AT3G05936

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015481
Physical Location & Seq
Reverse (-)
1773812 .. 1774594
783 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05936.1

Sequence Viewer

Length: 342 bp
ATGTTGCAGATTGTAGGCAAGTACCGGTGGAGACAATCTTATCGGTACAAGAAGCTAACTGATCATGGCGAGAGATTGACAACACCACCACCAGAAAGAACAACGAGGTCGCCGACCAAAAGACAGAACTTGGGGAAGAAGAACGAGACTCGAGCAAAAGGGTTCAGAGTAAATCGATCAAGGAAGCTGGTTCTTAAGGCACTAGCTTTGCCAAGAAGGATCTTTAACATTTATATGCGCATCACAAATCAGATGAACAAAGAAGGTTTATATCCTAATCTTGTTTTCTCTTCTCATTGGGGTTTCCCTGGTTTGCTGAATTCAAGAGGTGGATTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.39

Weight (kDa)

11.69

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05936 AT3G05936
malus_domestica MD04G1183700.v1.1
prunus_persica Prupe.6G302200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459041
rosa_laevigata RLG00000025124
rosa_multiflora Rmu_sc0004343.1_g000015 Rmu_sc0006910.1_g000003 Rmu_sc0033812.1_g000004
rosa_roxburghii Rroxscaffold_6G00420560
rosa_rugosa Rorug03G0033100
rosa_samantha Rh3AG091000 Rh3BG093900 Rh3CG094500 Rh3DG094500
rosa_wichuraiana Rw3G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 239
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 2 cut(s) 23, 47
AflII CTTAAG 1 cut(s) 194
AgeI ACCGGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 324
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 3 cut(s) 55, 187, 206
AluI AGCT 3 cut(s) 55, 187, 206
Alw26I GTCTC 2 cut(s) 25, 140
AlwI GGATC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 150
ApoI RAATTY 1 cut(s) 319
AsiGI ACCGGT 1 cut(s) 24
AspLEI GCGC 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 25, 140
BfaI CTAG 1 cut(s) 203
BfrI CTTAAG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 307
BsaWI WCCGGW 1 cut(s) 24
Bse118I RCCGGY 1 cut(s) 24
BseBI CCWGG 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 307
BshTI ACCGGT 1 cut(s) 24
BshVI ATCGAT 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 25, 140
BsoBI CYCGRG 1 cut(s) 150
Bsp143I GATC 3 cut(s) 61, 176, 219
BspDI ATCGAT 1 cut(s) 175
BspPI GGATC 1 cut(s) 227
BspTI CTTAAG 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 3 cut(s) 61, 176, 219
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 295
BstAFI CTTAAG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 3 cut(s) 64, 179, 222
BstMAI GTCTC 2 cut(s) 25, 140
BstMBI GATC 3 cut(s) 61, 176, 219
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 175
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 175
Csp6I GTAC 2 cut(s) 22, 46
CspAI ACCGGT 1 cut(s) 24
CviAII CATG 1 cut(s) 65
CviJI RGCY 3 cut(s) 55, 187, 206
CviKI_1 RGCY 3 cut(s) 55, 187, 206
CviQI GTAC 2 cut(s) 22, 46
DpnI GATC 3 cut(s) 63, 178, 221
DpnII GATC 3 cut(s) 61, 176, 219
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 68
FaiI YATR 4 cut(s) 66, 234, 236, 271
FatI CATG 1 cut(s) 64
FbaI TGATCA 1 cut(s) 61
FspAI RTGCGCAY 1 cut(s) 239
FspBI CTAG 1 cut(s) 203
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 1 cut(s) 239
HapII CCGG 1 cut(s) 25
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 2 cut(s) 148, 333
HpaII CCGG 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 167, 252
Hpy188III TCNNGA 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 210, 257
HpyCH4V TGCA 1 cut(s) 7
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 61, 176, 219
LpnPI CCDG 5 cut(s) 38, 105, 173, 294, 321
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 203
MalI GATC 3 cut(s) 63, 178, 221
MboI GATC 3 cut(s) 61, 176, 219
MboII GAAGA 3 cut(s) 148, 151, 282
MflI RGATCY 1 cut(s) 219
MluCI AATT 1 cut(s) 319
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 2 cut(s) 99, 320
MseI TTAA 2 cut(s) 195, 225
MslI CAYNNNNRTG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
NdeII GATC 3 cut(s) 61, 176, 219
NlaIII CATG 1 cut(s) 68
NsbI TGCGCA 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 1 cut(s) 333
PinAI ACCGGT 1 cut(s) 24
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspXI VCTCGAGB 1 cut(s) 150
PsuI RGATCY 1 cut(s) 219
RsaI GTAC 2 cut(s) 23, 47
RsaNI GTAC 2 cut(s) 22, 46
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 2 cut(s) 195, 225
Sau3AI GATC 3 cut(s) 61, 176, 219
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 309
SetI ASST 6 cut(s) 57, 110, 189, 208, 268, 331
SfaNI GCATC 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 150, 194
SmoI CTYRAG 2 cut(s) 150, 194
Sse9I AATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 307
TaqI TCGA 2 cut(s) 151, 175
TasI AATT 1 cut(s) 319
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 2 cut(s) 195, 225
Tru9I TTAA 2 cut(s) 195, 225
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 194
XapI RAATTY 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 150
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.