FvH4_6g04090

Nucleolar protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
2221237 .. 2224826
3590 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04090.t1

Sequence Viewer

Length: 1647 bp
ATGCTTCTGTTGTTTGAAAACCCTGGAGGGTTTATGCTCTTCAAAGTGTTGAAGGATGACGGCAAGTTCACCAAGGCTGAGGCTCATGACATAGCGAAGGAGTTTGAAACTGGAGAGTCAGCAAGAAAGGTTGTCAAACTGAAAGCTTTCTCCAAGTTTGAGAATATGTCAGAGGCTCTCGAGGCAGCAACGATGTTGATCGACAGTAAACCCACCAAGGATCTGCGCAAGTTCTTGAAAAAGCACTGTGAGGGTGAAATTCTGGGTGTTGCAGATTCAAAGCTAGGAAATATCATCAAGGAGAAACTGAAAATTGAATGTGTTCATGACAATGCTGTGATGGAGTTGATGAGAGGTATTAGAAGTCAGTTGAATGATGTTGTAACGGGTTTACAACTTCAAGACATGGCACCAATGAGCTTGGGTTTATCTCATAGTTTATCTAGATACAAGCTCAAGTTCAGTGCCGATAAGGTTGATACTATGGTTATTCAAGCCATTGGTTTGCTTGATGATCTTGATAAAGAGTTAAATACATATGCTATGAGAGTTCGAGAATGGTATGGTTGGCATTTTCCAGAACTTGCTAAGATCATACAGGACAATATTGCTTACGCCAAGGCAGTAAAGCTGATGGGCTTTCGTGTTAATGCTGCAAAGCTTGATTTCTCAGAGATATTATCGGACGAGGTTGAGACTGAATTGAAGGAAGCAGCTGTTATATCTATGGGAACCGAAATTAGTGACCTTGATTTGATTAACATCAAGGAACTCTGCGAACAAGTCCTTTCTCTAGCTGAGTATAGAGCCCAGCTATTTGATTATCTAAAAACAAGGATGAACACTATTGCACCAAATTTGACTGCTTTGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGTGGTAGCTTGGTGAACCTTGCAAAGCAGCCTGGGAGCACAATTCAGATTCTTGGAGCTGAAAAGGCTCTCTTTAGGGCTCTCAAGACTAAGCATGCAACTCCAAAATATGGGCTTATCTACCATGCATCCTTGGTTGGTCAGGCAGCTCCAAAGCTCAAGGGTAAAATTTCTAGGACGCTTGCTAGCAAAGCTGTACTTTCAATAAGAATTGATGCTCTTAGAGAGGGAGATAGCCTAGATAACTCGGTGGGAGTAGAAAGTCGAGGCAAAGTGGAAGCACGGATAAGGAGTCTTGAAGGGAAAGCATTGAGTCAGTCTGCTGGATCGACTAAAGGAAAGCCATTGATAGAAGCCTATGACAAGGATCGCAAGAAGGGTGCTGGAGGATTGATAACTGCTGCCAAGGCATATAATCCTGCAGCAGATTCAGTTCTAGGGCAAACCACTCCTGCTGGAAAGACTGATGAAACAACGAACGAGAAGAAGAAAAGGAAGAAGGTTGATGACGAGGACATGCCCGACACAAATGACAATGTGGAGCCAGAAGATGAAGAGCCAGTGAAGAAGGAAAAGAAGGAAAAGAAGAAAAAGAAGAAACAATCAGCTGAGGATGTTGAGGTACAGAATGGTGAGGTTGAGAAGAAGAAAAGGAAAAGAAAACATGCCGAAGAAGAGGAAGAATCTGAAGCTCCAAGCAAGAAGAAAGAGAAGAAGAAAAAGAAGAAGAATGACGATTGA

Protein Analysis

549

Amino Acids

60.78

Weight (kDa)

