AT3G05090

WD repeat-containing protein 48-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007420
Physical Location & Seq
Reverse (-)
1417893 .. 1423673
5781 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05090.1

Sequence Viewer

Length: 2262 bp
ATGCACCGGGTTGGAAGTGCCGGCAGTAATGGCGGTTCTGTTCGCACTCGCAAAGAGAAAAAGCTTACTTATGTGTTAAATGATGCCAACGATACAAAGCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGTTTCTAATGATCAAAGCTACCTCTTCACTGGAAGTCGTGATGGTACACTCAAGAGATGGGCATTTGACGAGGATGCGACCTTCTGCTCAGCTACATTTGAGTCTCATGTTGACTGGGTGAACGACGCTGCTCTGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAAGACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAAATAATAATGTTGTTGCATCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATTGAAGCTGCTTTGTCACCAGTTACCAAACCTAATGACGCTAATGAAGATAGTTCTTCAAATGGTGCAAATGGTCCTGTTACAAGTTTAAGAACTGTTGGTTCAAGCAACAATATCTCTGTGCAGTCATCTCCATCTCATGGGTACACACCAACAATTGCGAAAGGCCATAAGGAGTCTGTGTATGCTTTGGCGATGAATGATACCGGAACGATGCTCGTTTCTGGTGGAACAGAAAAGGTTTTACGTGTCTGGGACCCTAGAACCGGTTCAAAGAGTATGAAGCTGAGAGGGCATACAGATAATGTTAGAGTGCTGCTTCTGGACTCAACTGGCAGGTTTTGCTTGTCTGGGTCGTCTGATTCTATGATAAGACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTATAGCGGTGGAAGAGACCAATGTTTATACTTGACAGACTTGGCAACAAGGGAGAGTGTTTTGCTGTGCACTAAGGAACATCCAATTCAACAATTAGCGTTGCAAGATAATAGTATATGGGTTGCAACTACAGACTCCTCTGTAGAGAGATGGCCTGCCGAAGTACAGAGTCCTAAAACGGTCTTTCAACGAGGTGGCTCCTTCTTGGCTGGGAATTTGTCTTTTAATAGGGCGAGGGTATCTTTGGAAGGACTAAATCCAGCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATTGTGCAACATGAGATTTTGAATAATAAAAGGCAAATTTTAACCAAGGACGCAGCTGGCTCAGTGAAACTATGGGATATAACTAGGGGTGTTGTGGTAGAGGACTATGGAAAGATTTCATTTGAAGAGAAGAAAGAAGAACTGTTTGAGATGGTAAGCATTCCATCGTGGTTTACTGTGGATACACGACTTGGATGCTTATCTGTACATTTGGAGACTCCACAATGCTTCTCTGCTGAAATGTATTCAGCAGACCTTAAAGTTTCTGGGCGACCTGAAGATGATAAGATTAATCTAGCTCGTGAAACACTGAAAGGCCTGCTGGGTCACTGGCTGGCAAAGAAGAAACACAAACCAAAACCCCAAGTTCTTGCCTCTGGAGATACTTTATCTGTAAAAGATACCAAAAAAAATCTAAGTGCATCAAAAACTGAAGAGAGTAGTGCTGCAAGTGATCCGGTGTATCCTCCATTCGAGTTTTCTTCCGTCTCCCCTCCTTCCATCATAACTGAGGGTTCTCAAGGAGGACCATGGAGGAAGAAGATAACCGAGTTTACTGGAACTGAAGATGAGAAGGACTTCCCATTGTGGTGCTTGGACGCTGTCTTGAACAATCGGCTTCCACCTAGAGAAAATACAAAATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCGGTGCAGGTGGTTACACTAGGGAAACTTAGTGCACCCCGGATCTTAAGAGTTCACAAGGTTACCAATTACGTTGTGGAAAAGATGGTCCTTGACAATCCGTTGGATAGTCTAGCTATTGATGCAGCAAGTGTTTCAGGAGGACAACCTCAGCCACTGTTTTCAGGAAATGGATTGTTACAGTCTGGATTAAAGCCTTGGCAGAAACTTAGACCTTCCATTGAGATCTTATGTAATAGCCAGGTCTTATCTCCAGATATGAGTTTAGCAACTGTACGGGCATATGTATGGAAGAAACCTGAGGATCTGATTCTCAACTACAGAGTGGCTATAGCTAGATAA

Protein Analysis

753

Amino Acids

82.2

Weight (kDa)

6.81

