AT3G05060

Nucleolar protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
1412867 .. 1416056
3190 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05060.1

Sequence Viewer

Length: 1602 bp
ATGGTCTTAGTGCTATACGAGACAGCGGCGGGGTTTGCCCTCTTTAAAGTTAAAGATGAAGGAAAGATGGCTAACGTCGAGGATTTGTGTAAAGAGTTCGACACTCCAGACTCAGCACGAAAGATGGTTAAGCTAAAAGCTTTTGAGAAGTTTGACAATACATCTGAAGCTCTCGAAGCTGTGGCTAAATTGCTGGAGGGAGCTCCAAGCAAAGGTCTGCGCAAGTTTTTGAAAGCTAATTGTCAAGGTGAAACCTTGGCTGTGGCTGATTCAAAGCTTGGGAATGTTATCAAGGAGAAACTGAAAATTGATTGCATTCACAACAATGCTGTTATGGAGCTTCTACGTGGTGTTAGAAGTCAGTTTACTGAACTCATATCTGGGTTGGGTGATCAAGACTTGGCTCCTATGAGCTTGGGTCTGTCTCACAGTCTCGCCAGATATAAGCTAAAGTTTAGTTCTGACAAGGTGGATACCATGATTATCCAAGCTATTGGTCTGCTTGATGATCTTGACAAAGAGCTGAACACATACGCCATGAGGGTTAGAGAATGGTATGGATGGCATTTTCCCGAGCTTGCTAAGATCATATCAGACAATATCCTATATGCCAAATCTGTTAAATTGATGGGAAACCGAGTTAATGCTGCTAAGCTAGACTTCTCCGAGATCTTAGCAGATGAAATTGAGGCAGATCTTAAGGACGCAGCTGTGATATCCATGGGAACAGAAGTCAGTGACTTAGACTTGTTGCACATCCGTGAACTCTGTGACCAGGTTCTCTCTCTTTCTGAGTACAGAGCTCAGCTTTACGATTACCTAAAGAGCAGAATGAACACTATTGCTCCCAATCTGACTGCCCTGGTAGGAGAGCTTGTTGGTGCTCGTCTTATTTCCCATGGAGGTAGTTTATTGAACCTCTCCAAGCAACCTGGGAGCACGGTTCAGATACTCGGAGCCGAAAAAGCTCTCTTTAGAGCTCTTAAGACAAAACACGCCACACCCAAGTACGGTTTGATTTTTCACGCATCTCTGGTTGGTCAAGCAGCACCAAAGCACAAGGGAAAGATCTCGCGGTCTTTAGCTGCTAAAACTGTTCTTGCTATTAGGGTTGATGCTCTTGGTGATAGCCAAGATAACACTATGGGCCTTGAAAACCGAGCTAAGCTTGAAGCGCGGTTGAGAAATCTTGAAGGAAAAGATTTAGGTCGTCTGTCTGGTTCATCTAAAGGCAAACCTAAGATTGAAGTCTATAACAAGGATAAAAAGATGGGATCAGGCGGTCTTATCACTCCTGCTAAGACTTACAACACTGCTGCAGATTCTCTTCTTGGGGAAACCTCAGCTAAATCTGAGGAGCCATCAAAGAAGAAAGATAAGAAAAAGAAGAAGAAGGTAGAAGAAGAGAAACCCGAAGAGGAAGAGCCATCAGAGAAAAAGAAGAAGAAGAAAGCTGAAGCAGAAACTGAAGCCGTAGTAGAGGTTGCAAAGGAGGAGAAGAAGAAGAATAAGAAGAAGAGAAAGCATGAGGAAGAAGAAACAACGGAGACACCAGCCAAGAAGAAGGATAAGAAAGAGAAGAAAAAGAAGAGTAAGGACTGA

Protein Analysis

533

Amino Acids

59.0

Weight (kDa)

