RLG00000025576

Nucleolar protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
46809070 .. 46812226
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025576

Sequence Viewer

Length: 1668 bp
ATGCTTCTGTTGTTTGAAAACCCTGGAGGGTTTATGCTCTTCAAAGTTTTGAAAGATGATGGCAAGTTCACAAAAGCTGAGGCGCAGGACATAGCGAAGGAATTTGCAACTGGAGAGTCAGCAAGAAAGGTTGTAAAACTGAAAGCTTTCTCCAAGTTTGAGAATATGTCAGAAGCTTTGGAGGCAGCAACGATGTTGATCGAGAGTAAAACCACAAAAGATCTGCGCAAGTTCTTGAAAAAGCATTGCGAGGGTGAAATTCTGGGTGTTGCAGATTCAAAGCTAGGAAATATCATTAAGGAGAAACTGAAAATCGAATGTGTTCATGACAATGCTGTTATGGAGTTGATGAGAGGTGTTAGAAGTCAGTTGACTGAACTTATAACGGGTTTACAAGTTCAAGATATGGCACCAATGAGCTTGGGTTTATCTCATAGTTTATCTCGATACAAGCTCAAGTTCAGTGCCGATAAGGTTGATACAATGGTTATTCAAGCCATTGGTTTGCTTGATGATCTTGATAAAGAGCTAAATACATATGCAATGAGAGTTCGAGAATGGTACGGTTGGCATTTCCCAGAACTTGCTAAGATCATACAGGACAATATTGCTTATGCCAAGGTAGTAAAGCTGATGGGCTTTCGTGTTAATGCTGCCAAGCTTGATTTCTCAGAGATATTATCAGACGAGGTTGAGACTGAATTGAAGGAAGCAGCTGTTATATCTATGGGAACTGAAATTAGTGACCTTGATTTGATTAATATCAAAGAACTCTGTGAACAAGTCCTTTCTCTAGCCGAGTATAGAGCCCAGCTATTTGATTATCTAAAAACAAGGATGAACACCATTGCACCAAATTTGACTGCTTTGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCTCATGGTGGTAGCTTGGTGAACCTTGCAAAGCAGCCTGGGAGCACAATTCAGATTCTTGGAGCTGAAAAGGCTCTCTTTAGGGCACTCAAGACTAAGCATGCAACTCCAAAATATGGGCTTATCTACCATGCATCCTTGGTTGGTCAGGCAGCACCAAAGCTTAAGGGTAAAATCTCTCGGACACTTGCTAGCAAAGCTGTGCTTTCAATAAGAATTGATGCTCTTAGGGAGGGAGATAGCCAAGATAACTCTGTGGGAGTGGAAAGTCGAGGCAAAGTGGAAGCACGGATAAGGAGTCTTGAAGGCAAAGCGTTGAGCCAGTCTGCTGGATCGGCTAAAGGAAAACCATTGATAGAAGCCTATGACAAGGATCGTAAGAAGGGGGCTGGAGGATTGATAACTGCTGCCAAGGCATATAATCCTGCAGCAGATTCGGTTCTTGGGCAAATGACTCCTGCTGGAAAGACTGATGAAACAATGGAAGAGGCTCCAGGAGATAAGAAAGAGAAGAAGAAAAGGAAGAAGGATGATGACGAGGACATGCCTGAGACAAATGACAATGTGGAACCAGAAAGTGAAGAGCCTGTGAAGAAGGAAAAGAAGGAAAAGAAGAAAAAGAAGAAATCTTCAGCTGAGGATGTTGAGGTACAGAATGGCGAGGGAGAGAAGAAGAAAAGGAAAAGAAAACACGCCGAAGAAGAGGAAGAATCTGAAGCTCCAAGCAAGAAGAAAGAGAAGAAGAAAAAGAAGAAGACTGAGGATTGA

Protein Analysis

556

Amino Acids

61.47

Weight (kDa)

