Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011411

Physical Location & Seq

Genomic Coordinates Forward (+)

75407971 .. 75409301

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0642100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTCACAGTTGTGCTTCCATTGAACTTGTTTCAATTCTAATACTGTCAGGAGTTTTATTCTTTGAAATAATCCAACTTGGTTTCTGCAGCAAGGCTGATGTTAACACGCGCTGTATGGAGATCGAGAGGAATGCTCTACTTAAGCTCAAAGAAAGCCTCACAGATCCCTCGGACCAGCTTTCATCTTGGGTGGCAGATGAGTCAGATTGCTGCAAATGGAGAGGTGTAGGCTGCAACAACATAACTGGGCATGTGGTCAGCCTCAATCTCTGTAACCCATATGACAGTTTTCGCTACTCATATGGAAATGATTTGGTTTACTTGGACTTGAGCATGAATGACTACGGAGGTCTCCAACTTCCAAGTTTCATCGGATCACTAGAGAAACTGAAATACCTCAATCTCTCTTGGTCATCTTTTGGCGGAGTCTTTCCACCCAATCTTGGAAACCTCTCAAGATTGGTCTACTTAGATCTCAAGGGTAATAACTTCGTTGAGAATGACCTCAGATGGCTTCCTAGTCTTTCTTCCTTAAAGTACCTTAACTTGGGTCTCGCGAACCTCACCATGGCTGCACCATATTGGCTTCCTATTGTTAATATGCTCCCTTCACTTACTGAACTGCATTTGCCTAGTTGCTACCTTTCTGTCCTTCTTGCCACGCTTCCTTATATCAATTTCACATCCCTTTCGGTTCTTAATCTTCCTGGCAATGTTTTTTTTAACTCCACACTACCTCCCTGGTTGTTCAATCTGACCAAACTAATCTTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

259

Amino Acids

28.88

Weight (kDa)