8.98

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOP5NT PF08156 2 - 68 2.4e-15 NOP5NT (NUC127) domain
Nop PF01798 169 - 399 5.6e-84 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011411)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 1016
AclWI GGATC 3 cut(s) 228, 1240, 1281
AcsI RAATTY 3 cut(s) 258, 856, 1074
AcuI CTGAAG 1 cut(s) 1614
AfaI GTAC 2 cut(s) 1104, 1530
AfiI CCNNNNNNNGG 1 cut(s) 1016
AjnI CCWGG 2 cut(s) 22, 937
Alw21I GWGCWC 2 cut(s) 892, 947
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 3 cut(s) 228, 1240, 1281
Ama87I CYCGRG 1 cut(s) 179
ApeKI GCWGC 7 cut(s) 185, 653, 713, 934, 1052, 1307, 1328
ApoI RAATTY 3 cut(s) 258, 856, 1074
Asp700I GAANNNNTTC 2 cut(s) 146, 321
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 4 cut(s) 61, 266, 931, 1550
AsuNHI GCTAGC 1 cut(s) 1091
AvaI CYCGRG 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 2 cut(s) 811, 988
Bbv12I GWGCWC 2 cut(s) 892, 947
BbvCI CCTCAGC 2 cut(s) 78, 1515
BbvI GCAGC 7 cut(s) 197, 640, 725, 946, 1064, 1294, 1340
BccI CCATC 2 cut(s) 334, 628
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 2 cut(s) 24, 939
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 7 cut(s) 284, 444, 794, 1080, 1092, 1145, 1343
BfmI CTRYAG 1 cut(s) 1326
BisI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
BlsI GCNGC 7 cut(s) 187, 655, 715, 936, 1054, 1309, 1330
Bme1390I CCNGG 2 cut(s) 24, 939
BmeT110I CYCGRG 1 cut(s) 179
BmiI GGNNCC 3 cut(s) 411, 733, 1449
BmrFI CCNGG 2 cut(s) 24, 939
BmsI GCATC 2 cut(s) 1043, 1111
BmtI GCTAGC 1 cut(s) 1095
BpmI CTGGAG 3 cut(s) 45, 132, 1311
Bpu10I CCTNAGC 2 cut(s) 78, 1515
BpuEI CTTGAG 3 cut(s) 440, 974, 1049
BsaBI GATNNNNATC 2 cut(s) 197, 761
BsaJI CCNNGG 8 cut(s) 22, 72, 216, 618, 904, 938, 1038, 1311
Bsc4I CCNNNNNNNGG 1 cut(s) 1016
Bse1I ACTGG 2 cut(s) 115, 1466
Bse3DI GCAATG 1 cut(s) 897
Bse8I GATNNNNATC 2 cut(s) 197, 761
BseBI CCWGG 2 cut(s) 24, 939
BseDI CCNNGG 8 cut(s) 22, 72, 216, 618, 904, 938, 1038, 1311
BseGI GGATG 4 cut(s) 61, 843, 1034, 1525
BseJI GATNNNNATC 2 cut(s) 197, 761
BseLI CCNNNNNNNGG 1 cut(s) 1016
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 4 cut(s) 69, 684, 789, 1506
BseNI ACTGG 2 cut(s) 115, 1466
BseXI GCAGC 7 cut(s) 197, 640, 725, 946, 1064, 1294, 1340
BseYI CCCAGC 1 cut(s) 810
BshNI GGYRCC 1 cut(s) 409
BsiHKAI GWGCWC 2 cut(s) 892, 947
BsiHKCI CYCGRG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 1016
BsmAI GTCTC 1 cut(s) 689
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 4 cut(s) 811, 892, 947, 988
Bsp143I GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
Bsp19I CCATGG 1 cut(s) 904
BspCNI CTCAG 4 cut(s) 70, 683, 790, 1507
BspHI TCATGA 2 cut(s) 85, 325
BspLI GGNNCC 3 cut(s) 411, 733, 1449
BspMAI CTGCAG 1 cut(s) 1330
BspOI GCTAGC 1 cut(s) 1095
BspPI GGATC 3 cut(s) 228, 1240, 1281
BspQI GCTCTTC 2 cut(s) 44, 1455
BspT107I GGYRCC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 897
BsrI ACTGG 2 cut(s) 115, 1466
BssECI CCNNGG 8 cut(s) 22, 72, 216, 618, 904, 938, 1038, 1311
BssMI GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
BssT1I CCWWGG 6 cut(s) 72, 216, 618, 904, 1038, 1311
Bst2UI CCWGG 2 cut(s) 24, 939
Bst4CI ACNGT 2 cut(s) 206, 248
Bst6I CTCTTC 3 cut(s) 44, 1455, 1575
