Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022184.1

Orthogroup ID

OG0011411

Physical Location & Seq

Genomic Coordinates Reverse (-)

204 .. 3382

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

atgcttctgttgtttgaaaaccctggagggtttatgctcttcaaagttttgaaagatgatggcaagttcacaaaagctgaggcgcaggacatagcgaaggaatttgcaactggagagtcagcaagaaaggttgtaaaactgaaagctttctccaagtttgagaatatgtcagaagctttggaggcagcaacgatgttgattgagagtaaaaccacaaaagatctgcgcaagttcttgaaaaagcactgcgagggtgaaattctgggtgttgcagattcaaagctaggaaatatcattaaggagaaactgaaaatcgaatgtgttcatgacaatgctgttatggagttgatgagaggtgttagaagtcagttgactgaactcataacgggtttacaagttcaagatatggcaccaatgagcctgggtttatctcatagtttatctcgatacaagctcaagttcagtgccgataaggttgatacaatggttatccaagccattggtttgcttgatgatcttgataaagagctaaatacatatgcaatgagagttcgagaatggtacggttggcatttcccagaactcgctaagatcgtacaggacaatattgcttatgccaaggtagtaaagctgatgggctttcgtgttgatgctgccaagcttgatttctcagagatattatcagacgaggttgagactgaattgaaggaagcagctgttatatctatgggaactgaaatcagtgaccttgatttgattaacatcaaagaactctgtgaacaagtcctttctctagccgagtacagagcccagctatttgattatctaaaaacaaggatgaacaccattgcaccaaatttgactgctttggttggggagcttgttggtgctcgcctcattgctcatggtggtagcttggtgaaccttgcaaagcagcctgggagcacaattcagattcttggagctgaaaaggctctctttagggcactcaagactaagcatgcaactccaaaatatgggcttatctaccatgcatccttggttggtcaggcagcaccaaagcttaagggtaaaatctctcggacacttgctagcaaagctgtgctttcaataagaattgatgctcttagggagggagatagccaagataactcagtgggagtggaaagtcgaggcaaagtggaagcacggataaggagtcttgaaggcaaagcgttgagccagtctgctggatcggctaaaggaaaaccattgatagaagcctatgacaaggatcgcaagaagggggctggaggattgataactgctgccaaggcatataatcctgcagcagattcagttcttgggcaaacgactcctgctggaaagactgatgaaacaatggaagaggctccaggagataagaaagagaagaagaaaaggaagaaggatgatgacgaggacatgcctcagacaaatgacaatgtggaaccagaaagtgaagagcctgtgaagaaggaaaagaagaaaaagaagaaatcttcagctgaggatgttgaggtacagaatggcgagggagagaagaagaaaaggaaaagaaaacacgctgaagaagaggaagaatctgaagctccaagcaagaagaaagagaagaagaaaaagaagaagactgaggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030515 GO:0030684 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOP5NT Nop

Protein Analysis

552

Amino Acids

61.04

Weight (kDa)

