RLG00000025124

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
42107551 .. 42107910
360 bp
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UTR
Exon/CDS
Intron
RLM00000025124

Sequence Viewer

Length: 360 bp
ATGGGTTTTCAAGACATGGTTGGGAGAGGTTTGGGATTTCAGTATGAGAAGCTAAGCAAAAGGAATGAGAAGATGAGTAGGTCTGGAAGGCATATATGGGTGAAGAAGATGAATGGAAAGCTAAAGGGTTTTCGGCTATCCCGCTCTAGGAAGTTTACTTTGAAGGTTTTCTCTGTAGTTGTGTGGCCAAGCAGGATTGCAAGGATTTACAGTGAGGTTGTGAAGAGATTGAAAACTGATGGAGTTTATCCCAATATTATTTTCTCTACTCAATGGGGGCTTCCAGTTCTATCTCATTCATCAGTCAAATTTAGGGAGACAGTAGCAAAGGCTCCCTATGCTAGGAGCTGTATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.8

Weight (kDa)

11.1

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015481)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AciI CCGC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 147, 342
AgsI TTSAA 3 cut(s) 11, 163, 232
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 3 cut(s) 52, 121, 348
AluI AGCT 3 cut(s) 52, 121, 348
Alw26I GTCTC 1 cut(s) 311
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 112
BalI TGGCCA 1 cut(s) 187
BccI CCATC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 147, 342
BfmI CTRYAG 1 cut(s) 174
BlpI GCTNAGC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 53
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 342
Bse1I ACTGG 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 147, 342
BseNI ACTGG 1 cut(s) 284
BshFI GGCC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 147, 342
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 1 cut(s) 187
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 333
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 212, 322
Bst6I CTCTTC 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 53
BstENI CCTNNNNNAGG 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 311
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 174
BsuRI GGCC 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 217
CviAII CATG 1 cut(s) 16
CviJI RGCY 7 cut(s) 52, 121, 136, 187, 280, 332, 348
CviKI_1 RGCY 7 cut(s) 52, 121, 136, 187, 280, 332, 348
DdeI CTNAG 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 340
FaeI CATG 1 cut(s) 19
FaiI YATR 6 cut(s) 17, 45, 93, 95, 97, 339
FatI CATG 1 cut(s) 15
FauI CCCGC 1 cut(s) 149
FspBI CTAG 2 cut(s) 147, 342
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 1 cut(s) 19
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 11, 84
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 81, 157
HpyCH4III ACNGT 2 cut(s) 212, 322
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 19
LmnI GCTCC 2 cut(s) 337, 345
LpnPI CCDG 3 cut(s) 69, 178, 297
MaeI CTAG 2 cut(s) 147, 342
MbiI CCGCTC 1 cut(s) 144
MboII GAAGA 4 cut(s) 82, 115, 118, 235
MlsI TGGCCA 1 cut(s) 187
MluCI AATT 1 cut(s) 308
MluNI TGGCCA 1 cut(s) 187
MnlI CCTC 2 cut(s) 20, 208
Mox20I TGGCCA 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 338
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 333
SetI ASST 7 cut(s) 31, 54, 83, 123, 168, 219, 350
SfcI CTRYAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 308
SsiI CCGC 1 cut(s) 142
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 147, 342
TaaI ACNGT 2 cut(s) 212, 322
TasI AATT 1 cut(s) 308
TscAI CASTG 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 125, 288
TspRI CASTG 1 cut(s) 217
XagI CCTNNNNNAGG 1 cut(s) 340
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 2 cut(s) 147, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.