MD12G1230100.v1.1

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0010961
Physical Location & Seq
Reverse (-)
30507723 .. 30510567
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1230100.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGTCTCCATTTACTGCAATCGGTTATACGCCAACAAGCCCGAGCTCGCCGCCAGTAGGATCGACGCTATTGGCTACCAGGTCGGCCACCAGCTCTCCGAGCGGTACACAATGGAGCGGCCTCGGTTTACTGATCATCTGGATGCAATTAAGTTTATCTGCAAGGACTTCTGGTCCGAGCTCTTCAAGAAGCAGATTGACAACTTAAAGACGAATCATAGAGGTACTTTTGTATTGCAAGATAATCGATTTCGTTGGGTTTCACGCATGTCACTTGATCCTTCCGAGAATGGAGACTTGTCTCAAGAAAATGCTGAGGCGGCTGAAAACAAGGCAGCACAAGAACCAAACATGCATCTCCATTTCTCGTGTGGAGTCATAAAAGGGGCTCTTCATAACTTGGGGATTGCTTGTGCCGTTTCTGCTGACCCGTCCCACCTTCCTGCATGTTCATTCGTGGTTCGTATAAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

159

Amino Acids

17.92

Weight (kDa)

7.7

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 1 - 157 1.6e-38 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05000
fragaria_vesca FvH4_6g04260
malus_domestica MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1
prunus_persica Prupe.6G334800_v2.0.a1
pyrus_communis pycom04g18990 pycom12g21390
rosa_chinensis RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691
rosa_laevigata RLG00000025559
rosa_multiflora Rmu_sc0005888.1_g000018
rosa_roxburghii Rroxscaffold_6G00429950
rosa_rugosa Rorug02G0643800 Rorug05G0294600
rosa_samantha Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800
rosa_wichuraiana Rw3G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 103, 118
AciI CCGC 4 cut(s) 51, 103, 118, 320
AclWI GGATC 2 cut(s) 68, 272
AcoI YGGCCR 1 cut(s) 85
AfaI GTAC 2 cut(s) 107, 226
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 187
AhdI GACNNNNNGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 3 cut(s) 46, 94, 181
AluI AGCT 3 cut(s) 46, 94, 181
Alw21I GWGCWC 2 cut(s) 48, 183
Alw26I GTCTC 3 cut(s) 10, 288, 306
AlwI GGATC 2 cut(s) 68, 272
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 85, 119
ApeKI GCWGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 174
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 174
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BanII GRGCYC 3 cut(s) 48, 183, 391
BauI CACGAG 1 cut(s) 367
Bbv12I GWGCWC 2 cut(s) 48, 183
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 347
BceAI ACGGC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 10, 288, 306
BisI GCNGC 4 cut(s) 51, 119, 321, 336
BlsI GCNGC 4 cut(s) 52, 120, 322, 337
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 174
BmeRI GACNNNNNGTC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 2 cut(s) 133, 364
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 87, 121
BshVI ATCGAT 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 48, 183
BsiHKCI CYCGRG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 3 cut(s) 10, 288, 306
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 2 cut(s) 87, 121
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 3 cut(s) 48, 183, 391
Bsp143I GATC 3 cut(s) 60, 133, 277
BspACI CCGC 4 cut(s) 51, 103, 118, 320
BspANI GGCC 2 cut(s) 87, 121
BspCNI CTCAG 1 cut(s) 307
BspDI ATCGAT 1 cut(s) 247
BspPI GGATC 2 cut(s) 68, 272
BspQI GCTCTTC 2 cut(s) 188, 396
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 2 cut(s) 103, 118
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 3 cut(s) 60, 133, 277
BssSI CACGAG 1 cut(s) 367
Bst2BI CACGAG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 2 cut(s) 188, 396
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 3 cut(s) 63, 136, 280
BstMAI GTCTC 3 cut(s) 10, 288, 306
BstMBI GATC 3 cut(s) 60, 133, 277
BstMWI GCNNNNNNNGC 3 cut(s) 100, 320, 422
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 3 cut(s) 271, 355, 450
BstSCI CCNGG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 247
