AT3G06320

ribosomal protein L33 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015174
Physical Location & Seq
Forward (+)
1914506 .. 1915375
870 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06320.1

Sequence Viewer

Length: 177 bp
ATGGGAGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAACTGGATTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCCGTAAGTACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L33

Protein Analysis

58

Amino Acids

6.96

Weight (kDa)

10.64

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L33 PF00471 12 - 56 1.2e-11 Ribosomal protein L33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06320 AT5G18790
fragaria_vesca FvH4_4g16940 FvH4_4g16940
malus_domestica MD10G1048100.v1.1 MD16G1177300.v1.1
prunus_persica Prupe.1G144200_v2.0.a1 Prupe.1G144200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0420521 RchiOBHm_Chr7g0218551
rosa_laevigata RLG00000007754
rosa_roxburghii Rroxscaffold_5G00363140
rosa_samantha Rh4BG228900 Rh7DG318600
rosa_wichuraiana Rw4G019530 Rw7G027220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AfaI GTAC 2 cut(s) 88, 125
AluBI AGCT 2 cut(s) 53, 109
AluI AGCT 2 cut(s) 53, 109
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 2 cut(s) 110, 132
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 23
AvaI CYCGRG 2 cut(s) 110, 132
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 62
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmeT110I CYCGRG 2 cut(s) 110, 132
BpiI GAAGAC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 62
BsiHKCI CYCGRG 2 cut(s) 110, 132
BslFI GGGAC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 108
BsoBI CYCGRG 2 cut(s) 110, 132
Bsp143I GATC 1 cut(s) 127
BspPI GGATC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 77
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 53
Csp6I GTAC 2 cut(s) 87, 124
CviAII CATG 2 cut(s) 28, 146
CviJI RGCY 2 cut(s) 53, 109
CviKI_1 RGCY 2 cut(s) 53, 109
CviQI GTAC 2 cut(s) 87, 124
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 90
Eco88I CYCGRG 2 cut(s) 110, 132
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 31, 149
FaiI YATR 3 cut(s) 29, 72, 147
FaqI GGGAC 1 cut(s) 108
FatI CATG 2 cut(s) 27, 145
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 31, 149
HinfI GANTC 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 76, 101
HpyCH4IV ACGT 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 2 cut(s) 31, 149
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 2 cut(s) 39, 45
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 23
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 4 cut(s) 28, 31, 58, 94
MnlI CCTC 4 cut(s) 6, 72, 141, 161
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 53
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 31, 149
PaeR7I CTCGAG 2 cut(s) 110, 132
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 1 cut(s) 52
PspXI VCTCGAGB 2 cut(s) 110, 132
PstNI CAGNNNCTG 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 88, 125
RsaNI GTAC 2 cut(s) 87, 124
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 127
SetI ASST 3 cut(s) 26, 55, 111
Sfr274I CTCGAG 2 cut(s) 110, 132
SlaI CTCGAG 2 cut(s) 110, 132
SmlI CTYRAG 3 cut(s) 101, 110, 132
SmoI CTYRAG 3 cut(s) 101, 110, 132
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 111, 133
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 16, 22
TspGWI ACGGA 2 cut(s) 26, 107
XhoI CTCGAG 2 cut(s) 110, 132
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.