MD16G1177300.v1.1

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015174
Physical Location & Seq
Reverse (-)
15080852 .. 15082144
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1177300.v1.1.491

Sequence Viewer

Length: 174 bp
ATGGGTGAAAAGAAGAAGAAGGCTACCTTGTTCATCCGACTTATCTCAGCAGCTGGGACTGGATTTTTCTATGTCAAGAAGAAGCCGAGTAGGGTGCAAGAGAAGCTTGAGTTTCGGAAATTTGACCCTCGGGTAAATCATCATGTTCTATTTACTGAGGCAAAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L33

Protein Analysis

58

Amino Acids

6.71

Weight (kDa)

10.46

Isoelectric Point (pI)

28.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L33 PF00471 12 - 55 1.3e-10 Ribosomal protein L33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06320 AT5G18790
fragaria_vesca FvH4_4g16940 FvH4_4g16940
malus_domestica MD10G1048100.v1.1 MD16G1177300.v1.1
prunus_persica Prupe.1G144200_v2.0.a1 Prupe.1G144200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0420521 RchiOBHm_Chr7g0218551
rosa_laevigata RLG00000007754
rosa_roxburghii Rroxscaffold_5G00363140
rosa_samantha Rh4BG228900 Rh7DG318600
rosa_wichuraiana Rw4G019530 Rw7G027220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 119
AluBI AGCT 2 cut(s) 53, 106
AluI AGCT 2 cut(s) 53, 106
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 129
BbvI GCAGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 60, 147
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 129
BspCNI CTCAG 2 cut(s) 59, 148
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 46, 156
BstF5I GGATG 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 53
CviAII CATG 1 cut(s) 143
CviJI RGCY 4 cut(s) 23, 53, 85, 106
CviKI_1 RGCY 4 cut(s) 23, 53, 85, 106
DdeI CTNAG 2 cut(s) 46, 156
Eco88I CYCGRG 1 cut(s) 129
FaeI CATG 1 cut(s) 146
FaiI YATR 2 cut(s) 72, 144
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 90, 122
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 104
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 38, 117
Hpy188III TCNNGA 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 46, 156
Hsp92II CATG 1 cut(s) 146
LpnPI CCDG 2 cut(s) 39, 45
Lsp1109I GCAGC 1 cut(s) 62
MboII GAAGA 3 cut(s) 25, 28, 91
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 2 cut(s) 138, 151
MspA1I CMGCKG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 146
NmeAIII GCCGAG 1 cut(s) 111
PkrI GCNGC 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 53
SatI GCNGC 1 cut(s) 51
SetI ASST 3 cut(s) 29, 55, 108
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 119
TasI AATT 1 cut(s) 119
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 22
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.