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 32 - 111 2e-06 TEP-1 second beta-propeller
WD40_Prp19 PF24814 36 - 244 1.7e-18 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 41 - 145 8.3e-09 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 43 - 164 7.5e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 47 - 158 9.5e-18 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 47 - 156 1.5e-12 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 48 - 158 1.3e-06 WDHD1 first WD40 domain
WDR55 PF24796 48 - 154 1.6e-06 WDR55
Beta-prop_THOC3 PF25174 48 - 158 2.8e-12 THOC3 beta-propeller domain
NBCH_WD40 PF20426 94 - 173 5.3e-06 Neurobeachin beta propeller domain
WD40_CDC20-Fz PF24807 123 - 261 2e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 151 - 321 4.2e-27 WDR3 first beta-propeller domain
WDR55 PF24796 185 - 288 1.7e-08 WDR55
WD40_WDHD1_1st PF24817 189 - 296 1.8e-12 WDHD1 first WD40 domain
EIF3I PF24805 206 - 296 9.1e-09 EIF3I
Beta-prop_TEP1_2nd PF25047 207 - 345 1.1e-10 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 208 - 292 4.1e-08 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 208 - 364 3.1e-21 WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 210 - 323 4.1e-06 MABP1/WDR62 second WD40 domain
Beta-prop_SPT8 PF23798 210 - 312 4.8e-06 SPT8 beta propeller
Beta-prop_WDR3_2nd PF25172 210 - 283 7.8e-09 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 212 - 365 2.4e-23 THOC3 beta-propeller domain
WD40_Prp19 PF24814 213 - 346 1.9e-18 Prp19 WD40 domain
WD40_Gbeta PF25391 223 - 338 2.7e-10 G protein beta WD-40 repeat protein
WD40 PF00400 248 - 283 4.5e-06 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 249 - 360 2.7e-06 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 265 - 363 6.6e-06 CDC20/Fizzy WD40 domain
DUF3337 PF11816 606 - 748 9.6e-27 Domain of unknown function (DUF3337)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1918
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 2 cut(s) 792, 1918
AccB7I CCANNNNNTGG 1 cut(s) 605
AciI CCGC 4 cut(s) 33, 404, 881, 942
AclWI GGATC 4 cut(s) 855, 1694, 1970, 2232
AcsI RAATTY 2 cut(s) 1150, 1281
AcuI CTGAAG 4 cut(s) 291, 1542, 1698, 1830
AfaI GTAC 6 cut(s) 187, 355, 611, 1101, 1452, 2196
AfiI CCNNNNNNNGG 4 cut(s) 445, 605, 731, 1913
AflII CTTAAG 1 cut(s) 1966
AflIII ACRYGT 1 cut(s) 712
AgeI ACCGGT 1 cut(s) 731
AhdI GACNNNNNGTC 1 cut(s) 366
AjnI CCWGG 2 cut(s) 1231, 2160
Alw21I GWGCWC 3 cut(s) 290, 1007, 1957
Alw26I GTCTC 4 cut(s) 249, 945, 1454, 1738
Alw44I GTGCAC 2 cut(s) 1003, 1953
AlwI GGATC 4 cut(s) 855, 1694, 1970, 2232
AlwNI CAGNNNCTG 3 cut(s) 896, 1202, 2077
AoxI GGCC 4 cut(s) 436, 631, 1088, 1561
ApaLI GTGCAC 2 cut(s) 1003, 1953