9.24

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOP5NT PF08156 3 - 67 9.6e-21 NOP5NT (NUC127) domain
Nop PF01798 167 - 395 1.6e-84 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011411)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 221
AccII CGCG 2 cut(s) 1075, 1177
AciI CCGC 5 cut(s) 26, 29, 1075, 1177, 1281
AclWI GGATC 1 cut(s) 1282
AcuI CTGAAG 3 cut(s) 186, 1476, 1488
AfaI GTAC 2 cut(s) 797, 1010
AfiI CCNNNNNNNGG 2 cut(s) 212, 1010
AflII CTTAAG 2 cut(s) 698, 983
AgsI TTSAA 7 cut(s) 232, 273, 916, 1154, 1172, 1193, 1247
AjnI CCWGG 3 cut(s) 774, 861, 931
AleI CACNNNNGTG 1 cut(s) 759
Alw21I GWGCWC 5 cut(s) 205, 805, 886, 941, 982
Alw26I GTCTC 4 cut(s) 14, 429, 437, 1541
AlwI GGATC 1 cut(s) 1282
AlwNI CAGNNNCTG 1 cut(s) 1466
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 1 cut(s) 1147
ApeKI GCWGC 5 cut(s) 647, 707, 1046, 1085, 1316
AspLEI GCGC 2 cut(s) 222, 1177
AspS9I GGNCC 1 cut(s) 1147
AsuHPI GGTGA 3 cut(s) 260, 401, 1136
AvaI CYCGRG 1 cut(s) 572
BanII GRGCYC 3 cut(s) 205, 805, 982
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
Bbv12I GWGCWC 5 cut(s) 205, 805, 886, 941, 982
BbvCI CCTCAGC 1 cut(s) 1342
BbvI GCAGC 5 cut(s) 634, 719, 1058, 1072, 1303
BccI CCATC 7 cut(s) 61, 118, 555, 622, 1264, 1369, 1435
BceAI ACGGC 1 cut(s) 1457
BciT130I CCWGG 3 cut(s) 776, 863, 933
BciVI GTATCC 1 cut(s) 466
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 4 cut(s) 14, 429, 437, 1541
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 1 cut(s) 1317
BfrI CTTAAG 2 cut(s) 698, 983
BfuI GTATCC 1 cut(s) 466
BglII AGATCT 3 cut(s) 669, 694, 1068
BisI GCNGC 6 cut(s) 27, 648, 708, 1047, 1086, 1317
BlpI GCTNAGC 3 cut(s) 651, 804, 1164
BlsI GCNGC 6 cut(s) 28, 649, 709, 1048, 1087, 1318
Bme1390I CCNGG 3 cut(s) 776, 863, 933
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 1147
BmiI GGNNCC 3 cut(s) 405, 958, 1359
BmrFI CCNGG 3 cut(s) 776, 863, 933
BmsI GCATC 2 cut(s) 1037, 1105
BpmI CTGGAG 2 cut(s) 90, 215
Bpu10I CCTNAGC 1 cut(s) 1342
Bpu1102I GCTNAGC 3 cut(s) 651, 804, 1164
BsaAI YACGTR 1 cut(s) 347
BsaJI CCNNGG 5 cut(s) 255, 720, 861, 898, 932
BsaXI ACNNNNNCTCC 4 cut(s) 829, 859, 861, 891
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 1010
BseBI CCWGG 3 cut(s) 776, 863, 933
BseDI CCNNGG 5 cut(s) 255, 720, 861, 898, 932
BseGI GGATG 2 cut(s) 566, 756
BseLI CCNNNNNNNGG 2 cut(s) 212, 1010
BseMII CTCAG 5 cut(s) 126, 783, 818, 1344, 1356
BseRI GAGGAG 2 cut(s) 1370, 1508
BseXI GCAGC 5 cut(s) 634, 719, 1058, 1072, 1303
Bsh1236I CGCG 2 cut(s) 1075, 1177
