FvH4_6g04410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000126
Physical Location & Seq
Forward (+)
2405097 .. 2409066
3970 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04410.t1

Sequence Viewer

Length: 2232 bp
ATGGAGGAGATCGCGTCGGAGCTGAAAAAATCGGAGATGAAACAGAGGAAGGTGAGGAAATTGTGGAAGGAGCTGGAGAAGGAGATTGATTCGACCCGGGAGGGGCTCCGGACCCGGTTGGTGGAGATCGGAGTTCGGGAGAAGGAGCTGGAGGCGAAGGAGTTGAGATTTGGAGAAGGTGAGAGTGAGTTGGAGTCGGTTAGGGTTTTGATTGAGGAGTATAGAGAGGAGATTGGGGTTAAGGAGAAGAGGTTTGAGGAGGTTGGGGGATTGGTTAGGGAGAAGGAGAGGGAGTATGTTTCGATTCGAAATCGGATGAAGGAGAGGTGTGAGGAGGTGGAGAAGTTGGATGATGAGATTGAGGTGAAGAAGAGGGAGCTGAAATCGGTTACGGAATGCGATTTGGGGGAGAAGATGGAGTTGAGAGAGAGGGAGTTTCGTATGCTGAAGAAATCGATGGAGGATTTGTGGTGTAAAGTTGAATTGAGAAAGAGGGAGGTGGATGGATGGGTTTTGATGCTTGAGTTAAAAGAGAAGGATGTTGAGGAACAAGTTGAGGAGTTTCGGTTGGTTGTTGAGAGGGTGAGGGAATGCATTGATGAGGTTCGGAGGGAAGAAGAGAATCTTGTTTCATGTGAGAAAGCGATACAGGAGAAGGAAATGTATTTGAGTTCACTCCACAAGTTGGTGCAAGAGTGTGAAAAGAAGTTGGAGTCACTGTCTCATGAAGTTGAAAGGAAAGAGAGGCATCTTGAAGAGGTTGAATTGAAGATGGCAAAATTTGGACATACTATAACTTCATGTGTAAGTGATTGTTCAAACATTGAGTGGGATGGTAGAGGCTTGAAGATGTTGATGTATGAGCCATTGAAGAGAATGTATTCATTGGCTACCGAAATTCCAGTGATTCTTAAAGCCTCATCTGACCCGGGAAAATTGGTATTGGATGCAATGCAAGGATTTTACCCTTCAAGTTCGACTCTGGACAACAAGGAGACTCATCTTGATTTGACAGTTTTTAGGAGGGGTTGTATTGTTTTGTTAGAGCAATTGAAGAAAATTTCACCACAAATTAATGCATGGGTGAGAAACGAAGCAATTAAGTTGGCGGCTGATTGGAAGAGTAAGATGACAGTATCTAGTGAGAATGCACAAGAGATTTGGGGGTTTTTGCGGCTTGTTGATGCGTATGGATTGAGTTCAATGTATGATGTGAGAGAGCTTCAAAGCCTTCTTGGTGTTGTTCAAAAGCCTAAACAAGCATCTCAATTAAGTAGGGATCTTGGTATCAAAGATAATGCACTTGGGACCAGCATCATATCATCCCTTATCAAGACAGAGGAACCAGAATCTTCACTGGCTATAAATGCTGCAACTCTCTCTTTTCCGAATTCGTCTTCCCAGAATGACATGTCCGCTTTTCTTTCATTGGTCTCTGACCCAGCAGCACATGTCTTGAATGGAGTGCGTGGATCATTTTCTCGTTACTGGACAAATGAAGATGTTCGTTTCAAAGAACATATTATGTTGAATAACATGGCTTGGTTCAAGTGTCTAACGGTTGTCTCACGGCATATTGAACCTCAAGTGAAAGAAGATGCAAAACATCTAGCAGCCGAATGGAAAGCAAAGATGATAGGCAATACTGAAAATTCAGTTGGGACTTTAGGATTTTTGATGTTTATATCTACATATGGCTTGGTTTGTTCATTGGATACAGAGGAGACTATAAACCTTCTTGGGGTGGTATCTCAGAATAAGCGGGCTTTAGATTTTTGTCACACACATGGTTTTGCAGAAAAGATCGCTGATTTTATTCGGAATCTGATAGAAAGGAAGCAAGTGATGGATGCTATTGGATTTATTTGCACCTTCAACTTAGCAGACAAGATCCCTGTAATACCACTCTTAAAACAATATGTGGAGGATGCAAAGAAGTGTTCAGAAGTAACTTGGAGCTTAAAGGAACTTCATGAGGAAAAGGTTAAGATTGTAGACAACCACATAAGTGATCTAAGAGCTGGAAAGCAATGCATCCAAGAATACAGTCTCGAGTCCGAAGACCCATATGCAGACATTGACATGCAAATAGCTCAGCTGGAAATACTGAAGGATAATTGGAGACGCTCGGCACCAACTCTTGGCTCCAATATTGCTGAATCACAAGTGCAGAGAAAAAGAAAGAAGCCTAATACTAGTAGTTTTGCCTGTGAATTTCCATCACAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

744

Amino Acids

85.79

Weight (kDa)

5.5

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 278 - 447 2.4e-32 Frigida-like protein
Frigida PF07899 466 - 710 4.2e-43 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 2131
AccB7I CCANNNNNTGG 2 cut(s) 685, 2141
AccI GTMKAC 1 cut(s) 1995
AccII CGCG 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 4 cut(s) 1109, 1174, 1416, 1762
AclWI GGATC 3 cut(s) 1287, 1480, 1885
AcsI RAATTY 6 cut(s) 779, 897, 1059, 1390, 1651, 2213
AcuI CTGAAG 2 cut(s) 467, 2129
AfiI CCNNNNNNNGG 5 cut(s) 102, 121, 685, 1741, 2141
AflIII ACRYGT 2 cut(s) 1410, 1450
AhlI ACTAGT 1 cut(s) 2195
AjuI GAANNNNNNNTTGG 2 cut(s) 1641, 1673
AleI CACNNNNGTG 1 cut(s) 2007
AluBI AGCT 9 cut(s) 22, 73, 148, 379, 1222, 1959, 2021, 2093, 2098
AluI AGCT 9 cut(s) 22, 73, 148, 379, 1222, 1959, 2021, 2093, 2098
Alw26I GTCTC 7 cut(s) 726, 989, 1438, 1570, 1718, 2054, 2116
AlwI GGATC 3 cut(s) 1287, 1480, 1885
Ama87I CYCGRG 3 cut(s) 96, 928, 2051
Aor13HI TCCGGA 1 cut(s) 108
ApeKI GCWGC 3 cut(s) 1370, 1445, 1613
ApoI RAATTY 6 cut(s) 779, 897, 1059, 1390, 1651, 2213
AseI ATTAAT 1 cut(s) 1074
Asp700I GAANNNNTTC 2 cut(s) 880, 1503
AspS9I GGNCC 2 cut(s) 111, 1308
AsuC2I CCSGG 5 cut(s) 97, 98, 115, 929, 930
AsuHPI GGTGA 6 cut(s) 64, 191, 376, 595, 1056, 1096
AsuII TTCGAA 1 cut(s) 307
AvaI CYCGRG 3 cut(s) 96, 928, 2051
AvaII GGWCC 2 cut(s) 111, 1308
BanI GGYRCC 1 cut(s) 2131
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 1389, 2067
BbvI GCAGC 3 cut(s) 1357, 1457, 1625
BccI CCATC 8 cut(s) 409, 451, 497, 501, 766, 827, 1840, 2227
BceAI ACGGC 1 cut(s) 1586
BciVI GTATCC 1 cut(s) 1708
BcnI CCSGG 5 cut(s) 97, 98, 115, 929, 930
BcoDI GTCTC 7 cut(s) 726, 989, 1438, 1570, 1718, 2054, 2116
BcuI ACTAGT 1 cut(s) 2195
BfaI CTAG 3 cut(s) 1140, 1610, 2196
BfuI GTATCC 1 cut(s) 1708
BisI GCNGC 5 cut(s) 1110, 1175, 1371, 1446, 1614
BlpI GCTNAGC 1 cut(s) 2094
BlsI GCNGC 5 cut(s) 1111, 1176, 1372, 1447, 1615
Bme1390I CCNGG 5 cut(s) 97, 98, 115, 929, 930
Bme18I GGWCC 2 cut(s) 111, 1308
BmeT110I CYCGRG 3 cut(s) 96, 928, 2051
BmgT120I GGNCC 2 cut(s) 111, 1308
BmiI GGNNCC 6 cut(s) 107, 113, 1309, 1344, 2133, 2146
BmrFI CCNGG 5 cut(s) 97, 98, 115, 929, 930
BpiI GAAGAC 2 cut(s) 1389, 2067
BpmI CTGGAG 2 cut(s) 95, 170
Bpu1102I GCTNAGC 1 cut(s) 2094
Bpu14I TTCGAA 1 cut(s) 307
BpuEI CTTGAG 2 cut(s) 542, 1569
BpuMI CCSGG 5 cut(s) 97, 98, 115, 929, 930
Bsa29I ATCGAT 1 cut(s) 455
BsaI GGTCTC 1 cut(s) 1438
BsaJI CCNNGG 2 cut(s) 96, 928
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 5 cut(s) 102, 121, 685, 1741, 2141
Bse1I ACTGG 3 cut(s) 902, 1362, 1493
Bse3DI GCAATG 2 cut(s) 957, 2036
BseAI TCCGGA 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 96, 928