ApeKI GCWGC 7 cut(s) 269, 473, 781, 859, 1298, 1691, 2045
ApoI RAATTY 2 cut(s) 1150, 1281
AseI ATTAAT 1 cut(s) 1536
AsiGI ACCGGT 1 cut(s) 731
Asp700I GAANNNNTTC 3 cut(s) 733, 1360, 1823
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 4 cut(s) 539, 721, 1772, 2008
AsuC2I CCSGG 2 cut(s) 8, 1960
AsuHPI GGTGA 4 cut(s) 271, 293, 474, 1232
AvaII GGWCC 4 cut(s) 539, 721, 1772, 2008
AxyI CCTNAGG 1 cut(s) 2220
BaeGI GKGCMC 2 cut(s) 1007, 1957
BauI CACGAG 1 cut(s) 1545
BbsI GAAGAC 1 cut(s) 860
Bbv12I GWGCWC 3 cut(s) 290, 1007, 1957
BbvCI CCTCAGC 1 cut(s) 2070
BbvI GCAGC 7 cut(s) 256, 460, 768, 871, 1310, 1678, 2057
BceAI ACGGC 1 cut(s) 1201
BcgI CGANNNNNNTGC 2 cut(s) 1422, 1456
BciT130I CCWGG 2 cut(s) 1233, 2162
BciVI GTATCC 2 cut(s) 1420, 1719
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 2 cut(s) 8, 1960
BcoDI GTCTC 4 cut(s) 249, 945, 1454, 1738
BfaI CTAG 8 cut(s) 726, 851, 1329, 1541, 1872, 1940, 2033, 2256
BfmI CTRYAG 4 cut(s) 1065, 1077, 2239, 2250
BfoI RGCGCY 1 cut(s) 908
BfrI CTTAAG 1 cut(s) 1966
BfuAI ACCTGC 2 cut(s) 792, 1918
BfuI GTATCC 2 cut(s) 1420, 1719
BglII AGATCT 1 cut(s) 2145
BisI GCNGC 8 cut(s) 270, 405, 474, 782, 860, 1299, 1692, 2046
BlpI GCTNAGC 1 cut(s) 229
BlsI GCNGC 8 cut(s) 271, 406, 475, 783, 861, 1300, 1693, 2047
Bme1390I CCNGG 4 cut(s) 8, 1233, 1960, 2162
Bme18I GGWCC 4 cut(s) 539, 721, 1772, 2008
BmeRI GACNNNNNGTC 1 cut(s) 366
BmgT120I GGNCC 4 cut(s) 539, 721, 1772, 2008
BmiI GGNNCC 4 cut(s) 722, 723, 1135, 1215
BmrFI CCNGG 4 cut(s) 8, 1233, 1960, 2162
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 8 cut(s) 73, 205, 437, 669, 1430, 1676, 1912, 2032
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 860
BpmI CTGGAG 2 cut(s) 1644, 2157
Bpu10I CCTNAGC 1 cut(s) 2070
Bpu1102I GCTNAGC 1 cut(s) 229
BpuEI CTTGAG 2 cut(s) 176, 1749
BpuMI CCSGG 2 cut(s) 8, 1960
BsaAI YACGTR 1 cut(s) 713
BsaBI GATNNNNATC 1 cut(s) 1444
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 6 cut(s) 439, 1231, 1290, 1775, 1958, 2117
BsaWI WCCGGW 3 cut(s) 671, 731, 1702
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 4 cut(s) 445, 605, 731, 1913
Bse118I RCCGGY 2 cut(s) 20, 731
Bse1I ACTGG 6 cut(s) 175, 260, 485, 802, 1580, 1807
Bse21I CCTNAGG 1 cut(s) 2220
Bse8I GATNNNNATC 1 cut(s) 1444
BseBI CCWGG 2 cut(s) 1233, 2162
BseDI CCNNGG 6 cut(s) 439, 1231, 1290, 1775, 1958, 2117
BseGI GGATG 5 cut(s) 130, 220, 1015, 1445, 1903
BseJI GATNNNNATC 1 cut(s) 1444
BseLI CCNNNNNNNGG 4 cut(s) 445, 605, 731, 1913
BseMII CTCAG 6 cut(s) 243, 743, 1320, 1746, 2084, 2211
BseNI ACTGG 6 cut(s) 175, 260, 485, 802, 1580, 1807
BseRI GAGGAG 1 cut(s) 1063
BseSI GKGCMC 2 cut(s) 1007, 1957
