Rmu_sc0005888.1_g000007

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005888.1
OG0000126
Physical Location & Seq
Reverse (-)
35463 .. 44344
8882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005888.1_g000007.1.cds

Sequence Viewer

Length: 3600 bp
atggtgatggatggtgatctggctcgatttgctttctttggcgatgctcacggttggggtgggaatcagcctggtcgtggtgatctagcaatggctctgtgcagaagctttgcagcggcgtggcaagttggaggtggtggtggtctagacgctagggtgtcctcatcaattggcaccatctgggccgtgttgggccagaactataaccccaacatttggctcgtgttgttggctgccttgtgggctctgtgcagaagctttgcagcggcgtggcaagttggaggtggtggtggtctagacgctagggtgtcctcatcaattggcgccatctgggccgtgttgggccagaactataaccccaacatttggctcgtgttgttggctgcccttgtattgtggggttgctggagtagggtattttgggcccgccgtcgtgaatcttcttgtgaacttgttgttgctgaagcatccaaaaagactgagattgcaggcttggaggcctcggagcatgaagaaggaatggaagacgaggagagcaccaacctcatcgcaggggtctttgtgcctcgtgggcgttacccttgcttggctggttccgtaaccgttatggtcgctgtactatgtagacgaggagagcaccaacctcatcgcaggggtctttgtgcctcgtgtaggctcccgaggagactaggatcaaagcacgttgacagagggtttggtggcactgatagccggctcctgaggattctgggactggagtgtggtcaccgaaccgagctgagggaaaatatggagaatgatccagacccggaaatggaagagttggaggcgaggcagaggagcctaggcagagccttcgactccttgaatgtccaagcttcttcggtcctgttgttcaccgcgaagtggaaggagctcgaggaccattttgagtcgacccggaaggagctccggacccggttggcggagctggaggagcgcgtgaagctagtcgcggaggtggaggcgagggcggtgaggttgaagacggaaatggaggctaaagctaaggacttgggggaaatggaggaggtggtggagcagaagcggcgagaggttgaagaaggtaataggcagttaaccgagctgagggaaaatatggagaatgatccagacccggaaatggaagagttggaggcgaggcagaggagcctaggcagagccttcgactccttgaatgtccaagcttcttcggtcctgttgttcaccgcgcagtggaaggagctcgaggaccattttgagtcgtcccggaaggagctccggacccggttggcggagctggaggagcgcgtgaagctagtcgcggaggtggaggcgagggcggtgaggttgaagacggaaatggaggctaaagctaaggacttgggggaaatggaggaggtggtggagcagaagcggcgagaggttgaagaaggtaataggcagttgtgctgtattaacttgttgattgaagaaaacagagaagagcttagagtttgtgagagtcagtgttcgcattttgatagattggttaaggagaggtctaggaagttgaattgggttgagaaaagagtagaggagaagttgaatcgggttgaggtggaagagaggaagttagatgagattagggggttgattgggaagaaaaggagagaacttgaagagtgtgagggtgagttggagttgaaagaggagaggttaaggttggtggagaaatcgattgtgaattgcgataagatacttgatttgaaggagaaattggttagtgtagtggatttgaaggtgaaagatttctgcttgctggagaaatcaatggaggagtggtcatgtaagcttgaaatgaaggagagggagctcgaaggatgtgttgctaagatagaagcaaaagagggacaagttgatagaaagattgaggagctgaatttggttcatagcaagttccttgatgaggttcagttgaaggagaaacatctcggttcgcttgaagaatcggtactagagcgcgagaaggatttgcttttctcagtccagaagttagtacaagagtgttgccagggaagtgagttcactagggatggaagaggactagagcagttcatggatgagcatttgatgagaattgattccatgtgtatcgaactgtcagcgattcttaaagagtcctcagactcggcgaaattggttttggatgcaatgcaggggttctatccagacaacagggagttacattttgatttgatggttaggagaagaggttgttgtcttttgttaaaggagttgaagacaatctccccacaaattagtcctcaggtgagagaggaggcaacaaaactggctgctaattggaaggccaagatgacaggggctagtgacaatgacttggaggttctgggcttcttgaggcttgttgctgcttatgatttggcttctatttacgatgccaaggagcttaaagggcttctttctagtgtttctaatggtcagcaagcagctcatataggccaggcccttggttttgctgcacctgcatctcttcaaagttcgctagaacctgcaaaactcgtgttggattggatgcaaactgatttatcacaatactggacaaaaggtgatgtttggctcgaagcaacttcaatcaaaacctgcatttttgtattacagcagctaatgagagtcgtcccccatgtcggacaacatgtgaaagaggatgcaatgaagttggcagtccaatggaaagcaaaattgagagctaatgctgaaaatgcctgggagattttgggctttttgcactttatagctgcatacgggttgatttttactttaaatgttgatgagattgtaacgcttcttgggatgattgctcagcataaacaggctctagaattctgttggaaacttccttctgaagataagatccctggagagtttatccactgtcttgttgaaaggaagcagctgatggaggccattggattgatttgtaccttcaaattaattaacagtattcccccagtgccactcttaaaagaatacgtgaaggaaaagatgaagtgttgcagagatggttacacaaaagagaaattacatgatgaaaaggttaaggttgtggaccagcacataactgatctaagagcggtcattaacctcatcaaagactacaacctggaattggaatatccatcttcgaatgttgaaatggaaataactcaactggagaaagtaaaggagaaatggagaatagttcagtcagggaatgtggataaagagcagaaaagaggaaccaaacgtcgtagcagcactccccccactaaactcgaaccacaacagcagcccaataaatctcatcggacagctgtaatatctcctaggcctcatccattgcaactttacaccccggtgtatctgcagccaaatgcttcacctttgctgttacactccaggcagtttggcaccattcagaatgctggaatactcccaagtcctagttatgctggaatactccacccaagtcctagttatcgtcctaatctacccccatggaaccacctccccaactttggtagtgccttctttcctttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

1199

Amino Acids

136.34

Weight (kDa)

5.85

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2551
Acc36I ACCTGC 3 cut(s) 2551, 2578, 2669
AccB1I GGYRCC 3 cut(s) 173, 323, 3467
AccB7I CCANNNNNTGG 2 cut(s) 216, 366
AccBSI CCGCTC 1 cut(s) 3152
AccI GTMKAC 2 cut(s) 625, 935
AccII CGCG 7 cut(s) 902, 981, 995, 1250, 1329, 1343, 2022
AccIII TCCGGA 2 cut(s) 951, 1299
AclWI GGATC 4 cut(s) 700, 794, 1142, 2926
AcsI RAATTY 2 cut(s) 1939, 2900
AcuI CTGAAG 2 cut(s) 483, 2943
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 4 cut(s) 618, 2013, 2058, 3001
AflIII ACRYGT 1 cut(s) 2713
AjnI CCWGG 7 cut(s) 70, 2070, 2520, 2783, 2935, 3180, 3455
AjuI GAANNNNNNNTTGG 4 cut(s) 1760, 1792, 2186, 2218
AleI CACNNNNGTG 1 cut(s) 3413
Alw21I GWGCWC 7 cut(s) 539, 639, 918, 951, 1266, 1299, 1875
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 4 cut(s) 700, 794, 1142, 2926
Ama87I CYCGRG 3 cut(s) 679, 917, 1265
Aor13HI TCCGGA 2 cut(s) 951, 1299
ApaI GGGCCC 1 cut(s) 427
ApoI RAATTY 2 cut(s) 1939, 2900
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AseI ATTAAT 1 cut(s) 3011
Asp700I GAANNNNTTC 2 cut(s) 1808, 2140
AspA2I CCTAGG 3 cut(s) 844, 1192, 3383
