Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015174

Physical Location & Seq

Genomic Coordinates Reverse (-)

37819612 .. 37820297

Gene Structure 686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG318600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGGTGACAAGAAGAAGAAGAAGGCTACTATGCTCATCCGACTTGTGTCATCTGCTAGGACTGGATATTTCTATGTCACCAAGAAGCCGTCCGGGATGACAGAAAAACTTGAGTTGCGAAAATATGATCCTCGGGTAAAACTTCATGTTCTATTTACTGAGGCCAAATTGAAAATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019866 GO:0022411 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0070126 GO:0071704 GO:0071840 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L33

Protein Analysis

60

Amino Acids

7.0

Weight (kDa)

10.33

Isoelectric Point (pI)

17.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L33	PF00471	12 - 56	2.7e-12	Ribosomal protein L33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06320 AT5G18790
fragaria_vesca	FvH4_4g16940 FvH4_4g16940
malus_domestica	MD10G1048100.v1.1 MD16G1177300.v1.1
prunus_persica	Prupe.1G144200_v2.0.a1 Prupe.1G144200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0420521 RchiOBHm_Chr7g0218551
rosa_laevigata	RLG00000007754
rosa_roxburghii	Rroxscaffold_5G00363140
rosa_samantha	Rh4BG228900 Rh7DG318600
rosa_wichuraiana	Rw4G019530 Rw7G027220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	172
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	17, 70
AvaI	CYCGRG	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	94
BoxI	GACNNNNGTC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	36, 102
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	93
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	151
BspPI	GGATC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	36, 102
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	36, 102
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	3 cut(s)	26, 88, 164
CviKI_1	RGCY	3 cut(s)	26, 88, 164
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	132
FaeI	CATG	1 cut(s)	149
FaiI	YATR	4 cut(s)	32, 75, 126, 147
FatI	CATG	1 cut(s)	145
FokI	GGATG	2 cut(s)	23, 109
FspBI	CTAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	149
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	17, 70
Hpy188I	TCNGA	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	2 cut(s)	48, 106
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	5, 76
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	3 cut(s)	25, 28, 31
MluCI	AATT	2 cut(s)	167, 174
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	141, 154
MseI	TTAA	1 cut(s)	177
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	149
NmuCI	GTSAC	2 cut(s)	5, 76
PfoI	TCCNGGA	1 cut(s)	92
PshAI	GACNNNNGTC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	167, 174
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	92
TasI	AATT	2 cut(s)	167, 174
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	2 cut(s)	5, 76
Tsp45I	GTSAC	2 cut(s)	5, 76
TspDTI	ATGAA	1 cut(s)	134
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.