BstC8I GCNNGC 4 cut(s) 892, 1002, 1089, 1093
BstDEI CTNAG 7 cut(s) 78, 588, 670, 798, 996, 1127, 1515
BstDSI CCRYGG 1 cut(s) 904
BstF5I GGATG 4 cut(s) 61, 843, 1034, 1525
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 6 cut(s) 201, 223, 517, 594, 1235, 1276
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
BstMWI GCNNNNNNNGC 4 cut(s) 182, 971, 1097, 1313
BstNI CCWGG 2 cut(s) 24, 939
BstNSI RCATGY 3 cut(s) 1004, 1426, 1574
BstSCI CCNGG 2 cut(s) 22, 937
BstSFI CTRYAG 1 cut(s) 1326
BstV1I GCAGC 7 cut(s) 197, 640, 725, 946, 1064, 1294, 1340
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 904
BtsCI GGATG 4 cut(s) 61, 843, 1034, 1525
BtsIMutI CAGTG 3 cut(s) 244, 469, 1473
Cac8I GCNNGC 4 cut(s) 892, 1002, 1089, 1093
CciI TCATGA 2 cut(s) 85, 325
CfoI GCGC 1 cut(s) 228
CseI GACGC 1 cut(s) 1093
Csp6I GTAC 2 cut(s) 1103, 1529
CviAII CATG 8 cut(s) 86, 326, 406, 905, 1001, 1031, 1423, 1571
CviQI GTAC 2 cut(s) 1103, 1529
DdeI CTNAG 7 cut(s) 78, 588, 670, 798, 996, 1127, 1515
DpnI GATC 6 cut(s) 200, 222, 516, 593, 1234, 1275
DpnII GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
Eam1104I CTCTTC 3 cut(s) 44, 1455, 1575
EarI CTCTTC 3 cut(s) 44, 1455, 1575
Eco130I CCWWGG 6 cut(s) 72, 216, 618, 904, 1038, 1311
Eco24I GRGCYC 2 cut(s) 811, 988
Eco57I CTGAAG 1 cut(s) 1614
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 22, 937
EcoT14I CCWWGG 6 cut(s) 72, 216, 618, 904, 1038, 1311
EcoT22I ATGCAT 1 cut(s) 1036
EcoT38I GRGCYC 2 cut(s) 811, 988
ErhI CCWWGG 6 cut(s) 72, 216, 618, 904, 1038, 1311
FaeI CATG 8 cut(s) 89, 329, 409, 908, 1004, 1034, 1426, 1574
FalI AAGNNNNNCTT 4 cut(s) 962, 994, 1089, 1121
FatI CATG 8 cut(s) 85, 325, 405, 904, 1000, 1030, 1422, 1570
FauNDI CATATG 1 cut(s) 538
Fnu4HI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
FokI GGATG 4 cut(s) 68, 850, 1021, 1532
FriOI GRGCYC 2 cut(s) 811, 988
Fsp4HI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
FspBI CTAG 7 cut(s) 284, 444, 794, 1080, 1092, 1145, 1343
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 1 cut(s) 227
GluI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
GsaI CCCAGC 1 cut(s) 814
GsuI CTGGAG 3 cut(s) 45, 132, 1311
HgaI GACGC 1 cut(s) 1093
HhaI GCGC 1 cut(s) 228
Hin1II CATG 8 cut(s) 89, 329, 409, 908, 1004, 1034, 1426, 1574
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HindIII AAGCTT 2 cut(s) 144, 659
HinfI GANTC 7 cut(s) 116, 275, 955, 1198, 1219, 1334, 1589
HphI GGTGA 4 cut(s) 61, 266, 931, 1550
Hpy166II GTNNAC 4 cut(s) 69, 209, 392, 922
Hpy188I TCNGA 5 cut(s) 172, 673, 685, 954, 1594
Hpy8I GTNNAC 4 cut(s) 69, 209, 392, 922
HpyAV CCTTC 8 cut(s) 46, 91, 700, 1199, 1276, 1399, 1468, 1477
HpyCH4III ACNGT 2 cut(s) 206, 248
HpyCH4V TGCA 7 cut(s) 272, 656, 851, 929, 1004, 1034, 1328
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 971, 1097, 1313
HpyF3I CTNAG 7 cut(s) 78, 588, 670, 798, 996, 1127, 1515
Hsp92II CATG 8 cut(s) 89, 329, 409, 908, 1004, 1034, 1426, 1574
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
LguI GCTCTTC 2 cut(s) 44, 1455
LmnI GCTCC 6 cut(s) 877, 942, 962, 1060, 1447, 1603
Lsp1109I GCAGC 7 cut(s) 197, 640, 725, 946, 1064, 1294, 1340
LweI GCATC 2 cut(s) 1043, 1111
MaeI CTAG 7 cut(s) 284, 444, 794, 1080, 1092, 1145, 1343