BshFI GGCC 1 cut(s) 1149
BsiHKAI GWGCWC 5 cut(s) 205, 805, 886, 941, 982
BsiHKCI CYCGRG 1 cut(s) 572
BslI CCNNNNNNNGG 2 cut(s) 212, 1010
BsmAI GTCTC 4 cut(s) 14, 429, 437, 1541
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 1 cut(s) 1149
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 5 cut(s) 205, 805, 886, 941, 982
Bsp143I GATC 7 cut(s) 391, 508, 585, 669, 694, 1068, 1274
Bsp1720I GCTNAGC 3 cut(s) 651, 804, 1164
Bsp19I CCATGG 2 cut(s) 720, 898
BspACI CCGC 5 cut(s) 26, 29, 1075, 1177, 1281
BspANI GGCC 1 cut(s) 1149
BspCNI CTCAG 5 cut(s) 125, 784, 817, 1345, 1355
BspFNI CGCG 2 cut(s) 1075, 1177
BspLI GGNNCC 3 cut(s) 405, 958, 1359
BspMAI CTGCAG 1 cut(s) 1321
BspPI GGATC 1 cut(s) 1282
BspQI GCTCTTC 1 cut(s) 1416
BspTI CTTAAG 2 cut(s) 698, 983
BssECI CCNNGG 5 cut(s) 255, 720, 861, 898, 932
BssMI GATC 7 cut(s) 391, 508, 585, 669, 694, 1068, 1274
BssT1I CCWWGG 3 cut(s) 255, 720, 898
Bst2UI CCWGG 3 cut(s) 776, 863, 933
Bst4CI ACNGT 4 cut(s) 431, 943, 1013, 1096
Bst6I CTCTTC 6 cut(s) 1332, 1398, 1410, 1416, 1511, 1583
BstAFI CTTAAG 2 cut(s) 698, 983
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 579
BstDSI CCRYGG 2 cut(s) 720, 898
BstF5I GGATG 2 cut(s) 566, 756
BstFNI CGCG 2 cut(s) 1075, 1177
BstHHI GCGC 2 cut(s) 222, 1177
BstKTI GATC 7 cut(s) 394, 511, 588, 672, 697, 1071, 1277
BstMAI GTCTC 4 cut(s) 14, 429, 437, 1541
BstMBI GATC 7 cut(s) 391, 508, 585, 669, 694, 1068, 1274
BstMWI GCNNNNNNNGC 4 cut(s) 35, 176, 965, 1174
BstNI CCWGG 3 cut(s) 776, 863, 933
BstSCI CCNGG 3 cut(s) 774, 861, 931
BstSFI CTRYAG 1 cut(s) 1317
BstUI CGCG 2 cut(s) 1075, 1177
BstV1I GCAGC 5 cut(s) 634, 719, 1058, 1072, 1303
BstX2I RGATCY 3 cut(s) 669, 694, 1068
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 3 cut(s) 669, 694, 1068
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 1 cut(s) 1149
BtgI CCRYGG 2 cut(s) 720, 898
BtsCI GGATG 2 cut(s) 566, 756
BtsI GCAGTG 1 cut(s) 1311
BtsIMutI CAGTG 2 cut(s) 742, 1311
Cac8I GCNNGC 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 1466
CfoI GCGC 2 cut(s) 222, 1177
Cfr13I GGNCC 1 cut(s) 1147
CseI GACGC 1 cut(s) 713
CsiI ACCWGGT 1 cut(s) 774
Csp6I GTAC 2 cut(s) 796, 1009
CviAII CATG 5 cut(s) 478, 538, 721, 899, 1526
CviQI GTAC 2 cut(s) 796, 1009
DpnI GATC 7 cut(s) 393, 510, 587, 671, 696, 1070, 1276
DpnII GATC 7 cut(s) 391, 508, 585, 669, 694, 1068, 1274
DraI TTTAAA 1 cut(s) 46
Eam1104I CTCTTC 6 cut(s) 1332, 1398, 1410, 1416, 1511, 1583
EarI CTCTTC 6 cut(s) 1332, 1398, 1410, 1416, 1511, 1583
Ecl136II GAGCTC 3 cut(s) 203, 803, 980