BsuRI GGCC 2 cut(s) 87, 121
BsuTUI ATCGAT 1 cut(s) 247
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 247
CseI GACGC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 106, 225
CviAII CATG 3 cut(s) 268, 352, 447
CviQI GTAC 2 cut(s) 106, 225
DdeI CTNAG 1 cut(s) 315
DpnI GATC 3 cut(s) 62, 135, 279
DpnII GATC 3 cut(s) 60, 133, 277
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 188, 396
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 2 cut(s) 188, 396
Ecl136II GAGCTC 2 cut(s) 46, 181
Eco24I GRGCYC 3 cut(s) 48, 183, 391
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 174
Eco53kI GAGCTC 2 cut(s) 46, 181
Eco88I CYCGRG 1 cut(s) 41
EcoICRI GAGCTC 2 cut(s) 46, 181
EcoRII CCWGG 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 3 cut(s) 48, 183, 391
FaeI CATG 3 cut(s) 271, 355, 450
FaiI YATR 8 cut(s) 28, 219, 269, 353, 380, 396, 448, 467
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 418
FatI CATG 3 cut(s) 267, 351, 446
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 51, 119, 321, 336
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 3 cut(s) 48, 183, 391
Fsp4HI GCNGC 4 cut(s) 51, 119, 321, 336
GluI GCNGC 4 cut(s) 51, 119, 321, 336
HaeIII GGCC 2 cut(s) 87, 121
HgaI GACGC 1 cut(s) 74
Hin1II CATG 3 cut(s) 271, 355, 450
HinfI GANTC 2 cut(s) 214, 375
Hpy166II GTNNAC 2 cut(s) 108, 129
Hpy188I TCNGA 3 cut(s) 100, 178, 286
Hpy188III TCNNGA 3 cut(s) 140, 187, 305
Hpy8I GTNNAC 2 cut(s) 108, 129
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 291, 449
HpyCH4V TGCA 6 cut(s) 18, 146, 162, 238, 355, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 320, 422
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 3 cut(s) 271, 355, 450
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 60, 133, 277
LguI GCTCTTC 2 cut(s) 188, 396
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 7 cut(s) 65, 67, 92, 104, 125, 157, 456
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 2 cut(s) 133, 364
MabI ACCWGGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 270
MalI GATC 3 cut(s) 62, 135, 279
MbiI CCGCTC 2 cut(s) 103, 118
MboI GATC 3 cut(s) 60, 133, 277
MboII GAAGA 2 cut(s) 175, 383
MhlI GDGCHC 3 cut(s) 48, 183, 391
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 384
MnlI CCTC 3 cut(s) 132, 215, 310
Mph1103I ATGCAT 1 cut(s) 357
MseI TTAA 2 cut(s) 150, 206
MslI CAYNNNNRTG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 100, 320, 422
NdeII GATC 3 cut(s) 60, 133, 277
NlaIII CATG 3 cut(s) 271, 355, 450
NmuCI GTSAC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 3 cut(s) 271, 355, 450
PciSI GCTCTTC 2 cut(s) 188, 396
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 52, 120, 322, 337
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Psp124BI GAGCTC 2 cut(s) 48, 183
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 2 cut(s) 107, 226
RsaNI GTAC 2 cut(s) 106, 225
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 2 cut(s) 48, 183
SapI GCTCTTC 2 cut(s) 188, 396
SaqAI TTAA 2 cut(s) 150, 206
SatI GCNGC 4 cut(s) 51, 119, 321, 336
Sau3AI GATC 3 cut(s) 60, 133, 277
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 3 cut(s) 48, 183, 391
SetI ASST 6 cut(s) 48, 84, 96, 183, 226, 441
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 2 cut(s) 133, 364
SinI GGWCC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 1 cut(s) 147
SsiI CCGC 4 cut(s) 51, 103, 118, 320
SstI GAGCTC 2 cut(s) 48, 183
StyD4I CCNGG 1 cut(s) 78
TaqI TCGA 2 cut(s) 63, 247
TasI AATT 1 cut(s) 147
TauI GCSGC 3 cut(s) 53, 121, 323
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 150, 206
Tru9I TTAA 2 cut(s) 150, 206
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 383, 441
VpaK11BI GGWCC 1 cut(s) 174
XceI RCATGY 3 cut(s) 271, 355, 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.