8.92

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05060 AT5G27120
fragaria_vesca	FvH4_6g04090 FvH4_6g04090
malus_domestica	MD04G1216600.v1.1 MD12G1233200.v1.1
prunus_persica	Prupe.6G336300_v2.0.a1
pyrus_communis	pycom04g19260 pycom12g21570
rosa_chinensis	RchiOBHm_Chr3g0452641
rosa_laevigata	RLG00000025576
rosa_multiflora	Rmu_sc0022184.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429680
rosa_rugosa	Rorug02G0642100 Rorug02G0642100
rosa_samantha	Rh3AG044500 Rh3BG046800 Rh3CG045300 Rh3DG045700
rosa_wichuraiana	Rw3G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	409
AccB7I	CCANNNNNTGG	1 cut(s)	1016
AclWI	GGATC	2 cut(s)	1240, 1281
AcsI	RAATTY	3 cut(s)	101, 258, 856
AcuI	CTGAAG	3 cut(s)	1506, 1608, 1626
AfaI	GTAC	4 cut(s)	563, 597, 803, 1542
AfiI	CCNNNNNNNGG	1 cut(s)	1016
AflII	CTTAAG	1 cut(s)	1064
AgsI	TTSAA	9 cut(s)	17, 43, 52, 238, 279, 401, 706, 1110, 1205
AjnI	CCWGG	4 cut(s)	22, 420, 937, 1393
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
Alw21I	GWGCWC	2 cut(s)	892, 947
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	2 cut(s)	1240, 1281
ApeKI	GCWGC	7 cut(s)	185, 653, 713, 934, 1052, 1307, 1328
ApoI	RAATTY	3 cut(s)	101, 258, 856
Asp700I	GAANNNNTTC	2 cut(s)	146, 321
AspLEI	GCGC	2 cut(s)	85, 228
AsuHPI	GGTGA	2 cut(s)	266, 931
AsuNHI	GCTAGC	1 cut(s)	1091
BaeGI	GKGCMC	1 cut(s)	988
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanI	GGYRCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	811
BbsI	GAAGAC	1 cut(s)	1652
Bbv12I	GWGCWC	2 cut(s)	892, 947
BbvCI	CCTCAGC	2 cut(s)	78, 1527
BbvI	GCAGC	7 cut(s)	197, 640, 725, 946, 1064, 1294, 1340
BccI	CCATC	2 cut(s)	53, 628
BciT130I	CCWGG	4 cut(s)	24, 422, 939, 1395
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	3 cut(s)	284, 794, 1092
BfmI	CTRYAG	1 cut(s)	1326
BfrI	CTTAAG	1 cut(s)	1064
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	7 cut(s)	186, 654, 714, 935, 1053, 1308, 1329
BlsI	GCNGC	7 cut(s)	187, 655, 715, 936, 1054, 1309, 1330
Bme1390I	CCNGG	4 cut(s)	24, 422, 939, 1395
BmiI	GGNNCC	3 cut(s)	411, 1392, 1470
BmrFI	CCNGG	4 cut(s)	24, 422, 939, 1395
BmsI	GCATC	3 cut(s)	640, 1043, 1111
BmtI	GCTAGC	1 cut(s)	1095
BpiI	GAAGAC	1 cut(s)	1652
BpmI	CTGGAG	4 cut(s)	45, 132, 1311, 1377
Bpu10I	CCTNAGC	2 cut(s)	78, 1527
BpuEI	CTTGAG	2 cut(s)	440, 974
BsaBI	GATNNNNATC	1 cut(s)	761
BsaJI	CCNNGG	6 cut(s)	22, 421, 618, 938, 1038, 1311
Bsc4I	CCNNNNNNNGG	1 cut(s)	1016
Bse1I	ACTGG	2 cut(s)	115, 1222
Bse3DI	GCAATG	3 cut(s)	549, 846, 897
Bse8I	GATNNNNATC	1 cut(s)	761
BseBI	CCWGG	4 cut(s)	24, 422, 939, 1395
BseDI	CCNNGG	6 cut(s)	22, 421, 618, 938, 1038, 1311
BseGI	GGATG	4 cut(s)	843, 1034, 1435, 1537
