Prupe.6G302200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015481
Physical Location & Seq
Forward (+)
27418454 .. 27418977
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G302200.1

Sequence Viewer

Length: 480 bp
TTAGCCCCCACTAGTTCTTCCCCTTTATATATTTGTAACACACAGCAATACCAAAAGTCCTACAATCTCACCTCCTTTCTGCTTCTCCTATCTTCTTGGTCCTCAGTGCAGCAGATGGGTTTCCAGGACATTGTTGGGGGAAGGTTGGGATGTCAATATGAGAAGCTAACCAAAAGGAATGAAAAGGTGGGAAGGCCTGGAAGGCATTGGGTGAAGAAAATGAATGGAAGACTGAAGGGTCTGCGGTTATCGCGCTCCCGGAAGCTTACTTTGAAGATTTTTTCTGCAGTTGTATGGCATAGCAGGTTTGCAAGGATATGCAGTGACATTGTGAACAGAATGAAAGCTGATGGAGCATATCCCAGTATTATCTTCTCTACTCAATGGGGGCTTCCAGTTCTGTCTCATTCATCTGTCAGGGGCTGCAGCATCAAATGCAGTCCCAATATTGTACCACCAATTAGGAACTGTATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.98

Weight (kDa)

10.48

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05936 AT3G05936
malus_domestica MD04G1183700.v1.1
prunus_persica Prupe.6G302200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459041
rosa_laevigata RLG00000025124
rosa_multiflora Rmu_sc0004343.1_g000015 Rmu_sc0006910.1_g000003 Rmu_sc0033812.1_g000004
rosa_roxburghii Rroxscaffold_6G00420560
rosa_rugosa Rorug03G0033100
rosa_samantha Rh3AG091000 Rh3BG093900 Rh3CG094500 Rh3DG094500
rosa_wichuraiana Rw3G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 294
AccII CGCG 1 cut(s) 253
AciI CCGC 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 1 cut(s) 453
AgsI TTSAA 1 cut(s) 274
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 123, 196
AluBI AGCT 3 cut(s) 166, 265, 347
AluI AGCT 3 cut(s) 166, 265, 347
Alw26I GTCTC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 423
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 109, 423, 426
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 61, 223
AvaII GGWCC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 235
BbvI GCAGC 3 cut(s) 121, 410, 438
BccI CCATC 2 cut(s) 109, 344
BciT130I CCWGG 2 cut(s) 125, 198
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 408
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 2 cut(s) 285, 424
BfuAI ACCTGC 1 cut(s) 294
BglI GCCNNNNNGGC 1 cut(s) 202
BisI GCNGC 3 cut(s) 110, 424, 427
BlsI GCNGC 3 cut(s) 111, 425, 428
Bme1390I CCNGG 3 cut(s) 125, 198, 259
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmrFI CCNGG 3 cut(s) 125, 198, 259
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 438
BmuI ACTGGG 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 363, 395
BseBI CCWGG 2 cut(s) 125, 198
BseGI GGATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 363, 395
BseXI GCAGC 3 cut(s) 121, 410, 438
BsgI GTGCAG 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 1 cut(s) 196
BspACI CCGC 1 cut(s) 244
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 1 cut(s) 253
BspMAI CTGCAG 2 cut(s) 289, 428
BspMI ACCTGC 1 cut(s) 294
BsrI ACTGG 2 cut(s) 363, 395
Bst2UI CCWGG 2 cut(s) 125, 198
Bst4CI ACNGT 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 435
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 155
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 408
BstMWI GCNNNNNNNGC 4 cut(s) 202, 250, 353, 435
BstNI CCWGG 2 cut(s) 125, 198
BstSCI CCNGG 3 cut(s) 123, 196, 257
BstSFI CTRYAG 2 cut(s) 285, 424
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 121, 410, 438
BstV2I GAAGAC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 111, 328
BveI ACCTGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 423
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 452
CviJI RGCY 7 cut(s) 5, 166, 196, 265, 347, 391, 423
CviKI_1 RGCY 7 cut(s) 5, 166, 196, 265, 347, 391, 423
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 237
DseDI GACNNNNNNGTC 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 254
EcoRII CCWGG 2 cut(s) 123, 196
FaiI YATR 7 cut(s) 28, 30, 159, 295, 300, 319, 358
FaqI GGGAC 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 110, 424, 427
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 110, 424, 427
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 254
GluI GCNGC 3 cut(s) 110, 424, 427
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 263
HpaII CCGG 1 cut(s) 259
HphI GGTGA 2 cut(s) 61, 223
Hpy166II GTNNAC 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 4 cut(s) 135, 186, 195, 229
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4V TGCA 6 cut(s) 109, 287, 311, 321, 426, 438
HpyF10VI GCNNNNNNNGC 4 cut(s) 202, 250, 353, 435
HpyF3I CTNAG 1 cut(s) 103
HspAI GCGC 1 cut(s) 253
LmnI GCTCC 2 cut(s) 260, 353
LpnPI CCDG 9 cut(s) 110, 137, 183, 210, 272, 289, 376, 403, 408
Lsp1109I GCAGC 3 cut(s) 121, 410, 438
LweI GCATC 1 cut(s) 438
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 35, 323
MboII GAAGA 6 cut(s) 9, 84, 226, 240, 286, 364
MluCI AATT 1 cut(s) 459
MnlI CCTC 2 cut(s) 82, 112
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 3 cut(s) 125, 198, 259
MvaI CCWGG 2 cut(s) 125, 198
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 202, 250, 353, 435
NciI CCSGG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 323
PceI AGGCCT 1 cut(s) 196
PfoI TCCNGGA 2 cut(s) 123, 257
PkrI GCNGC 3 cut(s) 111, 425, 428
Psp6I CCWGG 2 cut(s) 123, 196
PspGI CCWGG 2 cut(s) 123, 196
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 2 cut(s) 289, 428
PstNI CAGNNNCTG 1 cut(s) 423
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SatI GCNGC 3 cut(s) 110, 424, 427
Sau96I GGNCC 1 cut(s) 99
ScrFI CCNGG 3 cut(s) 125, 198, 259
SetI ASST 7 cut(s) 74, 146, 168, 189, 267, 308, 349
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 2 cut(s) 285, 424
SinI GGWCC 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 1 cut(s) 459
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 1 cut(s) 244
SspI AATATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 3 cut(s) 123, 196, 257
TaaI ACNGT 1 cut(s) 470
TasI AATT 1 cut(s) 459
TscAI CASTG 2 cut(s) 111, 328
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 3 cut(s) 109, 423, 426
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 4 cut(s) 195, 236, 356, 399
TspRI CASTG 2 cut(s) 111, 328
VpaK11BI GGWCC 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.