8.97

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOP5NT PF08156 2 - 69 2.1e-15 NOP5NT (NUC127) domain
Nop PF01798 169 - 399 1.1e-84 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011411)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
Acc16I TGCGCA 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 1016
AclWI GGATC 2 cut(s) 1240, 1281
AcsI RAATTY 3 cut(s) 101, 258, 856
AcuI CTGAAG 2 cut(s) 1515, 1635
AfaI GTAC 2 cut(s) 563, 1551
AfiI CCNNNNNNNGG 1 cut(s) 1016
AflII CTTAAG 1 cut(s) 1064
AjnI CCWGG 3 cut(s) 22, 937, 1393
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
Alw21I GWGCWC 2 cut(s) 892, 947
Alw26I GTCTC 2 cut(s) 689, 1445
AlwI GGATC 2 cut(s) 1240, 1281
ApeKI GCWGC 7 cut(s) 185, 653, 713, 934, 1052, 1307, 1328
ApoI RAATTY 3 cut(s) 101, 258, 856
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 2 cut(s) 146, 321
AspLEI GCGC 2 cut(s) 85, 228
AsuHPI GGTGA 2 cut(s) 266, 931
AsuNHI GCTAGC 1 cut(s) 1091
BaeGI GKGCMC 1 cut(s) 988
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 811
BbsI GAAGAC 1 cut(s) 1661
Bbv12I GWGCWC 2 cut(s) 892, 947
BbvCI CCTCAGC 2 cut(s) 78, 1536
BbvI GCAGC 7 cut(s) 197, 640, 725, 946, 1064, 1294, 1340
BccI CCATC 2 cut(s) 53, 628
BcgI CGANNNNNNTGC 2 cut(s) 1317, 1351
BciT130I CCWGG 3 cut(s) 24, 939, 1395
BcoDI GTCTC 2 cut(s) 689, 1445
BfaI CTAG 3 cut(s) 284, 794, 1092
BfmI CTRYAG 1 cut(s) 1326
BfrI CTTAAG 1 cut(s) 1064
BglII AGATCT 1 cut(s) 220
BisI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
BlsI GCNGC 7 cut(s) 187, 655, 715, 936, 1054, 1309, 1330
Bme1390I CCNGG 3 cut(s) 24, 939, 1395
BmiI GGNNCC 3 cut(s) 411, 1392, 1470
BmrFI CCNGG 3 cut(s) 24, 939, 1395
BmsI GCATC 2 cut(s) 1043, 1111
BmtI GCTAGC 1 cut(s) 1095
BpiI GAAGAC 1 cut(s) 1661
BpmI CTGGAG 4 cut(s) 45, 132, 1311, 1377
Bpu10I CCTNAGC 2 cut(s) 78, 1536
BpuEI CTTGAG 2 cut(s) 440, 974
BsaBI GATNNNNATC 2 cut(s) 197, 761
BsaJI CCNNGG 5 cut(s) 22, 618, 938, 1038, 1311
Bsc4I CCNNNNNNNGG 1 cut(s) 1016
Bse1I ACTGG 2 cut(s) 115, 1222
Bse3DI GCAATG 4 cut(s) 244, 549, 846, 897
Bse8I GATNNNNATC 2 cut(s) 197, 761
BseBI CCWGG 3 cut(s) 24, 939, 1395
BseDI CCNNGG 5 cut(s) 22, 618, 938, 1038, 1311
BseGI GGATG 4 cut(s) 843, 1034, 1435, 1546
BseJI GATNNNNATC 2 cut(s) 197, 761
BseLI CCNNNNNNNGG 1 cut(s) 1016
BseMI GCAATG 4 cut(s) 244, 549, 846, 897
BseMII CTCAG 5 cut(s) 69, 684, 1440, 1527, 1650
BseNI ACTGG 2 cut(s) 115, 1222
BseSI GKGCMC 1 cut(s) 988
BseXI GCAGC 7 cut(s) 197, 640, 725, 946, 1064, 1294, 1340
BseYI CCCAGC 1 cut(s) 810
BshNI GGYRCC 1 cut(s) 409
BsiHKAI GWGCWC 2 cut(s) 892, 947
BslI CCNNNNNNNGG 1 cut(s) 1016
BsmAI GTCTC 2 cut(s) 689, 1445
Bsp1286I GDGCHC 4 cut(s) 811, 892, 947, 988
Bsp143I GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
BspCNI CTCAG 5 cut(s) 70, 683, 1441, 1528, 1651
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 411, 1392, 1470
BspMAI CTGCAG 1 cut(s) 1330
BspOI GCTAGC 1 cut(s) 1095
BspPI GGATC 2 cut(s) 1240, 1281
BspQI GCTCTTC 2 cut(s) 44, 1476
BspT107I GGYRCC 1 cut(s) 409
BspTI CTTAAG 1 cut(s) 1064
BsrDI GCAATG 4 cut(s) 244, 549, 846, 897
BsrI ACTGG 2 cut(s) 115, 1222
BssECI CCNNGG 5 cut(s) 22, 618, 938, 1038, 1311
BssMI GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
BssT1I CCWWGG 3 cut(s) 618, 1038, 1311
Bst2UI CCWGG 3 cut(s) 24, 939, 1395
