Rmu_sc0005888.1_g000013

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005888.1
OG0000126
Physical Location & Seq
Reverse (-)
61423 .. 62676
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005888.1_g000013.1.cds

Sequence Viewer

Length: 1254 bp
atgaggttgagtgtaaggactaaggagaaggaactgaacaagtaccgtgaggatgctaagttgaaagtggagcaactaagtgtgattgatggggcaattgtggagcgtaacgaaatcatcgagtcaaaagatgagaaattgagttggattgagaagagtattgaagagaaatccaagttggccaactctaaggaggaggaagtgagagcgatacaacggtcgttgaatgtataccgtgagagtattaagtcaaaagagagtgacttagatgcgattcttgagtcgattgaaaggaagaagaaagaatttgatgtgaaagaagagcaaattaaaacgttgcagagattgattgagggatgtgagaaagagctcaaattgaaagaagagatattgaaggaggaaacactgaaagtgaaacaatacagtttgcgaaatagacaaatggaggagtggtcctgcaggcttgaacttaaagagagggaagttgaattgaaagagaaacgattagagtcaaaaatggaggaatttaaaaaatgggttgaagaacgaggaaaggatttgaattcactctcctcagaacttaaagttaaagattgtcaacttgaacaggcggccaaagagcttgagttgactaagaaacaatgtggtgttgttgctcaagtgaagattgggccattggaaaagactccagagaacgatgccattgtttcttcatctgcaagtgatcaatccaacatcaatattaccgacggtagaagtttgcagttgttcatgtatgagcatatgaagagaaatgattcaataagcaacaagatctcatcctttctccaacaaaagtcatcagaaccagcaaaattggttttggatgcaatgcaagggttttacacttcaaatttgactgtcgagaacaaggagtttgatttggtgcttattagaaggacatgcattcttttgttggaagaattaaagagagtctcaccccaaactaatccagaggtcagagaagaagcaatgaagttggccactgattggaaggctaagatgaaagtggggagtgagaactggttggagattttgggttttttgcggcttgttactacttatggattgacctctgcttataatgagaaggagcttcacagtcttcttgatatagttgctcagcatgaacaagcaacagaattatcgcgggcccttgctcccacagataaggcacatggtaagctctttatatctgatttatcttttgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

417

Amino Acids

48.35

Weight (kDa)