AspLEI GCGC 5 cut(s) 326, 981, 1252, 1329, 2022
AsuC2I CCSGG 7 cut(s) 809, 940, 958, 1157, 1288, 1306, 3413
AsuII TTCGAA 1 cut(s) 3203
AvaI CYCGRG 3 cut(s) 679, 917, 1265
AvaII GGWCC 7 cut(s) 886, 922, 954, 1234, 1270, 1302, 3127
AvrII CCTAGG 3 cut(s) 844, 1192, 3383
AxyI CCTNAGG 2 cut(s) 740, 2325
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 3 cut(s) 173, 323, 3467
BanII GRGCYC 7 cut(s) 247, 427, 918, 951, 1266, 1299, 1875
BarI GAAGNNNNNNTAC 2 cut(s) 1995, 2027
BauI CACGAG 5 cut(s) 221, 371, 567, 667, 2579
BbsI GAAGAC 4 cut(s) 531, 1031, 1379, 2306
Bbv12I GWGCWC 7 cut(s) 539, 639, 918, 951, 1266, 1299, 1875
BbvCI CCTCAGC 2 cut(s) 779, 1127
BccI CCATC 8 cut(s) 5, 185, 335, 2087, 2251, 2971, 3074, 3205
BceAI ACGGC 3 cut(s) 170, 320, 414
BcgI CGANNNNNNTGC 4 cut(s) 838, 872, 1186, 1220
BciT130I CCWGG 7 cut(s) 72, 2072, 2522, 2785, 2937, 3182, 3457
BcnI CCSGG 7 cut(s) 809, 940, 958, 1157, 1288, 1306, 3413
BcoDI GTCTC 1 cut(s) 679
BfmI CTRYAG 1 cut(s) 3422
BfoI RGCGCY 1 cut(s) 327
BfuAI ACCTGC 3 cut(s) 2551, 2578, 2669
BglI GCCNNNNNGGC 3 cut(s) 242, 332, 571
BlnI CCTAGG 3 cut(s) 844, 1192, 3383
BlpI GCTNAGC 1 cut(s) 2880
Bme18I GGWCC 7 cut(s) 886, 922, 954, 1234, 1270, 1302, 3127
BmeT110I CYCGRG 3 cut(s) 679, 917, 1265
BmrI ACTGGG 1 cut(s) 3023
BmsI GCATC 7 cut(s) 34, 476, 2197, 2446, 2555, 2583, 2716
BmuI ACTGGG 1 cut(s) 3023
BpiI GAAGAC 4 cut(s) 531, 1031, 1379, 2306
BpmI CTGGAG 8 cut(s) 427, 776, 992, 1340, 1841, 2958, 3251, 3439
Bpu10I CCTNAGC 4 cut(s) 779, 1047, 1127, 1395
Bpu1102I GCTNAGC 1 cut(s) 2880
Bpu14I TTCGAA 1 cut(s) 3203
BpuEI CTTGAG 1 cut(s) 2437
BpuMI CCSGG 7 cut(s) 809, 940, 958, 1157, 1288, 1306, 3413
Bsa29I ATCGAT 1 cut(s) 1736
BsaAI YACGTR 1 cut(s) 3052
BsaBI GATNNNNATC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 324
BsaWI WCCGGW 2 cut(s) 951, 1299
BsaXI ACNNNNNCTCC 4 cut(s) 1826, 1856, 2257, 2287
Bse118I RCCGGY 1 cut(s) 732
Bse1I ACTGG 5 cut(s) 759, 2355, 2621, 3029, 3234
Bse21I CCTNAGG 2 cut(s) 740, 2325
Bse3DI GCAATG 4 cut(s) 96, 2217, 2736, 3395
Bse8I GATNNNNATC 1 cut(s) 15
BseAI TCCGGA 2 cut(s) 951, 1299
BseBI CCWGG 7 cut(s) 72, 2072, 2522, 2785, 2937, 3182, 3457
BseCI ATCGAT 1 cut(s) 1736
BseJI GATNNNNATC 1 cut(s) 15
BseMI GCAATG 4 cut(s) 96, 2217, 2736, 3395
BseMII CTCAG 8 cut(s) 471, 731, 770, 1118, 2055, 2196, 2339, 2894
BseNI ACTGG 5 cut(s) 759, 2355, 2621, 3029, 3234
BseSI GKGCMC 1 cut(s) 427
BsgI GTGCAG 3 cut(s) 121, 271, 2523
Bsh1236I CGCG 7 cut(s) 902, 981, 995, 1250, 1329, 1343, 2022
BshNI GGYRCC 3 cut(s) 173, 323, 3467
BshVI ATCGAT 1 cut(s) 1736
