Rh3CG048100

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000126
Physical Location & Seq
Forward (+)
3294834 .. 3295718
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG048100.1

Sequence Viewer

Length: 885 bp
ATGGAGAAGATAGCATCCGATTTGAAAGTATCGGAGTTGAAGCAGGGGAGTCTAGGCAACGCGTACGAGACCTTGCATTCCCAAGCGTCTTCCTTGCTCGTTCTCAGCATTCAATGGAAGGACCTCCAGGAACACTTCGATTCGACCCGGAATGCGATCCGGACTCGTTTCGAAGAGCTTCAAGAACGAGAGAAGCAGTTGGAAGCCAAGGAGTCAAACTTGAAGTCGGAGATGGAATCCAAAAGGGACGAGTTGTTTGGAGTTGAGAAGCTGATTGATGAGAAAGTTCAGGAGGCTATAGAAATAAAGAGATCGATTCAAAAGCACAGTGAGGAGATTGAACGTGAAGAGAAGAGAGTCTTGGAAGTACAGAAATTGGTTATAGACAAGAAGAGGGAGTGTAGATTGATCGAAAGACGGATTCAAGAGAGTGGGAAGAAACTGAGTTGGGTTGAGAGAAGAACTGAAGAGAAATTGAATGAGGTTGAGTGTAAGGAGAAGGAACTGAAGAAGTACCGTGAGGATGCTAAGTTGAAAGTGGAGCAACTAAGTGTGATTGATGGGGCAATTGTGGAGCGTAACGAAATCATCGAGTCAAAAGAGGAGAAATTGAGGTGGATTGAGAAGAGTATTGAAGAGAAATCGAAGCTGGCGAACTCTAAGGAGGAGGAAGTGAGAGTGATACAACGGTCGTTGAATGTATACCGTGAGAGTATTAAGTCAAAAGAGAGTGACTTAGATGCGATTCTTGAGTCGATTGAAGGGAAGAAGAAAGAATTTGATGTGAAAGAAGAGCAAATTAAAACGTTGCAGAGATTGATTGAGGGATGTGAGAAAGAGCTCAAATTGAAAGAGGAGAAATTGAAGGAGGAAACACTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

294

Amino Acids

34.87

Weight (kDa)