5.83

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
AccB7I CCANNNNNTGG 1 cut(s) 1029
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 1189
AciI CCGC 3 cut(s) 611, 1087, 1189
AclI AACGTT 1 cut(s) 335
AcoI YGGCCR 3 cut(s) 180, 612, 1020
AcsI RAATTY 4 cut(s) 305, 524, 562, 892
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 1029
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 370, 622, 1135, 1225
AluI AGCT 4 cut(s) 370, 622, 1135, 1225
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 979
AoxI GGCC 5 cut(s) 180, 612, 671, 1020, 1191
ApaI GGGCCC 1 cut(s) 1195
ApoI RAATTY 4 cut(s) 305, 524, 562, 892
Asp700I GAANNNNTTC 1 cut(s) 796
AspS9I GGNCC 4 cut(s) 453, 671, 1191, 1192
AsuHPI GGTGA 1 cut(s) 969
AvaII GGWCC 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 1195
BaeI ACNNNNGTAYC 2 cut(s) 203, 236
BalI TGGCCA 2 cut(s) 182, 1022
BanII GRGCYC 2 cut(s) 372, 1195
BbsI GAAGAC 1 cut(s) 1136
Bbv12I GWGCWC 1 cut(s) 372
BccI CCATC 1 cut(s) 83
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 979
BfmI CTRYAG 1 cut(s) 457
BglII AGATCT 1 cut(s) 813
BisI GCNGC 2 cut(s) 612, 1088
BlpI GCTNAGC 1 cut(s) 1161
BlsI GCNGC 2 cut(s) 613, 1089
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 4 cut(s) 453, 671, 1191, 1192
BmiI GGNNCC 1 cut(s) 1193
BmsI GCATC 4 cut(s) 43, 259, 688, 856
BpiI GAAGAC 1 cut(s) 1136
BpmI CTGGAG 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 1161
BpuEI CTTGAG 3 cut(s) 299, 642, 644
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 1029
Bse1I ACTGG 1 cut(s) 1067
Bse3DI GCAATG 2 cut(s) 876, 1017
BseGI GGATG 4 cut(s) 58, 362, 818, 871
BseLI CCNNNNNNNGG 1 cut(s) 1029
BseMI GCAATG 2 cut(s) 876, 1017
BseMII CTCAG 2 cut(s) 588, 1175
BseNI ACTGG 1 cut(s) 1067
BseRI GAGGAG 3 cut(s) 209, 461, 562
BseSI GKGCMC 1 cut(s) 1195
Bsh1236I CGCG 1 cut(s) 1189
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 5 cut(s) 182, 614, 673, 1022, 1193
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 1029
BsmAI GTCTC 1 cut(s) 979
BsmI GAATGC 1 cut(s) 945
BsnI GGCC 5 cut(s) 182, 614, 673, 1022, 1193
Bsp120I GGGCCC 1 cut(s) 1191
Bsp1286I GDGCHC 2 cut(s) 372, 1195
Bsp143I GATC 2 cut(s) 724, 813
Bsp1720I GCTNAGC 1 cut(s) 1161
BspACI CCGC 3 cut(s) 611, 1087, 1189
BspANI GGCC 5 cut(s) 182, 614, 673, 1022, 1193
BspCNI CTCAG 2 cut(s) 587, 1174
BspFNI CGCG 1 cut(s) 1189
BspLI GGNNCC 1 cut(s) 1193
BspMAI CTGCAG 1 cut(s) 461
BspQI GCTCTTC 1 cut(s) 315
BsrDI GCAATG 2 cut(s) 876, 1017
BsrI ACTGG 1 cut(s) 1067
BssMI GATC 2 cut(s) 724, 813
BssNAI GTATAC 1 cut(s) 232
Bst1107I GTATAC 1 cut(s) 232
Bst4CI ACNGT 7 cut(s) 47, 219, 236, 425, 752, 901, 1142
Bst6I CTCTTC 5 cut(s) 149, 159, 315, 378, 782
BstC8I GCNNGC 2 cut(s) 461, 1191
BstDEI CTNAG 9 cut(s) 21, 57, 77, 189, 265, 574, 633, 1038, 1161
BstF5I GGATG 4 cut(s) 58, 362, 818, 871
BstFNI CGCG 1 cut(s) 1189
BstKTI GATC 2 cut(s) 727, 816
BstMAI GTCTC 1 cut(s) 979
BstMBI GATC 2 cut(s) 724, 813
BstMCI CGRYCG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 945
BstSFI CTRYAG 1 cut(s) 457
BstSLI GKGCMC 1 cut(s) 1195
BstUI CGCG 1 cut(s) 1189
BstV2I GAAGAC 1 cut(s) 1136
BstX2I RGATCY 1 cut(s) 813
BstYI RGATCY 1 cut(s) 813
BstZ17I GTATAC 1 cut(s) 232
BsuRI GGCC 5 cut(s) 182, 614, 673, 1022, 1193
BtsCI GGATG 4 cut(s) 58, 362, 818, 871
BtsIMutI CAGTG 2 cut(s) 404, 1023
Cac8I GCNNGC 2 cut(s) 461, 1191
Cfr13I GGNCC 4 cut(s) 453, 671, 1191, 1192
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 772, 942, 1166, 1217
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 9 cut(s) 21, 57, 77, 189, 265, 574, 633, 1038, 1161
DpnI GATC 2 cut(s) 726, 815
DpnII GATC 2 cut(s) 724, 813
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 3 cut(s) 180, 612, 1020
Eam1104I CTCTTC 5 cut(s) 149, 159, 315, 378, 782
EarI CTCTTC 5 cut(s) 149, 159, 315, 378, 782
Ecl136II GAGCTC 1 cut(s) 370
Eco24I GRGCYC 2 cut(s) 372, 1195
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 1192
EcoRI GAATTC 1 cut(s) 562
EcoT22I ATGCAT 1 cut(s) 947
EcoT38I GRGCYC 2 cut(s) 372, 1195
FaeI CATG 4 cut(s) 775, 945, 1169, 1220
FatI CATG 4 cut(s) 771, 941, 1165, 1216
FauI CCCGC 1 cut(s) 1182