BseXI GCAGC 7 cut(s) 256, 460, 768, 871, 1310, 1678, 2057
BseYI CCCAGC 2 cut(s) 1145, 1567
BsgI GTGCAG 2 cut(s) 608, 1946
BshFI GGCC 4 cut(s) 438, 633, 1090, 1563
BshTI ACCGGT 1 cut(s) 731
BsiHKAI GWGCWC 3 cut(s) 290, 1007, 1957
BsiSI CCGG 6 cut(s) 7, 21, 672, 732, 1703, 1960
BslFI GGGAC 3 cut(s) 344, 734, 1214
BslI CCNNNNNNNGG 4 cut(s) 445, 605, 731, 1913
BsmAI GTCTC 4 cut(s) 249, 945, 1454, 1738
BsmBI CGTCTC 1 cut(s) 1738
BsmFI GGGAC 3 cut(s) 344, 734, 1214
BsmI GAATGC 2 cut(s) 373, 1404
BsnI GGCC 4 cut(s) 438, 633, 1090, 1563
Bso31I GGTCTC 1 cut(s) 945
Bsp1286I GDGCHC 3 cut(s) 290, 1007, 1957
Bsp1407I TGTACA 1 cut(s) 1450
Bsp143I GATC 6 cut(s) 151, 847, 1699, 1962, 2145, 2224
Bsp1720I GCTNAGC 1 cut(s) 229
Bsp19I CCATGG 1 cut(s) 1775
BspACI CCGC 4 cut(s) 33, 404, 881, 942
BspANI GGCC 4 cut(s) 438, 633, 1090, 1563
BspCNI CTCAG 6 cut(s) 242, 744, 1319, 1747, 2083, 2212
BspLI GGNNCC 4 cut(s) 722, 723, 1135, 1215
BspMI ACCTGC 2 cut(s) 792, 1918
BspPI GGATC 4 cut(s) 855, 1694, 1970, 2232
BspTI CTTAAG 1 cut(s) 1966
BspTNI GGTCTC 1 cut(s) 945
BsrFI RCCGGY 2 cut(s) 20, 731
BsrGI TGTACA 1 cut(s) 1450
BsrI ACTGG 6 cut(s) 175, 260, 485, 802, 1580, 1807
BssAI RCCGGY 2 cut(s) 20, 731
BssECI CCNNGG 6 cut(s) 439, 1231, 1290, 1775, 1958, 2117
BssMI GATC 6 cut(s) 151, 847, 1699, 1962, 2145, 2224
BssSI CACGAG 1 cut(s) 1545
BssT1I CCWWGG 4 cut(s) 439, 1290, 1775, 2117
Bst2BI CACGAG 1 cut(s) 1545
Bst2UI CCWGG 2 cut(s) 1233, 2162
Bst6I CTCTTC 4 cut(s) 170, 943, 1365, 1674
BstAFI CTTAAG 1 cut(s) 1966
BstAPI GCANNNNNTGC 2 cut(s) 117, 807
BstAUI TGTACA 1 cut(s) 1450
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 8 cut(s) 22, 109, 909, 913, 1092, 1303, 1565, 1581
BstDSI CCRYGG 1 cut(s) 1775
BstEII GGTNACC 1 cut(s) 1981
BstF5I GGATG 5 cut(s) 130, 220, 1015, 1445, 1903
BstH2I RGCGCY 1 cut(s) 908
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 6 cut(s) 154, 850, 1702, 1965, 2148, 2227
BstMAI GTCTC 4 cut(s) 249, 945, 1454, 1738
BstMBI GATC 6 cut(s) 151, 847, 1699, 1962, 2145, 2224
BstMWI GCNNNNNNNGC 7 cut(s) 30, 117, 275, 404, 757, 807, 2042
BstNI CCWGG 2 cut(s) 1233, 2162
BstNSI RCATGY 1 cut(s) 915
BstPI GGTNACC 1 cut(s) 1981
BstSCI CCNGG 4 cut(s) 6, 1231, 1958, 2160
BstSFI CTRYAG 4 cut(s) 1065, 1077, 2239, 2250
BstSLI GKGCMC 2 cut(s) 1007, 1957
BstV1I GCAGC 7 cut(s) 256, 460, 768, 871, 1310, 1678, 2057
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 4 cut(s) 847, 1962, 2145, 2224
BstYI RGATCY 4 cut(s) 847, 1962, 2145, 2224
Bsu36I CCTNAGG 1 cut(s) 2220
BsuI GTATCC 2 cut(s) 1420, 1719
BsuRI GGCC 4 cut(s) 438, 633, 1090, 1563
BtgI CCRYGG 1 cut(s) 1775
BtgZI GCGATG 2 cut(s) 674, 877