Eco130I CCWWGG 3 cut(s) 255, 720, 898
Eco24I GRGCYC 3 cut(s) 205, 805, 982
Eco32I GATATC 1 cut(s) 717
Eco53kI GAGCTC 3 cut(s) 203, 803, 980
Eco57I CTGAAG 3 cut(s) 186, 1476, 1488
Eco88I CYCGRG 1 cut(s) 572
EcoICRI GAGCTC 3 cut(s) 203, 803, 980
EcoRII CCWGG 3 cut(s) 774, 861, 931
EcoRV GATATC 1 cut(s) 717
EcoT14I CCWWGG 3 cut(s) 255, 720, 898
EcoT38I GRGCYC 3 cut(s) 205, 805, 982
ErhI CCWWGG 3 cut(s) 255, 720, 898
FaeI CATG 5 cut(s) 481, 541, 724, 902, 1529
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FatI CATG 5 cut(s) 477, 537, 720, 898, 1525
FauI CCCGC 1 cut(s) 22
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 6 cut(s) 27, 648, 708, 1047, 1086, 1317
FokI GGATG 2 cut(s) 573, 743
FriOI GRGCYC 3 cut(s) 205, 805, 982
Fsp4HI GCNGC 6 cut(s) 27, 648, 708, 1047, 1086, 1317
FspBI CTAG 1 cut(s) 656
FspI TGCGCA 1 cut(s) 221
GlaI GCGC 2 cut(s) 221, 1176
GluI GCNGC 6 cut(s) 27, 648, 708, 1047, 1086, 1317
GsuI CTGGAG 2 cut(s) 90, 215
HaeIII GGCC 1 cut(s) 1149
HgaI GACGC 1 cut(s) 713
HhaI GCGC 2 cut(s) 222, 1177
Hin1II CATG 5 cut(s) 481, 541, 724, 902, 1529
Hin6I GCGC 2 cut(s) 220, 1175
HinP1I GCGC 2 cut(s) 220, 1175
HindIII AAGCTT 3 cut(s) 138, 275, 1166
HinfI GANTC 3 cut(s) 110, 269, 1322
HphI GGTGA 3 cut(s) 260, 401, 1136
Hpy166II GTNNAC 2 cut(s) 366, 764
Hpy188III TCNNGA 6 cut(s) 107, 173, 395, 512, 572, 1190
Hpy8I GTNNAC 2 cut(s) 366, 764
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 4 cut(s) 53, 1187, 1387, 1558
HpyCH4III ACNGT 4 cut(s) 431, 943, 1013, 1096
HpyCH4IV ACGT 2 cut(s) 75, 346
HpyCH4V TGCA 4 cut(s) 315, 754, 1319, 1487
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 176, 965, 1174
HpySE526I ACGT 2 cut(s) 75, 346
Hsp92II CATG 5 cut(s) 481, 541, 724, 902, 1529
HspAI GCGC 2 cut(s) 220, 1175
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 7 cut(s) 391, 508, 585, 669, 694, 1068, 1274
LguI GCTCTTC 1 cut(s) 1416
LmnI GCTCC 8 cut(s) 200, 208, 337, 409, 850, 936, 956, 1357
Lsp1109I GCAGC 5 cut(s) 634, 719, 1058, 1072, 1303
LweI GCATC 2 cut(s) 1037, 1105
MabI ACCWGGT 1 cut(s) 774
MaeI CTAG 1 cut(s) 656
MaeII ACGT 2 cut(s) 75, 346
MaeIII GTNAC 2 cut(s) 737, 770
MalI GATC 7 cut(s) 393, 510, 587, 671, 696, 1070, 1276
MboI GATC 7 cut(s) 391, 508, 585, 669, 694, 1068, 1274
MflI RGATCY 3 cut(s) 669, 694, 1068
MhlI GDGCHC 5 cut(s) 205, 805, 886, 941, 982
MluCI AATT 5 cut(s) 188, 238, 306, 623, 684
MlyI GAGTC 1 cut(s) 104
MseI TTAA 7 cut(s) 45, 51, 129, 621, 642, 699, 984
MslI CAYNNNNRTG 2 cut(s) 324, 759
MspA1I CMGCKG 2 cut(s) 26, 710
MspCI CTTAAG 2 cut(s) 698, 983