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 4 cut(s) 44, 1380, 1476, 1596
BstAFI CTTAAG 1 cut(s) 1064
BstC8I GCNNGC 3 cut(s) 892, 1002, 1093
BstDEI CTNAG 8 cut(s) 78, 588, 670, 996, 1127, 1449, 1536, 1659
BstF5I GGATG 4 cut(s) 843, 1034, 1435, 1546
BstHHI GCGC 2 cut(s) 85, 228
BstKTI GATC 6 cut(s) 201, 223, 517, 594, 1235, 1276
BstMAI GTCTC 2 cut(s) 689, 1445
BstMBI GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
BstMWI GCNNNNNNNGC 5 cut(s) 182, 971, 1097, 1235, 1313
BstNI CCWGG 3 cut(s) 24, 939, 1395
BstNSI RCATGY 2 cut(s) 1004, 1447
BstSCI CCNGG 3 cut(s) 22, 937, 1393
BstSFI CTRYAG 1 cut(s) 1326
BstSLI GKGCMC 1 cut(s) 988
BstV1I GCAGC 7 cut(s) 197, 640, 725, 946, 1064, 1294, 1340
BstV2I GAAGAC 1 cut(s) 1661
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 1229
BstYI RGATCY 1 cut(s) 220
BtsCI GGATG 4 cut(s) 843, 1034, 1435, 1546
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 3 cut(s) 892, 1002, 1093
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 85, 228
Csp6I GTAC 2 cut(s) 562, 1550
CviAII CATG 5 cut(s) 326, 905, 1001, 1031, 1444
CviQI GTAC 2 cut(s) 562, 1550
DdeI CTNAG 8 cut(s) 78, 588, 670, 996, 1127, 1449, 1536, 1659
DpnI GATC 6 cut(s) 200, 222, 516, 593, 1234, 1275
DpnII GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
Eam1104I CTCTTC 4 cut(s) 44, 1380, 1476, 1596
EarI CTCTTC 4 cut(s) 44, 1380, 1476, 1596
Eco130I CCWWGG 3 cut(s) 618, 1038, 1311
Eco24I GRGCYC 1 cut(s) 811
Eco57I CTGAAG 2 cut(s) 1515, 1635
EcoRII CCWGG 3 cut(s) 22, 937, 1393
EcoT14I CCWWGG 3 cut(s) 618, 1038, 1311
EcoT22I ATGCAT 1 cut(s) 1036
EcoT38I GRGCYC 1 cut(s) 811
ErhI CCWWGG 3 cut(s) 618, 1038, 1311
FaeI CATG 5 cut(s) 329, 908, 1004, 1034, 1447
FalI AAGNNNNNCTT 4 cut(s) 962, 994, 1089, 1121
FatI CATG 5 cut(s) 325, 904, 1000, 1030, 1443
FauNDI CATATG 1 cut(s) 538
Fnu4HI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
FokI GGATG 4 cut(s) 850, 1021, 1442, 1553
FriOI GRGCYC 1 cut(s) 811
Fsp4HI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
FspBI CTAG 3 cut(s) 284, 794, 1092
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 2 cut(s) 84, 227
GluI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
GsaI CCCAGC 1 cut(s) 814
GsuI CTGGAG 4 cut(s) 45, 132, 1311, 1377
HhaI GCGC 2 cut(s) 85, 228
Hin1II CATG 5 cut(s) 329, 908, 1004, 1034, 1447
Hin6I GCGC 2 cut(s) 83, 226
HinP1I GCGC 2 cut(s) 83, 226
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 4 cut(s) 144, 174, 659, 1061
HinfI GANTC 7 cut(s) 116, 275, 955, 1198, 1334, 1354, 1610
HphI GGTGA 2 cut(s) 266, 931
Hpy166II GTNNAC 5 cut(s) 69, 372, 392, 779, 922
Hpy188I TCNGA 6 cut(s) 172, 673, 685, 954, 1083, 1615
Hpy188III TCNNGA 9 cut(s) 202, 235, 326, 401, 444, 518, 554, 991, 1202
Hpy8I GTNNAC 5 cut(s) 69, 372, 392, 779, 922
HpyAV CCTTC 7 cut(s) 91, 700, 1199, 1276, 1420, 1489, 1498
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 8 cut(s) 107, 272, 542, 851, 929, 1004, 1034, 1328
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 971, 1097, 1235, 1313
HpyF3I CTNAG 8 cut(s) 78, 588, 670, 996, 1127, 1449, 1536, 1659
Hsp92II CATG 5 cut(s) 329, 908, 1004, 1034, 1447
HspAI GCGC 2 cut(s) 83, 226
Kzo9I GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
LguI GCTCTTC 2 cut(s) 44, 1476
LmnI GCTCC 5 cut(s) 877, 942, 962, 1396, 1624