BsiHKAI GWGCWC 7 cut(s) 539, 639, 918, 951, 1266, 1299, 1875
BsiHKCI CYCGRG 3 cut(s) 679, 917, 1265
BslFI GGGAC 4 cut(s) 765, 1270, 1923, 2681
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 4 cut(s) 765, 1270, 1923, 2681
BsmI GAATGC 1 cut(s) 3484
BsoBI CYCGRG 3 cut(s) 679, 917, 1265
Bsp119I TTCGAA 1 cut(s) 3203
Bsp120I GGGCCC 1 cut(s) 423
Bsp1286I GDGCHC 9 cut(s) 247, 427, 539, 639, 918, 951, 1266, 1299, 1875
Bsp13I TCCGGA 2 cut(s) 951, 1299
Bsp143I GATC 7 cut(s) 16, 82, 692, 799, 1147, 2931, 3142
Bsp1720I GCTNAGC 1 cut(s) 2880
Bsp19I CCATGG 1 cut(s) 3554
BspCNI CTCAG 8 cut(s) 472, 732, 771, 1119, 2054, 2195, 2338, 2893
BspDI ATCGAT 1 cut(s) 1736
BspEI TCCGGA 2 cut(s) 951, 1299
BspFNI CGCG 7 cut(s) 902, 981, 995, 1250, 1329, 1343, 2022
BspMAI CTGCAG 1 cut(s) 3426
BspMI ACCTGC 3 cut(s) 2551, 2578, 2669
BspPI GGATC 4 cut(s) 700, 794, 1142, 2926
BspQI GCTCTTC 1 cut(s) 1497
BspT104I TTCGAA 1 cut(s) 3203
BspT107I GGYRCC 3 cut(s) 173, 323, 3467
BsrBI CCGCTC 1 cut(s) 3152
BsrDI GCAATG 4 cut(s) 96, 2217, 2736, 3395
BsrFI RCCGGY 1 cut(s) 732
BsrI ACTGG 5 cut(s) 759, 2355, 2621, 3029, 3234
BssAI RCCGGY 1 cut(s) 732
BssMI GATC 7 cut(s) 16, 82, 692, 799, 1147, 2931, 3142
BssNI GRCGYC 1 cut(s) 324
BssSI CACGAG 5 cut(s) 221, 371, 567, 667, 2579
BssT1I CCWWGG 6 cut(s) 844, 1192, 2460, 2527, 3383, 3554
Bst2BI CACGAG 5 cut(s) 221, 371, 567, 667, 2579
Bst2UI CCWGG 7 cut(s) 72, 2072, 2522, 2785, 2937, 3182, 3457
Bst4CI ACNGT 5 cut(s) 53, 604, 2160, 2954, 3020
Bst6I CTCTTC 8 cut(s) 813, 1161, 1497, 1617, 1674, 2092, 2263, 2556
BstACI GRCGYC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 3052
BstBI TTCGAA 1 cut(s) 3203
BstC8I GCNNGC 5 cut(s) 427, 490, 734, 1817, 2505
BstDSI CCRYGG 1 cut(s) 3554
BstEII GGTNACC 1 cut(s) 764
BstENI CCTNNNNNAGG 2 cut(s) 670, 1964
BstFNI CGCG 7 cut(s) 902, 981, 995, 1250, 1329, 1343, 2022
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 5 cut(s) 326, 981, 1252, 1329, 2022
BstKTI GATC 7 cut(s) 19, 85, 695, 802, 1150, 2934, 3145
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 7 cut(s) 16, 82, 692, 799, 1147, 2931, 3142
BstNI CCWGG 7 cut(s) 72, 2072, 2522, 2785, 2937, 3182, 3457
BstNSI RCATGY 1 cut(s) 2717
BstPI GGTNACC 1 cut(s) 764
BstSFI CTRYAG 1 cut(s) 3422
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 7 cut(s) 902, 981, 995, 1250, 1329, 1343, 2022
BstV2I GAAGAC 4 cut(s) 531, 1031, 1379, 2306
BstX2I RGATCY 1 cut(s) 2931
BstXI CCANNNNNNTGG 1 cut(s) 2528
BstYI RGATCY 1 cut(s) 2931
Bsu15I ATCGAT 1 cut(s) 1736
Bsu36I CCTNAGG 2 cut(s) 740, 2325
BsuTUI ATCGAT 1 cut(s) 1736
