RLG00000007754

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015174
Physical Location & Seq
Reverse (-)
20674994 .. 20677042
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007754

Sequence Viewer

Length: 318 bp
ATGGGCTACGTCCCCAAAACTCTGCGTTTTGTGCCGTTTCGGTTTGTTTCTCTTCTTTTTCAGCTCCCCTCAGACGAAATCAAGGCTCCATTTTTAGGCCCCCTCCTCCTCCAAGACTGTAGCAACTTGCAAAGCTTGAACACAATGGGCGACAAGAAGAAGAAGGCTACGTTGTTCATCCGACTTGTCTCAGCTGCTGGAACTGGATTTTTCTATGTCAAGAAGAAGCCTTCTAGGATGGTAGAGAAGCTTGAGTTCCGAAAATTTGACCCACGGGTGAATCGCCATGTTCTATTTACTGAGGCAAAAATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L33

Protein Analysis

106

Amino Acids

12.14

Weight (kDa)

10.29

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L33 PF00471 60 - 103 3.1e-10 Ribosomal protein L33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06320 AT5G18790
fragaria_vesca FvH4_4g16940 FvH4_4g16940
malus_domestica MD10G1048100.v1.1 MD16G1177300.v1.1
prunus_persica Prupe.1G144200_v2.0.a1 Prupe.1G144200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0420521 RchiOBHm_Chr7g0218551
rosa_laevigata RLG00000007754
rosa_roxburghii Rroxscaffold_5G00363140
rosa_samantha Rh4BG228900 Rh7DG318600
rosa_wichuraiana Rw4G019530 Rw7G027220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 4 cut(s) 64, 135, 194, 250
AluI AGCT 4 cut(s) 64, 135, 194, 250
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 289
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 118
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 87, 100
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 177, 243
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 3 cut(s) 84, 204, 291
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 2 cut(s) 95, 98
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 193
BsnI GGCC 1 cut(s) 99
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 3 cut(s) 83, 203, 292
BspLI GGNNCC 2 cut(s) 87, 100
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 70, 190, 300
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 177, 243
BstMAI GTCTC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 177, 243
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 98
CviAII CATG 1 cut(s) 287
CviJI RGCY 9 cut(s) 6, 64, 86, 99, 135, 167, 194, 229, 250
CviKI_1 RGCY 9 cut(s) 6, 64, 86, 99, 135, 167, 194, 229, 250
DdeI CTNAG 3 cut(s) 70, 190, 300
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 98
FaeI CATG 1 cut(s) 290
FaiI YATR 2 cut(s) 216, 288
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 2 cut(s) 164, 250
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 99
Hin1II CATG 1 cut(s) 290
HindIII AAGCTT 2 cut(s) 133, 248
HinfI GANTC 1 cut(s) 280
HphI GGTGA 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 73, 182, 260
Hpy188III TCNNGA 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 157, 240
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 2 cut(s) 9, 170
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 3 cut(s) 70, 190, 300
HpySE526I ACGT 2 cut(s) 9, 170
Hsp92II CATG 1 cut(s) 290
LmnI GCTCC 2 cut(s) 69, 91
LpnPI CCDG 2 cut(s) 183, 189
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 1 cut(s) 234
MaeII ACGT 2 cut(s) 9, 170
MboII GAAGA 4 cut(s) 44, 169, 172, 235
MluCI AATT 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 5 cut(s) 79, 113, 116, 119, 295
MspA1I CMGCKG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 2 cut(s) 87, 100
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 87, 100
PspPI GGNCC 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 194
SatI GCNGC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 98
SetI ASST 6 cut(s) 12, 66, 137, 173, 196, 252
SfcI CTRYAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 263
SspMI CTAG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 2 cut(s) 12, 173
TasI AATT 1 cut(s) 263
TfiI GAWTC 1 cut(s) 280
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 166
XapI RAATTY 1 cut(s) 263
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.