BtsCI GGATG 5 cut(s) 130, 220, 1015, 1445, 1903
BtsIMutI CAGTG 5 cut(s) 168, 1314, 1553, 1573, 2075
BveI ACCTGC 2 cut(s) 792, 1918
Cac8I GCNNGC 8 cut(s) 22, 109, 909, 913, 1092, 1303, 1565, 1581
CaiI CAGNNNCTG 3 cut(s) 896, 1202, 2077
CfoI GCGC 1 cut(s) 907
Cfr10I RCCGGY 2 cut(s) 20, 731
Cfr13I GGNCC 4 cut(s) 539, 721, 1772, 2008
CseI GACGC 4 cut(s) 275, 512, 1304, 1853
Csp6I GTAC 6 cut(s) 186, 354, 610, 1100, 1451, 2195
CspAI ACCGGT 1 cut(s) 731
CviAII CATG 8 cut(s) 248, 327, 605, 912, 932, 1256, 1776, 1908
CviQI GTAC 6 cut(s) 186, 354, 610, 1100, 1451, 2195
DpnI GATC 6 cut(s) 153, 849, 1701, 1964, 2147, 2226
DpnII GATC 6 cut(s) 151, 847, 1699, 1962, 2145, 2224
DrdI GACNNNNNNGTC 1 cut(s) 317
DriI GACNNNNNGTC 1 cut(s) 366
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 4 cut(s) 170, 943, 1365, 1674
Eam1105I GACNNNNNGTC 1 cut(s) 366
EarI CTCTTC 4 cut(s) 170, 943, 1365, 1674
Eco130I CCWWGG 4 cut(s) 439, 1290, 1775, 2117
Eco147I AGGCCT 1 cut(s) 1563
Eco31I GGTCTC 1 cut(s) 945
Eco47I GGWCC 4 cut(s) 539, 721, 1772, 2008
Eco57I CTGAAG 4 cut(s) 291, 1542, 1698, 1830
Eco81I CCTNAGG 1 cut(s) 2220
Eco91I GGTNACC 1 cut(s) 1981
EcoO109I RGGNCCY 1 cut(s) 721
EcoO65I GGTNACC 1 cut(s) 1981
EcoRII CCWGG 2 cut(s) 1231, 2160
EcoT14I CCWWGG 4 cut(s) 439, 1290, 1775, 2117
ErhI CCWWGG 4 cut(s) 439, 1290, 1775, 2117
Esp3I CGTCTC 1 cut(s) 1738
FaeI CATG 8 cut(s) 251, 330, 608, 915, 935, 1259, 1779, 1911
FaqI GGGAC 3 cut(s) 344, 734, 1214
FatI CATG 8 cut(s) 247, 326, 604, 911, 931, 1255, 1775, 1907
FauNDI CATATG 1 cut(s) 2203
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 8 cut(s) 270, 405, 474, 782, 860, 1299, 1692, 2046
FokI GGATG 5 cut(s) 137, 227, 1002, 1452, 1890
Fsp4HI GCNGC 8 cut(s) 270, 405, 474, 782, 860, 1299, 1692, 2046
FspBI CTAG 8 cut(s) 726, 851, 1329, 1541, 1872, 1940, 2033, 2256
GlaI GCGC 1 cut(s) 906
GluI GCNGC 8 cut(s) 270, 405, 474, 782, 860, 1299, 1692, 2046
GsaI CCCAGC 2 cut(s) 1149, 1571
GsuI CTGGAG 2 cut(s) 1644, 2157
HaeII RGCGCY 1 cut(s) 908
HaeIII GGCC 4 cut(s) 438, 633, 1090, 1563
HapII CCGG 6 cut(s) 7, 21, 672, 732, 1703, 1960
HgaI GACGC 4 cut(s) 275, 512, 1304, 1853
HhaI GCGC 1 cut(s) 907
Hin1II CATG 8 cut(s) 251, 330, 608, 915, 935, 1259, 1779, 1911
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 2 cut(s) 62, 1891
HpaII CCGG 6 cut(s) 7, 21, 672, 732, 1703, 1960
HphI GGTGA 4 cut(s) 271, 293, 474, 1232
Hpy166II GTNNAC 9 cut(s) 188, 253, 262, 612, 1005, 1419, 1800, 1955, 1975
Hpy188I TCNGA 5 cut(s) 310, 343, 379, 826, 2229
Hpy8I GTNNAC 9 cut(s) 188, 253, 262, 612, 1005, 1419, 1800, 1955, 1975
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 7 cut(s) 232, 1147, 1178, 1752, 1813, 1907, 2145