BseLI CCNNNNNNNGG 5 cut(s) 102, 121, 685, 1741, 2141
BseMI GCAATG 2 cut(s) 957, 2036
BseMII CTCAG 2 cut(s) 1766, 2108
BseNI ACTGG 3 cut(s) 902, 1362, 1493
BseRI GAGGAG 7 cut(s) 20, 230, 242, 272, 347, 572, 1736
BseXI GCAGC 3 cut(s) 1357, 1457, 1625
BseYI CCCAGC 1 cut(s) 1441
BsgI GTGCAG 1 cut(s) 2189
Bsh1236I CGCG 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 2131
BshVI ATCGAT 1 cut(s) 455
BsiHKCI CYCGRG 3 cut(s) 96, 928, 2051
BsiSI CCGG 4 cut(s) 97, 109, 115, 929
BslFI GGGAC 2 cut(s) 1321, 1675
BslI CCNNNNNNNGG 5 cut(s) 102, 121, 685, 1741, 2141
BsmAI GTCTC 7 cut(s) 726, 989, 1438, 1570, 1718, 2054, 2116
BsmBI CGTCTC 1 cut(s) 2116
BsmFI GGGAC 2 cut(s) 1321, 1675
BsmI GAATGC 3 cut(s) 401, 596, 1153
Bso31I GGTCTC 1 cut(s) 1438
BsoBI CYCGRG 3 cut(s) 96, 928, 2051
Bsp119I TTCGAA 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 108
Bsp143I GATC 7 cut(s) 9, 126, 1279, 1472, 1803, 1890, 2011
Bsp1720I GCTNAGC 1 cut(s) 2094
BspACI CCGC 4 cut(s) 1109, 1174, 1416, 1762
BspCNI CTCAG 2 cut(s) 1765, 2107
BspDI ATCGAT 1 cut(s) 455
BspEI TCCGGA 1 cut(s) 108
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 2 cut(s) 724, 1972
BspLI GGNNCC 6 cut(s) 107, 113, 1309, 1344, 2133, 2146
BspPI GGATC 3 cut(s) 1287, 1480, 1885
BspT104I TTCGAA 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 2131
BspTNI GGTCTC 1 cut(s) 1438
BsrDI GCAATG 2 cut(s) 957, 2036
BsrI ACTGG 3 cut(s) 902, 1362, 1493
BssECI CCNNGG 2 cut(s) 96, 928
BssMI GATC 7 cut(s) 9, 126, 1279, 1472, 1803, 1890, 2011
Bst4CI ACNGT 6 cut(s) 720, 1015, 1135, 1561, 2048, 2229
Bst6I CTCTTC 6 cut(s) 242, 365, 612, 750, 866, 1115
BstBI TTCGAA 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 1764
BstDEI CTNAG 4 cut(s) 1752, 1879, 2015, 2094
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 7 cut(s) 12, 129, 1282, 1475, 1806, 1893, 2014
BstMAI GTCTC 7 cut(s) 726, 989, 1438, 1570, 1718, 2054, 2116
BstMBI GATC 7 cut(s) 9, 126, 1279, 1472, 1803, 1890, 2011
BstMWI GCNNNNNNNGC 1 cut(s) 1367
BstNSI RCATGY 3 cut(s) 1414, 1454, 2086
BstSCI CCNGG 5 cut(s) 95, 96, 113, 927, 928
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 1357, 1457, 1625
BstV2I GAAGAC 2 cut(s) 1389, 2067
BstX2I RGATCY 2 cut(s) 1279, 1890
BstYI RGATCY 2 cut(s) 1279, 1890
Bsu15I ATCGAT 1 cut(s) 455
BsuI GTATCC 1 cut(s) 1708
BsuTUI ATCGAT 1 cut(s) 455
BtsIMutI CAGTG 3 cut(s) 716, 909, 1355
Cac8I GCNNGC 1 cut(s) 1764
CciI TCATGA 2 cut(s) 724, 1972
Cfr13I GGNCC 2 cut(s) 111, 1308
Cfr9I CCCGGG 2 cut(s) 96, 928
ClaI ATCGAT 1 cut(s) 455
CseI GACGC 2 cut(s) 3, 2133
DdeI CTNAG 4 cut(s) 1752, 1879, 2015, 2094