FauNDI CATATG 1 cut(s) 783
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 612, 1088
FokI GGATG 4 cut(s) 65, 369, 805, 878
FriOI GRGCYC 2 cut(s) 372, 1195
Fsp4HI GCNGC 2 cut(s) 612, 1088
GluI GCNGC 2 cut(s) 612, 1088
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 5 cut(s) 182, 614, 673, 1022, 1193
Hin1II CATG 4 cut(s) 775, 945, 1169, 1220
HincII GTYRAC 2 cut(s) 599, 630
HindII GTYRAC 2 cut(s) 599, 630
HinfI GANTC 7 cut(s) 122, 274, 281, 509, 685, 797, 972
HphI GGTGA 1 cut(s) 969
Hpy166II GTNNAC 3 cut(s) 232, 599, 630
Hpy188I TCNGA 4 cut(s) 577, 844, 1001, 1237
Hpy188III TCNNGA 5 cut(s) 278, 689, 904, 992, 1148
Hpy8I GTNNAC 3 cut(s) 232, 599, 630
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 5 cut(s) 22, 388, 930, 1027, 1123
HpyCH4III ACNGT 7 cut(s) 47, 219, 236, 425, 752, 901, 1142
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 7 cut(s) 340, 459, 719, 763, 869, 874, 945
HpyF3I CTNAG 9 cut(s) 21, 57, 77, 189, 265, 574, 633, 1038, 1161
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 4 cut(s) 775, 945, 1169, 1220
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 2 cut(s) 724, 813
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 4 cut(s) 70, 103, 1132, 1204
LpnPI CCDG 7 cut(s) 445, 469, 593, 702, 861, 1005, 1048
LweI GCATC 4 cut(s) 43, 259, 688, 856
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 3 cut(s) 107, 260, 1093
MalI GATC 2 cut(s) 726, 815
MboI GATC 2 cut(s) 724, 813
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 2 cut(s) 372, 1195
MlsI TGGCCA 2 cut(s) 182, 1022
MluNI TGGCCA 2 cut(s) 182, 1022
MlyI GAGTC 5 cut(s) 131, 290, 518, 679, 981
MmeI TCCRAC 5 cut(s) 125, 756, 853, 936, 1047
Mox20I TGGCCA 2 cut(s) 182, 1022
Mph1103I ATGCAT 1 cut(s) 947
MroXI GAANNNNTTC 1 cut(s) 796
MscI TGGCCA 2 cut(s) 182, 1022
MseI TTAA 7 cut(s) 246, 330, 471, 528, 582, 588, 965
Msp20I TGGCCA 2 cut(s) 182, 1022
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 945
MvnI CGCG 1 cut(s) 1189
NdeI CATATG 1 cut(s) 783
NdeII GATC 2 cut(s) 724, 813
NlaIII CATG 4 cut(s) 775, 945, 1169, 1220
NlaIV GGNNCC 1 cut(s) 1193
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 947
NspI RCATGY 1 cut(s) 945
PciSI GCTCTTC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 1 cut(s) 945
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 2 cut(s) 274, 797
PflMI CCANNNNNTGG 1 cut(s) 1029
PkrI GCNGC 2 cut(s) 613, 1089
PleI GAGTC 5 cut(s) 130, 289, 517, 679, 980
PpsI GAGTC 5 cut(s) 130, 289, 517, 679, 980
PsiI TTATAA 1 cut(s) 1122
Psp124BI GAGCTC 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 1193
PspOMI GGGCCC 1 cut(s) 1191
PspPI GGNCC 4 cut(s) 453, 671, 1191, 1192
PstI CTGCAG 1 cut(s) 461
PsuI RGATCY 1 cut(s) 813
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 7 cut(s) 246, 330, 471, 528, 582, 588, 965
SatI GCNGC 2 cut(s) 612, 1088
Sau3AI GATC 2 cut(s) 724, 813
Sau96I GGNCC 4 cut(s) 453, 671, 1191, 1192
SbfI CCTGCAGG 1 cut(s) 461
SchI GAGTC 5 cut(s) 131, 290, 518, 679, 981
SdaI CCTGCAGG 1 cut(s) 461
SduI GDGCHC 2 cut(s) 372, 1195
SetI ASST 8 cut(s) 8, 338, 372, 624, 999, 1115, 1137, 1227
SfaNI GCATC 4 cut(s) 43, 259, 688, 856
SfcI CTRYAG 1 cut(s) 457
SinI GGWCC 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 278, 623, 657
SmoI CTYRAG 3 cut(s) 278, 623, 657
Sse8387I CCTGCAGG 1 cut(s) 461
SsiI CCGC 3 cut(s) 611, 1087, 1189
SspI AATATT 1 cut(s) 742
SstI GAGCTC 1 cut(s) 372
TaaI ACNGT 7 cut(s) 47, 219, 236, 425, 752, 901, 1142
TaiI ACGT 1 cut(s) 338
TaqI TCGA 3 cut(s) 120, 284, 903
TauI GCSGC 2 cut(s) 614, 1090
TfiI GAWTC 2 cut(s) 274, 797
Tru1I TTAA 7 cut(s) 246, 330, 471, 528, 582, 588, 965
Tru9I TTAA 7 cut(s) 246, 330, 471, 528, 582, 588, 965
TscAI CASTG 2 cut(s) 411, 1030
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 6 cut(s) 702, 760, 800, 1028, 1058, 1182
TspRI CASTG 2 cut(s) 411, 1030
Van91I CCANNNNNTGG 1 cut(s) 1029
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 4 cut(s) 305, 524, 562, 892
XceI RCATGY 1 cut(s) 945
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 796
Zsp2I ATGCAT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.