5.14

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	43 - 80	9.2e-14	Leucine rich repeat N-terminal domain
LRR_14	PF23598	86 - 187	3.3e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05060 AT5G27120
fragaria_vesca	FvH4_6g04090 FvH4_6g04090
malus_domestica	MD04G1216600.v1.1 MD12G1233200.v1.1
prunus_persica	Prupe.6G336300_v2.0.a1
pyrus_communis	pycom04g19260 pycom12g21570
rosa_chinensis	RchiOBHm_Chr3g0452641
rosa_laevigata	RLG00000025576
rosa_multiflora	Rmu_sc0022184.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429680
rosa_rugosa	Rorug02G0642100 Rorug02G0642100
rosa_samantha	Rh3AG044500 Rh3BG046800 Rh3CG045300 Rh3DG045700
rosa_wichuraiana	Rw3G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	2 cut(s)	112, 560
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	2 cut(s)	161, 385
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	446, 550, 571
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	26, 36, 68, 754
AjnI	CCWGG	2 cut(s)	709, 743
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	2 cut(s)	148, 181
AluI	AGCT	2 cut(s)	148, 181
Alw26I	GTCTC	2 cut(s)	359, 560
AlwI	GGATC	2 cut(s)	161, 385
ApeKI	GCWGC	4 cut(s)	90, 213, 234, 575
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	102, 200, 221, 562
BccI	CCATC	1 cut(s)	507
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	2 cut(s)	711, 745
BcoDI	GTCTC	2 cut(s)	359, 560
BfaI	CTAG	3 cut(s)	383, 522, 636
BfmI	CTRYAG	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	143
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	4 cut(s)	91, 214, 235, 576
BlsI	GCNGC	4 cut(s)	92, 215, 236, 577
Bme1390I	CCNGG	2 cut(s)	711, 745
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	711, 745
BmrI	ACTGGG	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpuEI	CTTGAG	3 cut(s)	352, 442, 464
BsaI	GGTCTC	2 cut(s)	359, 560
BsaJI	CCNNGG	3 cut(s)	171, 570, 743
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 550, 571
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	721
BseBI	CCWGG	2 cut(s)	711, 745
BseDI	CCNNGG	3 cut(s)	171, 570, 743
BseGI	GGATG	1 cut(s)	686
BseLI	CCNNNNNNNGG	3 cut(s)	446, 550, 571
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	1 cut(s)	523
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	4 cut(s)	102, 200, 221, 562
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	2 cut(s)	112, 560
BslI	CCNNNNNNNGG	3 cut(s)	446, 550, 571
BsmAI	GTCTC	2 cut(s)	359, 560
BsmI	GAATGC	1 cut(s)	139
Bso31I	GGTCTC	2 cut(s)	359, 560
Bsp143I	GATC	4 cut(s)	123, 166, 377, 475
Bsp19I	CCATGG	1 cut(s)	570
Bsp68I	TCGCGA	1 cut(s)	560
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	522
BspFNI	CGCG	2 cut(s)	112, 560
BspMAI	CTGCAG	1 cut(s)	92
BspPI	GGATC	2 cut(s)	161, 385
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	2 cut(s)	359, 560
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	3 cut(s)	171, 570, 743
BssMI	GATC	4 cut(s)	123, 166, 377, 475
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	2 cut(s)	711, 745
Bst4CI	ACNGT	3 cut(s)	11, 48, 290
BstAFI	CTTAAG	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	472, 509
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	686
BstFNI	CGCG	2 cut(s)	112, 560
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	4 cut(s)	126, 169, 380, 478
BstMAI	GTCTC	2 cut(s)	359, 560
BstMBI	GATC	4 cut(s)	123, 166, 377, 475
BstNI	CCWGG	2 cut(s)	711, 745
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	709, 743
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	2 cut(s)	112, 560
BstV1I	GCAGC	4 cut(s)	102, 200, 221, 562
BstX2I	RGATCY	2 cut(s)	166, 475
BstYI	RGATCY	2 cut(s)	166, 475
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	686
BtuMI	TCGCGA	1 cut(s)	560
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	3 cut(s)	254, 337, 571
CviJI	RGCY	9 cut(s)	98, 148, 159, 181, 234, 264, 517, 575, 589
CviKI_1	RGCY	9 cut(s)	98, 148, 159, 181, 234, 264, 517, 575, 589
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	2 cut(s)	472, 509
DpnI	GATC	4 cut(s)	125, 168, 379, 477
DpnII	GATC	4 cut(s)	123, 166, 377, 475
EciI	GGCGGA	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	2 cut(s)	359, 560
Eco47I	GGWCC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	709, 743
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	3 cut(s)	257, 340, 574
FatI	CATG	3 cut(s)	253, 336, 570
FauNDI	CATATG	2 cut(s)	283, 304
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	4 cut(s)	91, 214, 235, 576
FokI	GGATG	1 cut(s)	673
Fsp4HI	GCNGC	4 cut(s)	91, 214, 235, 576
FspBI	CTAG	3 cut(s)	383, 522, 636
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	91, 214, 235, 576
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	257, 340, 574
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	203, 429
HpaI	GTTAAC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	3 cut(s)	106, 322, 469
Hpy188I	TCNGA	5 cut(s)	175, 208, 377, 512, 759
Hpy188III	TCNNGA	5 cut(s)	51, 127, 459, 559, 772
Hpy8I	GTNNAC	3 cut(s)	106, 322, 469
HpyAV	CCTTC	2 cut(s)	621, 665
HpyCH4III	ACNGT	3 cut(s)	11, 48, 290
HpyCH4V	TGCA	5 cut(s)	90, 216, 237, 578, 628
HpyF3I	CTNAG	2 cut(s)	472, 509
Hsp92II	CATG	3 cut(s)	257, 340, 574
HspAI	GCGC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	123, 166, 377, 475
LmnI	GCTCC	1 cut(s)	612
LpnPI	CCDG	7 cut(s)	36, 191, 234, 696, 723, 730, 757
Lsp1109I	GCAGC	4 cut(s)	102, 200, 221, 562
MaeI	CTAG	3 cut(s)	383, 522, 636
MaeIII	GTNAC	2 cut(s)	5, 275
MalI	GATC	4 cut(s)	125, 168, 379, 477
MboI	GATC	4 cut(s)	123, 166, 377, 475
MboII	GAAGA	2 cut(s)	522, 698
MflI	RGATCY	2 cut(s)	166, 475
MluCI	AATT	2 cut(s)	36, 679
MlyI	GAGTC	2 cut(s)	212, 438
MmeI	TCCRAC	2 cut(s)	100, 382
MseI	TTAA	7 cut(s)	105, 144, 536, 546, 600, 702, 726
MslI	CAYNNNNRTG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	711, 745
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	2 cut(s)	711, 745
MvnI	CGCG	2 cut(s)	112, 560
NcoI	CCATGG	1 cut(s)	570
NdeI	CATATG	2 cut(s)	283, 304
NdeII	GATC	4 cut(s)	123, 166, 377, 475
NlaIII	CATG	3 cut(s)	257, 340, 574
NmuCI	GTSAC	1 cut(s)	5
NruI	TCGCGA	1 cut(s)	560
NspI	RCATGY	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	12
PctI	GAATGC	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	92, 215, 236, 577
PleI	GAGTC	2 cut(s)	211, 437
PpsI	GAGTC	2 cut(s)	211, 437
Psp6I	CCWGG	2 cut(s)	709, 743
PspGI	CCWGG	2 cut(s)	709, 743
PspPI	GGNCC	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	166, 475
RruI	TCGCGA	1 cut(s)	560
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	7 cut(s)	105, 144, 536, 546, 600, 702, 726
SatI	GCNGC	4 cut(s)	91, 214, 235, 576
Sau3AI	GATC	4 cut(s)	123, 166, 377, 475
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	212, 438
ScrFI	CCNGG	2 cut(s)	711, 745
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	4 cut(s)	143, 331, 457, 479
SmoI	CTYRAG	4 cut(s)	143, 331, 457, 479
Sse9I	AATT	2 cut(s)	36, 679
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	3 cut(s)	383, 522, 636
StyD4I	CCNGG	2 cut(s)	709, 743
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	11, 48, 290
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	36, 679
Tru1I	TTAA	7 cut(s)	105, 144, 536, 546, 600, 702, 726
Tru9I	TTAA	7 cut(s)	105, 144, 536, 546, 600, 702, 726
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	4 cut(s)	90, 213, 234, 575
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	174, 353, 361
TspGWI	ACGGA	1 cut(s)	363
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	3 cut(s)	383, 522, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.