HpyCH4IV ACGT 2 cut(s) 712, 1992
HpyF10VI GCNNNNNNNGC 7 cut(s) 30, 117, 275, 404, 757, 807, 2042
HpySE526I ACGT 2 cut(s) 712, 1992
Hsp92II CATG 8 cut(s) 251, 330, 608, 915, 935, 1259, 1779, 1911
HspAI GCGC 1 cut(s) 905
KflI GGGWCCC 1 cut(s) 721
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 6 cut(s) 151, 847, 1699, 1962, 2145, 2224
LmnI GCTCC 2 cut(s) 1139, 1213
Lsp1109I GCAGC 7 cut(s) 256, 460, 768, 871, 1310, 1678, 2057
LweI GCATC 8 cut(s) 73, 205, 437, 669, 1430, 1676, 1912, 2032
MaeI CTAG 8 cut(s) 726, 851, 1329, 1541, 1872, 1940, 2033, 2256
MaeII ACGT 2 cut(s) 712, 1992
MaeIII GTNAC 8 cut(s) 385, 480, 487, 544, 1571, 1933, 1981, 2097
MalI GATC 6 cut(s) 153, 849, 1701, 1964, 2147, 2226
MboI GATC 6 cut(s) 151, 847, 1699, 1962, 2145, 2224
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 4 cut(s) 847, 1962, 2145, 2224
MhlI GDGCHC 3 cut(s) 290, 1007, 1957
MluCI AATT 8 cut(s) 115, 621, 1020, 1028, 1150, 1281, 1886, 1987
MlyI GAGTC 8 cut(s) 251, 355, 357, 650, 785, 1064, 1114, 1456
MmeI TCCRAC 1 cut(s) 2004
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 3 cut(s) 733, 1360, 1823
MseI TTAA 9 cut(s) 77, 554, 1161, 1286, 1503, 1536, 1889, 1967, 2111
MslI CAYNNNNRTG 4 cut(s) 876, 1834, 1908, 2206
MspA1I CMGCKG 1 cut(s) 1301
MspCI CTTAAG 1 cut(s) 1966
MspI CCGG 6 cut(s) 7, 21, 672, 732, 1703, 1960
MspR9I CCNGG 4 cut(s) 8, 1233, 1960, 2162
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 2 cut(s) 373, 1404
MvaI CCWGG 2 cut(s) 1233, 2162
MwoI GCNNNNNNNGC 7 cut(s) 30, 117, 275, 404, 757, 807, 2042
NaeI GCCGGC 1 cut(s) 22
NciI CCSGG 2 cut(s) 8, 1960
NcoI CCATGG 1 cut(s) 1775
NdeI CATATG 1 cut(s) 2203
NdeII GATC 6 cut(s) 151, 847, 1699, 1962, 2145, 2224
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 8 cut(s) 251, 330, 608, 915, 935, 1259, 1779, 1911
NlaIV GGNNCC 4 cut(s) 722, 723, 1135, 1215
NmuCI GTSAC 2 cut(s) 480, 1571
NspI RCATGY 1 cut(s) 915
PaeI GCATGC 1 cut(s) 915
PaqCI CACCTGC 1 cut(s) 1918
PceI AGGCCT 1 cut(s) 1563
PctI GAATGC 2 cut(s) 373, 1404
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 3 cut(s) 733, 1360, 1823
PfeI GAWTC 3 cut(s) 827, 893, 2230
PflFI GACNNNGTC 1 cut(s) 1847
PflMI CCANNNNNTGG 1 cut(s) 605
PinAI ACCGGT 1 cut(s) 731
PkrI GCNGC 8 cut(s) 271, 406, 475, 783, 861, 1300, 1693, 2047
PleI GAGTC 8 cut(s) 250, 355, 356, 649, 785, 1064, 1113, 1456
PpsI GAGTC 8 cut(s) 250, 355, 356, 649, 785, 1064, 1113, 1456
Ppu21I YACGTR 1 cut(s) 713
PpuMI RGGWCCY 1 cut(s) 721
PshBI ATTAAT 1 cut(s) 1536
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 1231, 2160
PspEI GGTNACC 1 cut(s) 1981