BseJI	GATNNNNATC	1 cut(s)	761
BseLI	CCNNNNNNNGG	1 cut(s)	1016
BseMI	GCAATG	3 cut(s)	549, 846, 897
BseMII	CTCAG	6 cut(s)	69, 684, 1167, 1463, 1518, 1641
BseNI	ACTGG	2 cut(s)	115, 1222
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	7 cut(s)	197, 640, 725, 946, 1064, 1294, 1340
BseYI	CCCAGC	1 cut(s)	810
BshNI	GGYRCC	1 cut(s)	409
BsiHKAI	GWGCWC	2 cut(s)	892, 947
BslI	CCNNNNNNNGG	1 cut(s)	1016
BsmAI	GTCTC	1 cut(s)	689
Bsp1286I	GDGCHC	4 cut(s)	811, 892, 947, 988
Bsp143I	GATC	5 cut(s)	220, 514, 591, 1232, 1273
BspCNI	CTCAG	6 cut(s)	70, 683, 1166, 1462, 1519, 1642
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	411, 1392, 1470
BspMAI	CTGCAG	1 cut(s)	1330
BspOI	GCTAGC	1 cut(s)	1095
BspPI	GGATC	2 cut(s)	1240, 1281
BspQI	GCTCTTC	2 cut(s)	44, 1476
BspT107I	GGYRCC	1 cut(s)	409
BspTI	CTTAAG	1 cut(s)	1064
BsrDI	GCAATG	3 cut(s)	549, 846, 897
BsrI	ACTGG	2 cut(s)	115, 1222
BssECI	CCNNGG	6 cut(s)	22, 421, 618, 938, 1038, 1311
BssMI	GATC	5 cut(s)	220, 514, 591, 1232, 1273
BssT1I	CCWWGG	3 cut(s)	618, 1038, 1311
Bst2UI	CCWGG	4 cut(s)	24, 422, 939, 1395
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	4 cut(s)	44, 1380, 1476, 1587
BstAFI	CTTAAG	1 cut(s)	1064
BstC8I	GCNNGC	3 cut(s)	892, 1002, 1093
BstDEI	CTNAG	9 cut(s)	78, 588, 670, 996, 1127, 1153, 1449, 1527, 1650
BstF5I	GGATG	4 cut(s)	843, 1034, 1435, 1537
BstHHI	GCGC	2 cut(s)	85, 228
BstKTI	GATC	5 cut(s)	223, 517, 594, 1235, 1276
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	5 cut(s)	220, 514, 591, 1232, 1273
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 971, 1097, 1235, 1313
BstNI	CCWGG	4 cut(s)	24, 422, 939, 1395
BstNSI	RCATGY	2 cut(s)	1004, 1447
BstSCI	CCNGG	4 cut(s)	22, 420, 937, 1393
BstSFI	CTRYAG	1 cut(s)	1326
BstSLI	GKGCMC	1 cut(s)	988
BstV1I	GCAGC	7 cut(s)	197, 640, 725, 946, 1064, 1294, 1340
BstV2I	GAAGAC	1 cut(s)	1652
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	2 cut(s)	500, 1229
BstYI	RGATCY	1 cut(s)	220
BtsCI	GGATG	4 cut(s)	843, 1034, 1435, 1537
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	4 cut(s)	244, 469, 748, 1161
Cac8I	GCNNGC	3 cut(s)	892, 1002, 1093
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	2 cut(s)	85, 228
Csp6I	GTAC	4 cut(s)	562, 596, 802, 1541
CviAII	CATG	5 cut(s)	326, 905, 1001, 1031, 1444
CviQI	GTAC	4 cut(s)	562, 596, 802, 1541
DdeI	CTNAG	9 cut(s)	78, 588, 670, 996, 1127, 1153, 1449, 1527, 1650
DpnI	GATC	5 cut(s)	222, 516, 593, 1234, 1275
DpnII	GATC	5 cut(s)	220, 514, 591, 1232, 1273
Eam1104I	CTCTTC	4 cut(s)	44, 1380, 1476, 1587
EarI	CTCTTC	4 cut(s)	44, 1380, 1476, 1587
Eco130I	CCWWGG	3 cut(s)	618, 1038, 1311
Eco24I	GRGCYC	1 cut(s)	811