BtgI CCRYGG 1 cut(s) 3554
BtgZI GCGATG 3 cut(s) 57, 532, 632
BtsI GCAGTG 1 cut(s) 1259
BtsIMutI CAGTG 5 cut(s) 723, 1259, 1532, 2950, 3036
BveI ACCTGC 3 cut(s) 2551, 2578, 2669
Cac8I GCNNGC 5 cut(s) 427, 490, 734, 1817, 2505
CfoI GCGC 5 cut(s) 326, 981, 1252, 1329, 2022
Cfr10I RCCGGY 1 cut(s) 732
ClaI ATCGAT 1 cut(s) 1736
CseI GACGC 2 cut(s) 158, 308
Csp6I GTAC 4 cut(s) 617, 2012, 2057, 3000
CviAII CATG 8 cut(s) 509, 1845, 2116, 2146, 2702, 2714, 3104, 3555
CviQI GTAC 4 cut(s) 617, 2012, 2057, 3000
DinI GGCGCC 1 cut(s) 325
DpnI GATC 7 cut(s) 18, 84, 694, 801, 1149, 2933, 3144
DpnII GATC 7 cut(s) 16, 82, 692, 799, 1147, 2931, 3142
DraI TTTAAA 1 cut(s) 2841
Eam1104I CTCTTC 8 cut(s) 813, 1161, 1497, 1617, 1674, 2092, 2263, 2556
EarI CTCTTC 8 cut(s) 813, 1161, 1497, 1617, 1674, 2092, 2263, 2556
EciI GGCGGA 2 cut(s) 980, 1328
Ecl136II GAGCTC 5 cut(s) 916, 949, 1264, 1297, 1873
Eco130I CCWWGG 6 cut(s) 844, 1192, 2460, 2527, 3383, 3554
Eco147I AGGCCT 2 cut(s) 500, 3388
Eco24I GRGCYC 7 cut(s) 247, 427, 918, 951, 1266, 1299, 1875
Eco47I GGWCC 7 cut(s) 886, 922, 954, 1234, 1270, 1302, 3127
Eco53kI GAGCTC 5 cut(s) 916, 949, 1264, 1297, 1873
Eco57I CTGAAG 2 cut(s) 483, 2943
Eco81I CCTNAGG 2 cut(s) 740, 2325
Eco88I CYCGRG 3 cut(s) 679, 917, 1265
Eco91I GGTNACC 1 cut(s) 764
EcoICRI GAGCTC 5 cut(s) 916, 949, 1264, 1297, 1873
EcoNI CCTNNNNNAGG 2 cut(s) 670, 1964
EcoO109I RGGNCCY 1 cut(s) 2524
EcoO65I GGTNACC 1 cut(s) 764
EcoRI GAATTC 1 cut(s) 2900
EcoRII CCWGG 7 cut(s) 70, 2070, 2520, 2783, 2935, 3180, 3455
EcoT14I CCWWGG 6 cut(s) 844, 1192, 2460, 2527, 3383, 3554
EcoT38I GRGCYC 7 cut(s) 247, 427, 918, 951, 1266, 1299, 1875
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
ErhI CCWWGG 6 cut(s) 844, 1192, 2460, 2527, 3383, 3554
FaeI CATG 8 cut(s) 512, 1848, 2119, 2149, 2705, 2717, 3107, 3558
FalI AAGNNNNNCTT 2 cut(s) 2463, 2495
FaqI GGGAC 4 cut(s) 765, 1270, 1923, 2681
FatI CATG 8 cut(s) 508, 1844, 2115, 2145, 2701, 2713, 3103, 3554
FauI CCCGC 1 cut(s) 434
FblI GTMKAC 2 cut(s) 625, 935
FriOI GRGCYC 7 cut(s) 247, 427, 918, 951, 1266, 1299, 1875
GlaI GCGC 5 cut(s) 325, 980, 1251, 1328, 2021
GsuI CTGGAG 8 cut(s) 427, 776, 992, 1340, 1841, 2958, 3251, 3439
HaeII RGCGCY 1 cut(s) 327
HgaI GACGC 2 cut(s) 158, 308
HhaI GCGC 5 cut(s) 326, 981, 1252, 1329, 2022
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 8 cut(s) 512, 1848, 2119, 2149, 2705, 2717, 3107, 3558
Hin6I GCGC 5 cut(s) 324, 979, 1250, 1327, 2020
HinP1I GCGC 5 cut(s) 324, 979, 1250, 1327, 2020
HincII GTYRAC 3 cut(s) 706, 936, 1119
HindII GTYRAC 3 cut(s) 706, 936, 1119