Lsp1109I GCAGC 7 cut(s) 197, 640, 725, 946, 1064, 1294, 1340
LweI GCATC 2 cut(s) 1043, 1111
MaeI CTAG 3 cut(s) 284, 794, 1092
MaeIII GTNAC 1 cut(s) 743
MalI GATC 6 cut(s) 200, 222, 516, 593, 1234, 1275
MboI GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 4 cut(s) 811, 892, 947, 988
MluCI AATT 7 cut(s) 101, 258, 701, 738, 856, 948, 1116
MlyI GAGTC 3 cut(s) 125, 1207, 1348
Mph1103I ATGCAT 1 cut(s) 1036
MroXI GAANNNNTTC 2 cut(s) 146, 321
MseI TTAA 4 cut(s) 297, 648, 759, 1065
MslI CAYNNNNRTG 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 716, 1535
MspCI CTTAAG 1 cut(s) 1064
MspR9I CCNGG 3 cut(s) 24, 939, 1395
MvaI CCWGG 3 cut(s) 24, 939, 1395
MwoI GCNNNNNNNGC 5 cut(s) 182, 971, 1097, 1235, 1313
NdeI CATATG 1 cut(s) 538
NdeII GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
NheI GCTAGC 1 cut(s) 1091
NlaIII CATG 5 cut(s) 329, 908, 1004, 1034, 1447
NlaIV GGNNCC 3 cut(s) 411, 1392, 1470
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 1 cut(s) 743
NsbI TGCGCA 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 1036
NspI RCATGY 2 cut(s) 1004, 1447
PaeI GCATGC 1 cut(s) 1004
PagI TCATGA 1 cut(s) 325
PciSI GCTCTTC 2 cut(s) 44, 1476
PdmI GAANNNNTTC 2 cut(s) 146, 321
PfeI GAWTC 4 cut(s) 275, 955, 1334, 1610
PflMI CCANNNNNTGG 1 cut(s) 1016
PfoI TCCNGGA 1 cut(s) 1393
PkrI GCNGC 7 cut(s) 187, 655, 715, 936, 1054, 1309, 1330
PleI GAGTC 3 cut(s) 124, 1206, 1348
PpsI GAGTC 3 cut(s) 124, 1206, 1348
PshBI ATTAAT 1 cut(s) 759
PsiI TTATAA 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 22, 937, 1393
PspFI CCCAGC 1 cut(s) 810
PspGI CCWGG 3 cut(s) 22, 937, 1393
PspN4I GGNNCC 3 cut(s) 411, 1392, 1470
PstI CTGCAG 1 cut(s) 1330
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 2 cut(s) 716, 1535
RsaI GTAC 2 cut(s) 563, 1551
RsaNI GTAC 2 cut(s) 562, 1550
RseI CAYNNNNRTG 1 cut(s) 330
SapI GCTCTTC 2 cut(s) 44, 1476
SaqAI TTAA 4 cut(s) 297, 648, 759, 1065
SatI GCNGC 7 cut(s) 186, 654, 714, 935, 1053, 1308, 1329
Sau3AI GATC 6 cut(s) 198, 220, 514, 591, 1232, 1273
SchI GAGTC 3 cut(s) 125, 1207, 1348
ScrFI CCNGG 3 cut(s) 24, 939, 1395
SduI GDGCHC 4 cut(s) 811, 892, 947, 988
SfaNI GCATC 2 cut(s) 1043, 1111
SfcI CTRYAG 1 cut(s) 1326
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 3 cut(s) 455, 989, 1064
SmoI CTYRAG 3 cut(s) 455, 989, 1064
SphI GCATGC 1 cut(s) 1004
Sse9I AATT 7 cut(s) 101, 258, 701, 738, 856, 948, 1116
SspI AATATT 1 cut(s) 607
SspMI CTAG 3 cut(s) 284, 794, 1092
StyD4I CCNGG 3 cut(s) 22, 937, 1393
StyI CCWWGG 3 cut(s) 618, 1038, 1311
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 5 cut(s) 201, 315, 445, 553, 1171
TasI AATT 7 cut(s) 101, 258, 701, 738, 856, 948, 1116
TfiI GAWTC 4 cut(s) 275, 955, 1334, 1610
Tru1I TTAA 4 cut(s) 297, 648, 759, 1065
Tru9I TTAA 4 cut(s) 297, 648, 759, 1065
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 7 cut(s) 185, 653, 713, 934, 1052, 1307, 1328
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 3 cut(s) 314, 854, 1389
TspGWI ACGGA 1 cut(s) 1204
TspRI CASTG 1 cut(s) 469
Van91I CCANNNNNTGG 1 cut(s) 1016
Vha464I CTTAAG 1 cut(s) 1064
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 3 cut(s) 101, 258, 856
XceI RCATGY 2 cut(s) 1004, 1447
XmnI GAANNNNTTC 2 cut(s) 146, 321
XspI CTAG 3 cut(s) 284, 794, 1092
Zsp2I ATGCAT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.