Eco57I	CTGAAG	3 cut(s)	1506, 1608, 1626
EcoRII	CCWGG	4 cut(s)	22, 420, 937, 1393
EcoT14I	CCWWGG	3 cut(s)	618, 1038, 1311
EcoT22I	ATGCAT	1 cut(s)	1036
EcoT38I	GRGCYC	1 cut(s)	811
ErhI	CCWWGG	3 cut(s)	618, 1038, 1311
FaeI	CATG	5 cut(s)	329, 908, 1004, 1034, 1447
FalI	AAGNNNNNCTT	4 cut(s)	962, 994, 1089, 1121
FatI	CATG	5 cut(s)	325, 904, 1000, 1030, 1443
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	7 cut(s)	186, 654, 714, 935, 1053, 1308, 1329
FokI	GGATG	4 cut(s)	850, 1021, 1442, 1544
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	7 cut(s)	186, 654, 714, 935, 1053, 1308, 1329
FspBI	CTAG	3 cut(s)	284, 794, 1092
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	2 cut(s)	84, 227
GluI	GCNGC	7 cut(s)	186, 654, 714, 935, 1053, 1308, 1329
GsaI	CCCAGC	1 cut(s)	814
GsuI	CTGGAG	4 cut(s)	45, 132, 1311, 1377
HhaI	GCGC	2 cut(s)	85, 228
Hin1II	CATG	5 cut(s)	329, 908, 1004, 1034, 1447
Hin6I	GCGC	2 cut(s)	83, 226
HinP1I	GCGC	2 cut(s)	83, 226
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	4 cut(s)	144, 174, 659, 1061
HinfI	GANTC	7 cut(s)	116, 275, 955, 1198, 1334, 1354, 1601
HphI	GGTGA	2 cut(s)	266, 931
Hpy166II	GTNNAC	5 cut(s)	69, 372, 392, 779, 922
Hpy188I	TCNGA	7 cut(s)	172, 673, 685, 954, 1083, 1452, 1606
Hpy188III	TCNNGA	8 cut(s)	235, 326, 401, 444, 518, 554, 991, 1202
Hpy8I	GTNNAC	5 cut(s)	69, 372, 392, 779, 922
HpyAV	CCTTC	6 cut(s)	91, 700, 1199, 1276, 1420, 1489
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	8 cut(s)	107, 272, 542, 851, 929, 1004, 1034, 1328
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 971, 1097, 1235, 1313
HpyF3I	CTNAG	9 cut(s)	78, 588, 670, 996, 1127, 1153, 1449, 1527, 1650
Hsp92II	CATG	5 cut(s)	329, 908, 1004, 1034, 1447
HspAI	GCGC	2 cut(s)	83, 226
Kzo9I	GATC	5 cut(s)	220, 514, 591, 1232, 1273
LguI	GCTCTTC	2 cut(s)	44, 1476
LmnI	GCTCC	5 cut(s)	877, 942, 962, 1396, 1615
Lsp1109I	GCAGC	7 cut(s)	197, 640, 725, 946, 1064, 1294, 1340
LweI	GCATC	3 cut(s)	640, 1043, 1111
MaeI	CTAG	3 cut(s)	284, 794, 1092
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	5 cut(s)	222, 516, 593, 1234, 1275
MboI	GATC	5 cut(s)	220, 514, 591, 1232, 1273
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	4 cut(s)	811, 892, 947, 988
MluCI	AATT	6 cut(s)	101, 258, 701, 856, 948, 1116
MlyI	GAGTC	3 cut(s)	125, 1207, 1348
Mph1103I	ATGCAT	1 cut(s)	1036
MroXI	GAANNNNTTC	2 cut(s)	146, 321
MseI	TTAA	3 cut(s)	297, 759, 1065
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	2 cut(s)	716, 1526
MspCI	CTTAAG	1 cut(s)	1064
MspR9I	CCNGG	4 cut(s)	24, 422, 939, 1395
MvaI	CCWGG	4 cut(s)	24, 422, 939, 1395
MwoI	GCNNNNNNNGC	5 cut(s)	182, 971, 1097, 1235, 1313
