmuCI GTSAC 2 cut(s) 1090, 1505
NsiI ATGCAT 1 cut(s) 1763
NspI RCATGY 3 cut(s) 1046, 1190, 1321
PaeR7I CTCGAG 1 cut(s) 1778
PceI AGGCCT 1 cut(s) 62
PciI ACATGT 1 cut(s) 1042
PciSI GCTCTTC 2 cut(s) 93, 861
PdmI GAANNNNTTC 2 cut(s) 1044, 1161
PfeI GAWTC 8 cut(s) 227, 576, 613, 719, 887, 929, 1133, 1247
PflMI CCANNNNNTGG 3 cut(s) 901, 1424, 1868
PkrI GCNGC 2 cut(s) 1270, 1462
PleI GAGTC 4 cut(s) 127, 211, 223, 1789
PluTI GGCGCC 1 cut(s) 1862
PpsI GAGTC 4 cut(s) 127, 211, 223, 1789
PpuMI RGGWCCY 2 cut(s) 565, 922
PscI ACATGT 1 cut(s) 1042
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 2 cut(s) 565, 922
Psp6I CCWGG 4 cut(s) 155, 924, 1048, 1213
PspEI GGTNACC 1 cut(s) 1505
PspFI CCCAGC 1 cut(s) 1294
PspGI CCWGG 4 cut(s) 155, 924, 1048, 1213
PspN4I GGNNCC 5 cut(s) 176, 539, 1128, 1287, 1860
PspPI GGNCC 2 cut(s) 565, 922
PspPPI RGGWCCY 2 cut(s) 565, 922
PsuI RGATCY 1 cut(s) 1427
RsaI GTAC 3 cut(s) 822, 1287, 1677
RsaNI GTAC 3 cut(s) 821, 1286, 1676
RseI CAYNNNNRTG 1 cut(s) 1808
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 2 cut(s) 93, 861
SaqAI TTAA 7 cut(s) 297, 330, 738, 1607, 1713, 1875, 1927
SatI GCNGC 2 cut(s) 1269, 1461
Sau3AI GATC 3 cut(s) 420, 970, 1427
Sau96I GGNCC 2 cut(s) 565, 922
ScaI AGTACT 1 cut(s) 1677
SchI GAGTC 4 cut(s) 127, 212, 224, 1790
ScrFI CCNGG 5 cut(s) 118, 157, 926, 1050, 1215
SduI GDGCHC 5 cut(s) 105, 150, 177, 852, 1755
SfaNI GCATC 3 cut(s) 238, 1645, 1770
SfcI CTRYAG 2 cut(s) 1719, 1797
SfoI GGCGCC 1 cut(s) 1860
Sfr274I CTCGAG 1 cut(s) 1778
SinI GGWCC 2 cut(s) 565, 922
SlaI CTCGAG 1 cut(s) 1778
SmiMI CAYNNNNRTG 1 cut(s) 1808
SmlI CTYRAG 6 cut(s) 149, 515, 737, 947, 1342, 1778
SmoI CTYRAG 6 cut(s) 149, 515, 737, 947, 1342, 1778
SpeI ACTAGT 1 cut(s) 1303
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 3 cut(s) 82, 367, 1622
SspDI GGCGCC 1 cut(s) 1858
SspMI CTAG 6 cut(s) 1080, 1142, 1146, 1223, 1304, 1335
SstI GAGCTC 1 cut(s) 150
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 5 cut(s) 116, 155, 924, 1048, 1213
StyI CCWWGG 2 cut(s) 15, 525
TaaI ACNGT 3 cut(s) 431, 1008, 1495
TaqI TCGA 5 cut(s) 54, 625, 1376, 1779, 1822
TatI WGTACW 2 cut(s) 820, 1675
TfiI GAWTC 8 cut(s) 227, 576, 613, 719, 887, 929, 1133, 1247
Tru1I TTAA 7 cut(s) 297, 330, 738, 1607, 1713, 1875, 1927
Tru9I TTAA 7 cut(s) 297, 330, 738, 1607, 1713, 1875, 1927
TscAI CASTG 2 cut(s) 673, 1472
TseFI GTSAC 2 cut(s) 1090, 1505
TseI GCWGC 2 cut(s) 1268, 1460
Tsp45I GTSAC 2 cut(s) 1090, 1505
TspDTI ATGAA 9 cut(s) 464, 623, 957, 1065, 1090, 1275, 1378, 1531, 1719
TspGWI ACGGA 2 cut(s) 208, 1043
TspRI CASTG 2 cut(s) 673, 1472
Van91I CCANNNNNTGG 3 cut(s) 901, 1424, 1868
Vha464I CTTAAG 1 cut(s) 737
VneI GTGCAC 1 cut(s) 1751
VpaK11BI GGWCC 2 cut(s) 565, 922
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 4 cut(s) 451, 1498, 1787, 1851
XbaI TCTAGA 1 cut(s) 1222
XceI RCATGY 3 cut(s) 1046, 1190, 1321
XhoI CTCGAG 1 cut(s) 1778
XmiI GTMKAC 1 cut(s) 1722
XmnI GAANNNNTTC 2 cut(s) 1044, 1161
XspI CTAG 6 cut(s) 1080, 1142, 1146, 1223, 1304, 1335
ZrmI AGTACT 1 cut(s) 1677
Zsp2I ATGCAT 1 cut(s) 1763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.