DpnI GATC 7 cut(s) 11, 128, 1281, 1474, 1805, 1892, 2013
DpnII GATC 7 cut(s) 9, 126, 1279, 1472, 1803, 1890, 2011
Eam1104I CTCTTC 6 cut(s) 242, 365, 612, 750, 866, 1115
EarI CTCTTC 6 cut(s) 242, 365, 612, 750, 866, 1115
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 1438
Eco47I GGWCC 2 cut(s) 111, 1308
Eco57I CTGAAG 2 cut(s) 467, 2129
Eco88I CYCGRG 3 cut(s) 96, 928, 2051
EcoRI GAATTC 1 cut(s) 1390
EcoT22I ATGCAT 3 cut(s) 596, 1081, 2036
EcoT38I GRGCYC 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 2116
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 2 cut(s) 1321, 1675
FauI CCCGC 1 cut(s) 1755
FauNDI CATATG 2 cut(s) 1693, 2068
FblI GTMKAC 1 cut(s) 1995
Fnu4HI GCNGC 5 cut(s) 1110, 1175, 1371, 1446, 1614
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 5 cut(s) 1110, 1175, 1371, 1446, 1614
FspBI CTAG 3 cut(s) 1140, 1610, 2196
GluI GCNGC 5 cut(s) 1110, 1175, 1371, 1446, 1614
GsaI CCCAGC 1 cut(s) 1445
GsuI CTGGAG 2 cut(s) 95, 170
HapII CCGG 4 cut(s) 97, 109, 115, 929
HgaI GACGC 2 cut(s) 3, 2133
HpaII CCGG 4 cut(s) 97, 109, 115, 929
HphI GGTGA 6 cut(s) 64, 191, 376, 595, 1056, 1096
Hpy166II GTNNAC 2 cut(s) 674, 1996
Hpy8I GTNNAC 2 cut(s) 674, 1996
Hpy99I CGWCG 1 cut(s) 19
HpyCH4III ACNGT 6 cut(s) 720, 1015, 1135, 1561, 2048, 2229
HpyF10VI GCNNNNNNNGC 1 cut(s) 1367
HpyF3I CTNAG 4 cut(s) 1752, 1879, 2015, 2094
Kpn2I TCCGGA 1 cut(s) 108
Kzo9I GATC 7 cut(s) 9, 126, 1279, 1472, 1803, 1890, 2011
LmnI GCTCC 7 cut(s) 19, 70, 111, 145, 376, 1956, 2150
Lsp1109I GCAGC 3 cut(s) 1357, 1457, 1625
MaeI CTAG 3 cut(s) 1140, 1610, 2196
MaeIII GTNAC 5 cut(s) 388, 714, 1484, 1778, 1948
MalI GATC 7 cut(s) 11, 128, 1281, 1474, 1805, 1892, 2013
MboI GATC 7 cut(s) 9, 126, 1279, 1472, 1803, 1890, 2011
MfeI CAATTG 1 cut(s) 1049
MflI RGATCY 2 cut(s) 1279, 1890
MhlI GDGCHC 1 cut(s) 108
MlyI GAGTC 5 cut(s) 203, 722, 973, 991, 2063
MmeI TCCRAC 3 cut(s) 171, 327, 690
Mph1103I ATGCAT 3 cut(s) 596, 1081, 2036
MroI TCCGGA 1 cut(s) 108
MroXI GAANNNNTTC 2 cut(s) 880, 1503
MseI TTAA 9 cut(s) 240, 527, 912, 1074, 1101, 1271, 1910, 1961, 1986
MslI CAYNNNNRTG 3 cut(s) 1785, 2007, 2081
MspA1I CMGCKG 1 cut(s) 2098
MspI CCGG 4 cut(s) 97, 109, 115, 929
MspR9I CCNGG 5 cut(s) 97, 98, 115, 929, 930
MunI CAATTG 1 cut(s) 1049
Mva1269I GAATGC 3 cut(s) 401, 596, 1153
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 1367
NciI CCSGG 5 cut(s) 97, 98, 115, 929, 930
NdeI CATATG 2 cut(s) 1693, 2068
NdeII GATC 7 cut(s) 9, 126, 1279, 1472, 1803, 1890, 2011
NlaIV GGNNCC 6 cut(s) 107, 113, 1309, 1344, 2133, 2146
NmeAIII GCCGAG 1 cut(s) 2108
