Rorug03G0033100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015481
Physical Location & Seq
Forward (+)
2651696 .. 2652136
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0033100.1

Sequence Viewer

Length: 441 bp
ATGTCAGTGATTTTGTGCCCTTTGATATCTCTAGACCTCAGTGATTGCCAATTGTTAAAAGAAATCCCTGATGGCCTCATTAGCTTAACCTCATTGCAAAGGCTAAATCTAAGTGGAACCATGATTCGGACCATCAATCCAACAATCAAACATGCGTCTGGGCTCAAGTATCTGAACATAAGTAACTGCAAGCGCCTTCAATCTTTGCCAGAGCTCCCATGTCTTCCCACTTTGGCGGCAAATGGCTGCCCGACACTGAAGACGGTGTCATATCCAATGACTGCACCCACACAAGATTTGATTCAGAGCCATTCATTTTGTGCTTCTATAAATTTGGATGAGAATACAAGAAGCAACATGATGGATGATGCCCGGCTCAGAATTGTGCGAATGGCAACTGTATCTCTCTCTCTCACAGATACACACAGAGAGTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.07

Weight (kDa)

7.62

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 10 - 63 2.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015481)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05936 AT3G05936
malus_domestica MD04G1183700.v1.1
prunus_persica Prupe.6G302200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459041
rosa_laevigata RLG00000025124
rosa_multiflora Rmu_sc0004343.1_g000015 Rmu_sc0006910.1_g000003 Rmu_sc0033812.1_g000004
rosa_roxburghii Rroxscaffold_6G00420560
rosa_rugosa Rorug03G0033100
rosa_samantha Rh3AG091000 Rh3BG093900 Rh3CG094500 Rh3DG094500
rosa_wichuraiana Rw3G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 2 cut(s) 84, 214
AluI AGCT 2 cut(s) 84, 214
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 331
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 373
AvaII GGWCC 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 20
BanII GRGCYC 2 cut(s) 165, 216
BbsI GAAGAC 2 cut(s) 215, 266
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 233
BccI CCATC 3 cut(s) 65, 140, 355
BcnI CCSGG 1 cut(s) 373
BfaI CTAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 196
BisI GCNGC 2 cut(s) 237, 247
BlsI GCNGC 2 cut(s) 238, 248
Bme1390I CCNGG 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 2 cut(s) 215, 266
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 92
BseGI GGATG 2 cut(s) 343, 370
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 2 cut(s) 52, 391
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 126
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 3 cut(s) 20, 165, 216
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 2 cut(s) 51, 390
BspLI GGNNCC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 265, 400
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 4 cut(s) 38, 110, 377, 435
BstF5I GGATG 2 cut(s) 343, 370
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 371
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 2 cut(s) 215, 266
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 2 cut(s) 343, 370
BtsIMutI CAGTG 3 cut(s) 12, 46, 254
Cac8I GCNNGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 129
CseI GACGC 1 cut(s) 144
CviAII CATG 4 cut(s) 121, 152, 219, 358
CviJI RGCY 8 cut(s) 75, 84, 103, 163, 214, 246, 309, 376
CviKI_1 RGCY 8 cut(s) 75, 84, 103, 163, 214, 246, 309, 376
DdeI CTNAG 4 cut(s) 38, 110, 377, 435
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 165, 216
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 214
EcoRV GATATC 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 165, 216
FaeI CATG 4 cut(s) 124, 155, 222, 361
FaiI YATR 7 cut(s) 122, 153, 179, 220, 271, 329, 359
FatI CATG 4 cut(s) 120, 151, 218, 357
Fnu4HI GCNGC 2 cut(s) 237, 247
FokI GGATG 2 cut(s) 350, 377
FriOI GRGCYC 2 cut(s) 165, 216
Fsp4HI GCNGC 2 cut(s) 237, 247
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 237, 247
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 373
HgaI GACGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 195
Hin1II CATG 4 cut(s) 124, 155, 222, 361
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 3 cut(s) 124, 301, 431
HpaII CCGG 1 cut(s) 373
Hpy188I TCNGA 4 cut(s) 129, 174, 306, 380
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 265, 400
HpyCH4V TGCA 3 cut(s) 97, 189, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 4 cut(s) 38, 110, 377, 435
Hsp92II CATG 4 cut(s) 124, 155, 222, 361
HspAI GCGC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 81, 144, 222, 386
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 358
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 2 cut(s) 215, 271
MfeI CAATTG 1 cut(s) 50
MhlI GDGCHC 3 cut(s) 20, 165, 216
MluCI AATT 3 cut(s) 50, 331, 381
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 3 cut(s) 47, 86, 100
MseI TTAA 2 cut(s) 56, 86
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 1 cut(s) 373
MunI CAATTG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 373
NlaIII CATG 4 cut(s) 124, 155, 222, 361
NlaIV GGNNCC 1 cut(s) 118
NspI RCATGY 1 cut(s) 155
PfeI GAWTC 2 cut(s) 124, 301
PflFI GACNNNGTC 1 cut(s) 265
PkrI GCNGC 2 cut(s) 238, 248
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 129
PsyI GACNNNGTC 1 cut(s) 265
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 56, 86
SatI GCNGC 2 cut(s) 237, 247
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 3 cut(s) 20, 165, 216
SetI ASST 4 cut(s) 39, 86, 92, 216
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 50, 331, 381
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 2 cut(s) 265, 400
TasI AATT 3 cut(s) 50, 331, 381
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 2 cut(s) 124, 301
Tru1I TTAA 2 cut(s) 56, 86
Tru9I TTAA 2 cut(s) 56, 86
TscAI CASTG 3 cut(s) 12, 46, 261
TseI GCWGC 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 3 cut(s) 12, 46, 261
Tth111I GACNNNGTC 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 129
XapI RAATTY 1 cut(s) 331
XbaI TCTAGA 1 cut(s) 31
XceI RCATGY 1 cut(s) 155
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.