PspFI CCCAGC 2 cut(s) 1145, 1567
PspGI CCWGG 2 cut(s) 1231, 2160
PspN4I GGNNCC 4 cut(s) 722, 723, 1135, 1215
PspPI GGNCC 4 cut(s) 539, 721, 1772, 2008
PspPPI RGGWCCY 1 cut(s) 721
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
PstNI CAGNNNCTG 3 cut(s) 896, 1202, 2077
PsuI RGATCY 4 cut(s) 847, 1962, 2145, 2224
PsyI GACNNNGTC 1 cut(s) 1847
PvuII CAGCTG 1 cut(s) 1301
RsaI GTAC 6 cut(s) 187, 355, 611, 1101, 1452, 2196
RsaNI GTAC 6 cut(s) 186, 354, 610, 1100, 1451, 2195
RseI CAYNNNNRTG 4 cut(s) 876, 1834, 1908, 2206
SaqAI TTAA 9 cut(s) 77, 554, 1161, 1286, 1503, 1536, 1889, 1967, 2111
SatI GCNGC 8 cut(s) 270, 405, 474, 782, 860, 1299, 1692, 2046
Sau3AI GATC 6 cut(s) 151, 847, 1699, 1962, 2145, 2224
Sau96I GGNCC 4 cut(s) 539, 721, 1772, 2008
SchI GAGTC 8 cut(s) 251, 355, 357, 650, 785, 1064, 1114, 1456
ScrFI CCNGG 4 cut(s) 8, 1233, 1960, 2162
SduI GDGCHC 3 cut(s) 290, 1007, 1957
SfaNI GCATC 8 cut(s) 73, 205, 437, 669, 1430, 1676, 1912, 2032
SfcI CTRYAG 4 cut(s) 1065, 1077, 2239, 2250
SinI GGWCC 4 cut(s) 539, 721, 1772, 2008
SmiMI CAYNNNNRTG 4 cut(s) 876, 1834, 1908, 2206
SmlI CTYRAG 3 cut(s) 191, 1764, 1966
SmoI CTYRAG 3 cut(s) 191, 1764, 1966
SphI GCATGC 1 cut(s) 915
Sse9I AATT 8 cut(s) 115, 621, 1020, 1028, 1150, 1281, 1886, 1987
SseBI AGGCCT 1 cut(s) 1563
SsiI CCGC 4 cut(s) 33, 404, 881, 942
SspMI CTAG 8 cut(s) 726, 851, 1329, 1541, 1872, 1940, 2033, 2256
StuI AGGCCT 1 cut(s) 1563
StyD4I CCNGG 4 cut(s) 6, 1231, 1958, 2160
StyI CCWWGG 4 cut(s) 439, 1290, 1775, 2117
TaiI ACGT 2 cut(s) 715, 1995
TaqI TCGA 1 cut(s) 1719
TasI AATT 8 cut(s) 115, 621, 1020, 1028, 1150, 1281, 1886, 1987
TatI WGTACW 2 cut(s) 1099, 1450
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 3 cut(s) 827, 893, 2230
Tru1I TTAA 9 cut(s) 77, 554, 1161, 1286, 1503, 1536, 1889, 1967, 2111
Tru9I TTAA 9 cut(s) 77, 554, 1161, 1286, 1503, 1536, 1889, 1967, 2111
TscAI CASTG 5 cut(s) 175, 1314, 1560, 1580, 2082
TseFI GTSAC 2 cut(s) 480, 1571
TseI GCWGC 7 cut(s) 269, 473, 781, 859, 1298, 1691, 2045
Tsp45I GTSAC 2 cut(s) 480, 1571
TspDTI ATGAA 6 cut(s) 525, 677, 761, 860, 1353, 1908
TspGWI ACGGA 3 cut(s) 356, 1720, 2010
TspRI CASTG 5 cut(s) 175, 1314, 1560, 1580, 2082
Tth111I GACNNNGTC 1 cut(s) 1847
Van91I CCANNNNNTGG 1 cut(s) 605
Vha464I CTTAAG 1 cut(s) 1966
VneI GTGCAC 2 cut(s) 1003, 1953
VpaK11BI GGWCC 4 cut(s) 539, 721, 1772, 2008
VspI ATTAAT 1 cut(s) 1536
XapI RAATTY 2 cut(s) 1150, 1281
XceI RCATGY 1 cut(s) 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 1993
XmnI GAANNNNTTC 3 cut(s) 733, 1360, 1823
XspI CTAG 8 cut(s) 726, 851, 1329, 1541, 1872, 1940, 2033, 2256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.