5.63

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 702
AccII CGCG 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 159
AclI AACGTT 1 cut(s) 806
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 2 cut(s) 486, 527
AfaI GTAC 3 cut(s) 65, 369, 515
AflIII ACRYGT 1 cut(s) 60
AjnI CCWGG 1 cut(s) 126
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AleI CACNNNNGTG 1 cut(s) 880
AluBI AGCT 4 cut(s) 178, 271, 649, 841
AluI AGCT 4 cut(s) 178, 271, 649, 841
Alw21I GWGCWC 1 cut(s) 843
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 151
Aor13HI TCCGGA 1 cut(s) 159
ApoI RAATTY 1 cut(s) 776
ArsI GACNNNNNNTTYG 4 cut(s) 209, 239, 241, 271
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 1 cut(s) 121
BaeI ACNNNNGTAYC 2 cut(s) 674, 707
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 843
BccI CCATC 2 cut(s) 226, 554
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 128, 148
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 128, 148
BmsI GCATC 3 cut(s) 23, 514, 730
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 110
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 159
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 3 cut(s) 14, 529, 833
BseMII CTCAG 2 cut(s) 118, 434
BseRI GAGGAG 4 cut(s) 347, 617, 680, 869
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 692
BshVI ATCGAT 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 843
BsiSI CCGG 2 cut(s) 148, 160
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 3 cut(s) 76, 108, 157
Bso31I GGTCTC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 843
Bsp13I TCCGGA 1 cut(s) 159
Bsp143I GATC 3 cut(s) 156, 311, 408
BspCNI CTCAG 2 cut(s) 117, 435
BspDI ATCGAT 1 cut(s) 314
BspEI TCCGGA 1 cut(s) 159
BspFNI CGCG 1 cut(s) 62
BspPI GGATC 1 cut(s) 151
BspQI GCTCTTC 2 cut(s) 168, 786
BspT104I TTCGAA 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 156, 311, 408
BssNAI GTATAC 1 cut(s) 703
BssT1I CCWWGG 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 703
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 329, 518, 690, 707
Bst6I CTCTTC 8 cut(s) 168, 342, 347, 386, 462, 620, 630, 786
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 6 cut(s) 104, 443, 528, 548, 660, 736
BstF5I GGATG 3 cut(s) 14, 529, 833
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 3 cut(s) 159, 314, 411
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 3 cut(s) 156, 311, 408
BstMCI CGRYCG 1 cut(s) 692
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 126, 146
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 703
Bsu15I ATCGAT 1 cut(s) 314
BsuTUI ATCGAT 1 cut(s) 314
BtsCI GGATG 3 cut(s) 14, 529, 833
BtsIMutI CAGTG 2 cut(s) 334, 875
Cac8I GCNNGC 1 cut(s) 651
Cfr13I GGNCC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 314
CseI GACGC 1 cut(s) 75
Csp6I GTAC 3 cut(s) 64, 368, 514
CviJI RGCY 6 cut(s) 178, 206, 271, 296, 649, 841
CviKI_1 RGCY 6 cut(s) 178, 206, 271, 296, 649, 841
CviQI GTAC 3 cut(s) 64, 368, 514
DdeI CTNAG 6 cut(s) 104, 443, 528, 548, 660, 736
DpnI GATC 3 cut(s) 158, 313, 410
DpnII GATC 3 cut(s) 156, 311, 408
Eam1104I CTCTTC 8 cut(s) 168, 342, 347, 386, 462, 620, 630, 786
EarI CTCTTC 8 cut(s) 168, 342, 347, 386, 462, 620, 630, 786
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 843
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 2 cut(s) 486, 527
EcoICRI GAGCTC 1 cut(s) 841
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 207
FaiI YATR 3 cut(s) 299, 383, 703
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 1 cut(s) 260
FblI GTMKAC 1 cut(s) 702
FokI GGATG 2 cut(s) 536, 840
FriOI GRGCYC 1 cut(s) 843
FspBI CTAG 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 110
HapII CCGG 2 cut(s) 148, 160
HgaI GACGC 1 cut(s) 75
HpaII CCGG 2 cut(s) 148, 160
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 3 cut(s) 19, 34, 229
Hpy188III TCNNGA 5 cut(s) 160, 182, 290, 425, 749
Hpy8I GTNNAC 1 cut(s) 703
HpyAV CCTTC 4 cut(s) 112, 493, 755, 859
HpyCH4III ACNGT 4 cut(s) 329, 518, 690, 707
HpyCH4IV ACGT 2 cut(s) 343, 806
HpyCH4V TGCA 2 cut(s) 76, 811
HpyF3I CTNAG 6 cut(s) 104, 443, 528, 548, 660, 736
HpySE526I ACGT 2 cut(s) 343, 806
Kpn2I TCCGGA 1 cut(s) 159
Kzo9I GATC 3 cut(s) 156, 311, 408
LguI GCTCTTC 2 cut(s) 168, 786
LmnI GCTCC 2 cut(s) 541, 574
LpnPI CCDG 7 cut(s) 29, 113, 140, 161, 173, 275, 635
LweI GCATC 3 cut(s) 23, 514, 730
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 343, 806
MaeIII GTNAC 2 cut(s) 578, 731
MalI GATC 3 cut(s) 158, 313, 410
MboI GATC 3 cut(s) 156, 311, 408
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 8 cut(s) 374, 473, 567, 608, 776, 798, 845, 860
MluI ACGCGT 1 cut(s) 60
MlyI GAGTC 6 cut(s) 58, 157, 221, 366, 602, 761
MmeI TCCRAC 2 cut(s) 180, 207
MroI TCCGGA 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 2 cut(s) 717, 801
MslI CAYNNNNRTG 1 cut(s) 880
MspI CCGG 2 cut(s) 148, 160
MspR9I CCNGG 2 cut(s) 128, 148
MunI CAATTG 1 cut(s) 567
Mva1269I GAATGC 3 cut(s) 76, 108, 157
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 62
NciI CCSGG 1 cut(s) 148
NdeII GATC 3 cut(s) 156, 311, 408
NmuCI GTSAC 1 cut(s) 731
NspV TTCGAA 1 cut(s) 171
OliI CACNNNNGTG 1 cut(s) 880
PciSI GCTCTTC 2 cut(s) 168, 786
PcsI WCGNNNNNNNCGW 2 cut(s) 588, 650
PctI GAATGC 3 cut(s) 76, 108, 157
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 5 cut(s) 140, 236, 316, 421, 745
Pfl23II CGTACG 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 126
PleI GAGTC 6 cut(s) 57, 157, 220, 365, 601, 760
PpsI GAGTC 6 cut(s) 57, 157, 220, 365, 601, 760
PpuMI RGGWCCY 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspLI CGTACG 1 cut(s) 63
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
RsaI GTAC 3 cut(s) 65, 369, 515
RsaNI GTAC 3 cut(s) 64, 368, 514
RseI CAYNNNNRTG 1 cut(s) 880
SacI GAGCTC 1 cut(s) 843
SapI GCTCTTC 2 cut(s) 168, 786
SaqAI TTAA 2 cut(s) 717, 801
Sau3AI GATC 3 cut(s) 156, 311, 408
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 6 cut(s) 58, 157, 221, 366, 602, 761
ScrFI CCNGG 2 cut(s) 128, 148
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 3 cut(s) 23, 514, 730
SfcI CTRYAG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 880
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 8 cut(s) 374, 473, 567, 608, 776, 798, 845, 860
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 2 cut(s) 126, 146
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 4 cut(s) 329, 518, 690, 707
TaiI ACGT 2 cut(s) 346, 809
TaqI TCGA 8 cut(s) 138, 143, 171, 314, 411, 591, 644, 755
TasI AATT 8 cut(s) 374, 473, 567, 608, 776, 798, 845, 860
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 5 cut(s) 140, 236, 316, 421, 745
Tru1I TTAA 2 cut(s) 717, 801
Tru9I TTAA 2 cut(s) 717, 801
TscAI CASTG 2 cut(s) 334, 882
TseFI GTSAC 1 cut(s) 731
Tsp45I GTSAC 1 cut(s) 731
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 2 cut(s) 334, 882
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 776
XmiI GTMKAC 1 cut(s) 702
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.