NmuCI GTSAC 2 cut(s) 714, 1778
NsiI ATGCAT 3 cut(s) 596, 1081, 2036
NspI RCATGY 3 cut(s) 1414, 1454, 2086
NspV TTCGAA 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 2007
PaeR7I CTCGAG 1 cut(s) 2051
PagI TCATGA 2 cut(s) 724, 1972
PciI ACATGT 2 cut(s) 1410, 1450
PctI GAATGC 3 cut(s) 401, 596, 1153
PdmI GAANNNNTTC 2 cut(s) 880, 1503
PfeI GAWTC 7 cut(s) 89, 304, 622, 907, 1349, 1822, 2159
PflMI CCANNNNNTGG 2 cut(s) 685, 2141
PkrI GCNGC 5 cut(s) 1111, 1176, 1372, 1447, 1615
PleI GAGTC 5 cut(s) 202, 721, 973, 991, 2062
PpsI GAGTC 5 cut(s) 202, 721, 973, 991, 2062
PscI ACATGT 2 cut(s) 1410, 1450
PshBI ATTAAT 1 cut(s) 1074
PspFI CCCAGC 1 cut(s) 1441
PspN4I GGNNCC 6 cut(s) 107, 113, 1309, 1344, 2133, 2146
PspPI GGNCC 2 cut(s) 111, 1308
PsuI RGATCY 2 cut(s) 1279, 1890
PvuII CAGCTG 1 cut(s) 2098
RseI CAYNNNNRTG 3 cut(s) 1785, 2007, 2081
SaqAI TTAA 9 cut(s) 240, 527, 912, 1074, 1101, 1271, 1910, 1961, 1986
SatI GCNGC 5 cut(s) 1110, 1175, 1371, 1446, 1614
Sau3AI GATC 7 cut(s) 9, 126, 1279, 1472, 1803, 1890, 2011
Sau96I GGNCC 2 cut(s) 111, 1308
SchI GAGTC 5 cut(s) 203, 722, 973, 991, 2063
ScrFI CCNGG 5 cut(s) 97, 98, 115, 929, 930
SduI GDGCHC 1 cut(s) 108
Sfr274I CTCGAG 1 cut(s) 2051
SfuI TTCGAA 1 cut(s) 307
SinI GGWCC 2 cut(s) 111, 1308
SlaI CTCGAG 1 cut(s) 2051
SmaI CCCGGG 2 cut(s) 98, 930
SmiMI CAYNNNNRTG 3 cut(s) 1785, 2007, 2081
SmlI CTYRAG 3 cut(s) 521, 1584, 2051
SmoI CTYRAG 3 cut(s) 521, 1584, 2051
SpeI ACTAGT 1 cut(s) 2195
SsiI CCGC 4 cut(s) 1109, 1174, 1416, 1762
SspI AATATT 1 cut(s) 2152
SspMI CTAG 3 cut(s) 1140, 1610, 2196
StyD4I CCNGG 5 cut(s) 95, 96, 113, 927, 928
TaaI ACNGT 6 cut(s) 720, 1015, 1135, 1561, 2048, 2229
TaqI TCGA 6 cut(s) 92, 302, 307, 455, 977, 2052
TauI GCSGC 2 cut(s) 1112, 1177
TfiI GAWTC 7 cut(s) 89, 304, 622, 907, 1349, 1822, 2159
Tru1I TTAA 9 cut(s) 240, 527, 912, 1074, 1101, 1271, 1910, 1961, 1986
Tru9I TTAA 9 cut(s) 240, 527, 912, 1074, 1101, 1271, 1910, 1961, 1986
TscAI CASTG 3 cut(s) 723, 909, 1362
TseFI GTSAC 2 cut(s) 714, 1778
TseI GCWGC 3 cut(s) 1370, 1445, 1613
Tsp45I GTSAC 2 cut(s) 714, 1778
TspGWI ACGGA 1 cut(s) 407
TspMI CCCGGG 2 cut(s) 96, 928
TspRI CASTG 3 cut(s) 723, 909, 1362
Van91I CCANNNNNTGG 2 cut(s) 685, 2141
VpaK11BI GGWCC 2 cut(s) 111, 1308
VspI ATTAAT 1 cut(s) 1074
XapI RAATTY 6 cut(s) 779, 897, 1059, 1390, 1651, 2213
XceI RCATGY 3 cut(s) 1414, 1454, 2086
XhoI CTCGAG 1 cut(s) 2051
XmaI CCCGGG 2 cut(s) 96, 928
XmiI GTMKAC 1 cut(s) 1995
XmnI GAANNNNTTC 2 cut(s) 880, 1503
XspI CTAG 3 cut(s) 1140, 1610, 2196
Zsp2I ATGCAT 3 cut(s) 596, 1081, 2036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.