MspR9I CCNGG 3 cut(s) 776, 863, 933
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 3 cut(s) 776, 863, 933
MvnI CGCG 2 cut(s) 1075, 1177
MwoI GCNNNNNNNGC 4 cut(s) 35, 176, 965, 1174
NcoI CCATGG 2 cut(s) 720, 898
NdeII GATC 7 cut(s) 391, 508, 585, 669, 694, 1068, 1274
NlaIII CATG 5 cut(s) 481, 541, 724, 902, 1529
NlaIV GGNNCC 3 cut(s) 405, 958, 1359
NmuCI GTSAC 2 cut(s) 737, 770
NsbI TGCGCA 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 759
PciSI GCTCTTC 1 cut(s) 1416
PctI GAATGC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 269, 1322
PkrI GCNGC 6 cut(s) 28, 649, 709, 1048, 1087, 1318
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 347
Psp124BI GAGCTC 3 cut(s) 205, 805, 982
Psp6I CCWGG 3 cut(s) 774, 861, 931
PspGI CCWGG 3 cut(s) 774, 861, 931
PspN4I GGNNCC 3 cut(s) 405, 958, 1359
PspPI GGNCC 1 cut(s) 1147
PstI CTGCAG 1 cut(s) 1321
PstNI CAGNNNCTG 1 cut(s) 1466
PsuI RGATCY 3 cut(s) 669, 694, 1068
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 2 cut(s) 797, 1010
RsaNI GTAC 2 cut(s) 796, 1009
RseI CAYNNNNRTG 2 cut(s) 324, 759
SacI GAGCTC 3 cut(s) 205, 805, 982
SapI GCTCTTC 1 cut(s) 1416
SaqAI TTAA 7 cut(s) 45, 51, 129, 621, 642, 699, 984
SatI GCNGC 6 cut(s) 27, 648, 708, 1047, 1086, 1317
Sau3AI GATC 7 cut(s) 391, 508, 585, 669, 694, 1068, 1274
Sau96I GGNCC 1 cut(s) 1147
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 3 cut(s) 776, 863, 933
SduI GDGCHC 5 cut(s) 205, 805, 886, 941, 982
SexAI ACCWGGT 1 cut(s) 774
SfaNI GCATC 2 cut(s) 1037, 1105
SfcI CTRYAG 1 cut(s) 1317
SmiMI CAYNNNNRTG 2 cut(s) 324, 759
SmlI CTYRAG 2 cut(s) 698, 983
SmoI CTYRAG 2 cut(s) 698, 983
Sse9I AATT 5 cut(s) 188, 238, 306, 623, 684
SsiI CCGC 5 cut(s) 26, 29, 1075, 1177, 1281
SspMI CTAG 1 cut(s) 656
SstI GAGCTC 3 cut(s) 205, 805, 982
StyD4I CCNGG 3 cut(s) 774, 861, 931
StyI CCWWGG 3 cut(s) 255, 720, 898
TaaI ACNGT 4 cut(s) 431, 943, 1013, 1096
TaiI ACGT 2 cut(s) 78, 349
TaqI TCGA 3 cut(s) 78, 99, 174
TasI AATT 5 cut(s) 188, 238, 306, 623, 684
TatI WGTACW 1 cut(s) 795
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 269, 1322
Tru1I TTAA 7 cut(s) 45, 51, 129, 621, 642, 699, 984
Tru9I TTAA 7 cut(s) 45, 51, 129, 621, 642, 699, 984
TscAI CASTG 2 cut(s) 742, 1318
TseFI GTSAC 2 cut(s) 737, 770
TseI GCWGC 5 cut(s) 647, 707, 1046, 1085, 1316
Tsp45I GTSAC 2 cut(s) 737, 770
TspDTI ATGAA 4 cut(s) 72, 696, 848, 1212
TspGWI ACGGA 2 cut(s) 749, 1559
TspRI CASTG 2 cut(s) 742, 1318
Vha464I CTTAAG 2 cut(s) 698, 983
XspI CTAG 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.