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	5 cut(s)	220, 514, 591, 1232, 1273
NheI	GCTAGC	1 cut(s)	1091
NlaIII	CATG	5 cut(s)	329, 908, 1004, 1034, 1447
NlaIV	GGNNCC	3 cut(s)	411, 1392, 1470
NmeAIII	GCCGAG	1 cut(s)	823
NmuCI	GTSAC	1 cut(s)	743
NsbI	TGCGCA	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	2 cut(s)	1004, 1447
PaeI	GCATGC	1 cut(s)	1004
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	2 cut(s)	44, 1476
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PdmI	GAANNNNTTC	2 cut(s)	146, 321
PfeI	GAWTC	4 cut(s)	275, 955, 1334, 1601
PflMI	CCANNNNNTGG	1 cut(s)	1016
PfoI	TCCNGGA	1 cut(s)	1393
PkrI	GCNGC	7 cut(s)	187, 655, 715, 936, 1054, 1309, 1330
PleI	GAGTC	3 cut(s)	124, 1206, 1348
PpsI	GAGTC	3 cut(s)	124, 1206, 1348
Psp6I	CCWGG	4 cut(s)	22, 420, 937, 1393
PspFI	CCCAGC	1 cut(s)	810
PspGI	CCWGG	4 cut(s)	22, 420, 937, 1393
PspN4I	GGNNCC	3 cut(s)	411, 1392, 1470
PstI	CTGCAG	1 cut(s)	1330
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	2 cut(s)	716, 1526
RsaI	GTAC	4 cut(s)	563, 597, 803, 1542
RsaNI	GTAC	4 cut(s)	562, 596, 802, 1541
RseI	CAYNNNNRTG	1 cut(s)	330
SapI	GCTCTTC	2 cut(s)	44, 1476
SaqAI	TTAA	3 cut(s)	297, 759, 1065
SatI	GCNGC	7 cut(s)	186, 654, 714, 935, 1053, 1308, 1329
Sau3AI	GATC	5 cut(s)	220, 514, 591, 1232, 1273
SchI	GAGTC	3 cut(s)	125, 1207, 1348
ScrFI	CCNGG	4 cut(s)	24, 422, 939, 1395
SduI	GDGCHC	4 cut(s)	811, 892, 947, 988
SfaNI	GCATC	3 cut(s)	640, 1043, 1111
SfcI	CTRYAG	1 cut(s)	1326
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	3 cut(s)	455, 989, 1064
SmoI	CTYRAG	3 cut(s)	455, 989, 1064
SphI	GCATGC	1 cut(s)	1004
Sse9I	AATT	6 cut(s)	101, 258, 701, 856, 948, 1116
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	3 cut(s)	284, 794, 1092
StyD4I	CCNGG	4 cut(s)	22, 420, 937, 1393
StyI	CCWWGG	3 cut(s)	618, 1038, 1311
TaaI	ACNGT	1 cut(s)	566
TaqI	TCGA	4 cut(s)	315, 445, 553, 1171
TasI	AATT	6 cut(s)	101, 258, 701, 856, 948, 1116
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	4 cut(s)	275, 955, 1334, 1601
Tru1I	TTAA	3 cut(s)	297, 759, 1065
Tru9I	TTAA	3 cut(s)	297, 759, 1065
TscAI	CASTG	4 cut(s)	251, 469, 748, 1161
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	7 cut(s)	185, 653, 713, 934, 1052, 1307, 1328
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	3 cut(s)	314, 854, 1389
TspGWI	ACGGA	1 cut(s)	1204
TspRI	CASTG	4 cut(s)	251, 469, 748, 1161
Van91I	CCANNNNNTGG	1 cut(s)	1016
Vha464I	CTTAAG	1 cut(s)	1064
XapI	RAATTY	3 cut(s)	101, 258, 856
XceI	RCATGY	2 cut(s)	1004, 1447
XmnI	GAANNNNTTC	2 cut(s)	146, 321
XspI	CTAG	3 cut(s)	284, 794, 1092
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.