HindIII AAGCTT 5 cut(s) 106, 256, 876, 1224, 1850
HpaI GTTAAC 1 cut(s) 1119
Hpy166II GTNNAC 9 cut(s) 449, 626, 706, 897, 936, 1119, 1245, 2085, 3127
Hpy188I TCNGA 7 cut(s) 505, 2185, 2708, 2923, 3366, 3477, 3599
Hpy8I GTNNAC 9 cut(s) 449, 626, 706, 897, 936, 1119, 1245, 2085, 3127
Hpy99I CGWCG 2 cut(s) 435, 3309
HpyCH4III ACNGT 5 cut(s) 53, 604, 2160, 2954, 3020
HpyCH4IV ACGT 3 cut(s) 702, 3051, 3304
HpySE526I ACGT 3 cut(s) 702, 3051, 3304
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 8 cut(s) 512, 1848, 2119, 2149, 2705, 2717, 3107, 3558
HspAI GCGC 5 cut(s) 324, 979, 1250, 1327, 2020
KasI GGCGCC 1 cut(s) 323
Kpn2I TCCGGA 2 cut(s) 951, 1299
KroI GCCGGC 1 cut(s) 732
KroNI GCCGGC 1 cut(s) 734
KspAI GTTAAC 1 cut(s) 1119
Kzo9I GATC 7 cut(s) 16, 82, 692, 799, 1147, 2931, 3142
LguI GCTCTTC 1 cut(s) 1497
LweI GCATC 7 cut(s) 34, 476, 2197, 2446, 2555, 2583, 2716
MaeII ACGT 3 cut(s) 702, 3051, 3304
MaeIII GTNAC 8 cut(s) 575, 598, 764, 2241, 2387, 2857, 3083, 3447
MalI GATC 7 cut(s) 18, 84, 694, 801, 1149, 2933, 3144
MbiI CCGCTC 1 cut(s) 3152
MboI GATC 7 cut(s) 16, 82, 692, 799, 1147, 2931, 3142
MfeI CAATTG 2 cut(s) 168, 318
MflI RGATCY 1 cut(s) 2931
MhlI GDGCHC 9 cut(s) 247, 427, 539, 639, 918, 951, 1266, 1299, 1875
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 8 cut(s) 854, 941, 1202, 1289, 1531, 2180, 2186, 2700
MmeI TCCRAC 8 cut(s) 109, 259, 804, 1152, 1677, 2565, 2686, 2888
MroI TCCGGA 2 cut(s) 951, 1299
MroNI GCCGGC 1 cut(s) 732
MroXI GAANNNNTTC 2 cut(s) 1808, 2140
MslI CAYNNNNRTG 1 cut(s) 3413
MspA1I CMGCKG 4 cut(s) 116, 266, 2974, 3371
MunI CAATTG 2 cut(s) 168, 318
Mva1269I GAATGC 1 cut(s) 3484
MvaI CCWGG 7 cut(s) 72, 2072, 2522, 2785, 2937, 3182, 3457
MvnI CGCG 7 cut(s) 902, 981, 995, 1250, 1329, 1343, 2022
NaeI GCCGGC 1 cut(s) 734
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 7 cut(s) 809, 940, 958, 1157, 1288, 1306, 3413
NcoI CCATGG 1 cut(s) 3554
NdeII GATC 7 cut(s) 16, 82, 692, 799, 1147, 2931, 3142
NgoMIV GCCGGC 1 cut(s) 732
NlaIII CATG 8 cut(s) 512, 1848, 2119, 2149, 2705, 2717, 3107, 3558
NmeAIII GCCGAG 1 cut(s) 2168
NmuCI GTSAC 2 cut(s) 764, 2387
NspI RCATGY 1 cut(s) 2717
NspV TTCGAA 1 cut(s) 3203
OliI CACNNNNGTG 1 cut(s) 3413
PacI TTAATTAA 1 cut(s) 3015
PaeR7I CTCGAG 2 cut(s) 917, 1265
PaqCI CACCTGC 1 cut(s) 2551
PceI AGGCCT 2 cut(s) 500, 3388
PciI ACATGT 1 cut(s) 2713
PciSI GCTCTTC 1 cut(s) 1497
PctI GAATGC 1 cut(s) 3484
PdiI GCCGGC 1 cut(s) 734
PdmI GAANNNNTTC 2 cut(s) 1808, 2140
PfeI GAWTC 7 cut(s) 64, 437, 745, 1606, 2006, 2141, 2167
PflMI CCANNNNNTGG 2 cut(s) 216, 366