MaeIII GTNAC 2 cut(s) 382, 743
MalI GATC 6 cut(s) 200, 222, 516, 593, 1234, 1275
MboI GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 4 cut(s) 811, 892, 947, 988
MluCI AATT 8 cut(s) 258, 312, 701, 738, 856, 948, 1074, 1116
MlyI GAGTC 3 cut(s) 125, 1207, 1228
Mph1103I ATGCAT 1 cut(s) 1036
MroXI GAANNNNTTC 2 cut(s) 146, 321
MseI TTAA 3 cut(s) 530, 648, 759
MslI CAYNNNNRTG 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 716, 1514
MspR9I CCNGG 2 cut(s) 24, 939
MvaI CCWGG 2 cut(s) 24, 939
MwoI GCNNNNNNNGC 4 cut(s) 182, 971, 1097, 1313
NcoI CCATGG 1 cut(s) 904
NdeI CATATG 1 cut(s) 538
NdeII GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
NheI GCTAGC 1 cut(s) 1091
NlaIII CATG 8 cut(s) 89, 329, 409, 908, 1004, 1034, 1426, 1574
NlaIV GGNNCC 3 cut(s) 411, 733, 1449
NmuCI GTSAC 1 cut(s) 743
NsbI TGCGCA 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 1036
NspI RCATGY 3 cut(s) 1004, 1426, 1574
PaeI GCATGC 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 179
PagI TCATGA 2 cut(s) 85, 325
PciSI GCTCTTC 2 cut(s) 44, 1455
PdmI GAANNNNTTC 2 cut(s) 146, 321
PfeI GAWTC 4 cut(s) 275, 955, 1334, 1589
PflMI CCANNNNNTGG 1 cut(s) 1016
PkrI GCNGC 7 cut(s) 187, 655, 715, 936, 1054, 1309, 1330
PleI GAGTC 3 cut(s) 124, 1206, 1227
PpsI GAGTC 3 cut(s) 124, 1206, 1227
Psp6I CCWGG 2 cut(s) 22, 937
PspFI CCCAGC 1 cut(s) 810
PspGI CCWGG 2 cut(s) 22, 937
PspN4I GGNNCC 3 cut(s) 411, 733, 1449
PstI CTGCAG 1 cut(s) 1330
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 2 cut(s) 716, 1514
RsaI GTAC 2 cut(s) 1104, 1530
RsaNI GTAC 2 cut(s) 1103, 1529
RseI CAYNNNNRTG 1 cut(s) 330
SapI GCTCTTC 2 cut(s) 44, 1455
SaqAI TTAA 3 cut(s) 530, 648, 759
SatI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
Sau3AI GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
SchI GAGTC 3 cut(s) 125, 1207, 1228
ScrFI CCNGG 2 cut(s) 24, 939
SduI GDGCHC 4 cut(s) 811, 892, 947, 988
SfaNI GCATC 2 cut(s) 1043, 1111
SfcI CTRYAG 1 cut(s) 1326
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 4 cut(s) 179, 455, 989, 1064
SmoI CTYRAG 4 cut(s) 179, 455, 989, 1064
SphI GCATGC 1 cut(s) 1004
Sse9I AATT 8 cut(s) 258, 312, 701, 738, 856, 948, 1074, 1116
SspI AATATT 1 cut(s) 607
SspMI CTAG 7 cut(s) 284, 444, 794, 1080, 1092, 1145, 1343
StyD4I CCNGG 2 cut(s) 22, 937
StyI CCWWGG 6 cut(s) 72, 216, 618, 904, 1038, 1311
TaaI ACNGT 2 cut(s) 206, 248
TaqI TCGA 5 cut(s) 180, 201, 553, 1171, 1235
TasI AATT 8 cut(s) 258, 312, 701, 738, 856, 948, 1074, 1116
TatI WGTACW 1 cut(s) 1102
TfiI GAWTC 4 cut(s) 275, 955, 1334, 1589
Tru1I TTAA 3 cut(s) 530, 648, 759
Tru9I TTAA 3 cut(s) 530, 648, 759
TscAI CASTG 3 cut(s) 251, 469, 1473
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 7 cut(s) 185, 653, 713, 934, 1052, 1307, 1328
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 4 cut(s) 314, 854, 1389, 1473
TspGWI ACGGA 1 cut(s) 1204
TspRI CASTG 3 cut(s) 251, 469, 1473
Van91I CCANNNNNTGG 1 cut(s) 1016
XapI RAATTY 3 cut(s) 258, 856, 1074
XbaI TCTAGA 1 cut(s) 443
XceI RCATGY 3 cut(s) 1004, 1426, 1574
XhoI CTCGAG 1 cut(s) 179
XmnI GAANNNNTTC 2 cut(s) 146, 321
XspI CTAG 7 cut(s) 284, 444, 794, 1080, 1092, 1145, 1343
Zsp2I ATGCAT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.