PfoI TCCNGGA 1 cut(s) 1286
PleI GAGTC 8 cut(s) 854, 940, 1202, 1288, 1530, 2180, 2185, 2699
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 8 cut(s) 854, 940, 1202, 1288, 1530, 2180, 2185, 2699
Ppu21I YACGTR 1 cut(s) 3052
PscI ACATGT 1 cut(s) 2713
PshBI ATTAAT 1 cut(s) 3011
Psp124BI GAGCTC 5 cut(s) 918, 951, 1266, 1299, 1875
Psp6I CCWGG 7 cut(s) 70, 2070, 2520, 2783, 2935, 3180, 3455
PspEI GGTNACC 1 cut(s) 764
PspGI CCWGG 7 cut(s) 70, 2070, 2520, 2783, 2935, 3180, 3455
PspOMI GGGCCC 1 cut(s) 423
PspXI VCTCGAGB 2 cut(s) 917, 1265
PstI CTGCAG 1 cut(s) 3426
PsuI RGATCY 1 cut(s) 2931
PvuII CAGCTG 2 cut(s) 2974, 3371
RsaI GTAC 4 cut(s) 618, 2013, 2058, 3001
RsaNI GTAC 4 cut(s) 617, 2012, 2057, 3000
RseI CAYNNNNRTG 1 cut(s) 3413
SacI GAGCTC 5 cut(s) 918, 951, 1266, 1299, 1875
SalI GTCGAC 1 cut(s) 934
SapI GCTCTTC 1 cut(s) 1497
Sau3AI GATC 7 cut(s) 16, 82, 692, 799, 1147, 2931, 3142
SchI GAGTC 8 cut(s) 854, 941, 1202, 1289, 1531, 2180, 2186, 2700
SduI GDGCHC 9 cut(s) 247, 427, 539, 639, 918, 951, 1266, 1299, 1875
SfaNI GCATC 7 cut(s) 34, 476, 2197, 2446, 2555, 2583, 2716
SfcI CTRYAG 1 cut(s) 3422
SfoI GGCGCC 1 cut(s) 325
Sfr274I CTCGAG 2 cut(s) 917, 1265
SfuI TTCGAA 1 cut(s) 3203
SinI GGWCC 7 cut(s) 886, 922, 954, 1234, 1270, 1302, 3127
SlaI CTCGAG 2 cut(s) 917, 1265
SmiMI CAYNNNNRTG 1 cut(s) 3413
SmlI CTYRAG 3 cut(s) 917, 1265, 2416
SmoI CTYRAG 3 cut(s) 917, 1265, 2416
SseBI AGGCCT 2 cut(s) 500, 3388
SspDI GGCGCC 1 cut(s) 323
SstI GAGCTC 5 cut(s) 918, 951, 1266, 1299, 1875
StuI AGGCCT 2 cut(s) 500, 3388
StyI CCWWGG 6 cut(s) 844, 1192, 2460, 2527, 3383, 3554
TaaI ACNGT 5 cut(s) 53, 604, 2160, 2954, 3020
TaiI ACGT 3 cut(s) 705, 3054, 3307
TaqII GACCGA 2 cut(s) 874, 1222
TatI WGTACW 2 cut(s) 616, 2056
TauI GCSGC 4 cut(s) 119, 269, 1090, 1438
TfiI GAWTC 7 cut(s) 64, 437, 745, 1606, 2006, 2141, 2167
TscAI CASTG 5 cut(s) 730, 1259, 1532, 2957, 3036
TseFI GTSAC 2 cut(s) 764, 2387
Tsp45I GTSAC 2 cut(s) 764, 2387
TspDTI ATGAA 7 cut(s) 525, 1874, 1937, 2104, 2747, 3080, 3123
TspGWI ACGGA 3 cut(s) 586, 1043, 1391
TspRI CASTG 5 cut(s) 730, 1259, 1532, 2957, 3036
Van91I CCANNNNNTGG 2 cut(s) 216, 366
VpaK11BI GGWCC 7 cut(s) 886, 922, 954, 1234, 1270, 1302, 3127
VspI ATTAAT 1 cut(s) 3011
XagI CCTNNNNNAGG 2 cut(s) 670, 1964
XapI RAATTY 2 cut(s) 1939, 2900
XbaI TCTAGA 3 cut(s) 145, 295, 2896
XceI RCATGY 1 cut(s) 2717
XhoI CTCGAG 2 cut(s) 917, 1265
XmaJI CCTAGG 3 cut(s) 844, 1192, 3383
XmiI GTMKAC 2 cut(s) 625, 935
XmnI GAANNNNTTC 2 cut(s) 1808, 2140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.