AT5G18790

ribosomal protein L33 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015174
Physical Location & Seq
Reverse (-)
6266092 .. 6266927
836 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18790.1

Sequence Viewer

Length: 177 bp
ATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTCTCAGCTGCTGGAACTGGTTTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCCGTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGAAGATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L33

Protein Analysis

58

Amino Acids

6.96

Weight (kDa)

10.64

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L33 PF00471 12 - 56 1.2e-11 Ribosomal protein L33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06320 AT5G18790
fragaria_vesca FvH4_4g16940 FvH4_4g16940
malus_domestica MD10G1048100.v1.1 MD16G1177300.v1.1
prunus_persica Prupe.1G144200_v2.0.a1 Prupe.1G144200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0420521 RchiOBHm_Chr7g0218551
rosa_laevigata RLG00000007754
rosa_roxburghii Rroxscaffold_5G00363140
rosa_samantha Rh4BG228900 Rh7DG318600
rosa_wichuraiana Rw4G019530 Rw7G027220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AfaI GTAC 2 cut(s) 88, 125
AluBI AGCT 2 cut(s) 50, 109
AluI AGCT 2 cut(s) 50, 109
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 2 cut(s) 110, 132
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 23
AvaI CYCGRG 2 cut(s) 110, 132
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 49
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmeT110I CYCGRG 2 cut(s) 110, 132
BpiI GAAGAC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 60, 150
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 37
BsiHKCI CYCGRG 2 cut(s) 110, 132
BslFI GGGAC 2 cut(s) 20, 108
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 2 cut(s) 20, 108
BsoBI CYCGRG 2 cut(s) 110, 132
Bsp143I GATC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 59, 151
BspPI GGATC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 77, 158
BstDEI CTNAG 2 cut(s) 46, 159
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 53
Csp6I GTAC 2 cut(s) 87, 124
CviAII CATG 2 cut(s) 28, 146
CviJI RGCY 2 cut(s) 50, 109
CviKI_1 RGCY 2 cut(s) 50, 109
CviQI GTAC 2 cut(s) 87, 124
DdeI CTNAG 2 cut(s) 46, 159
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 77, 158
EarI CTCTTC 2 cut(s) 77, 158
Eco130I CCWWGG 1 cut(s) 90
Eco88I CYCGRG 2 cut(s) 110, 132
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 31, 149
FaiI YATR 3 cut(s) 29, 72, 147
FaqI GGGAC 2 cut(s) 20, 108
FatI CATG 2 cut(s) 27, 145
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 31, 149
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 76, 101
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 46, 159
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 2 cut(s) 31, 149
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 2 cut(s) 39, 45
Lsp1109I GCAGC 1 cut(s) 37
MaeII ACGT 1 cut(s) 23
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 5 cut(s) 28, 31, 58, 94, 145
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 4 cut(s) 6, 72, 141, 161
MroXI GAANNNNTTC 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 50
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 31, 149
PaeR7I CTCGAG 2 cut(s) 110, 132
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspXI VCTCGAGB 2 cut(s) 110, 132
PstNI CAGNNNCTG 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 2 cut(s) 88, 125
RsaNI GTAC 2 cut(s) 87, 124
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 127
SchI GAGTC 1 cut(s) 144
SetI ASST 3 cut(s) 26, 52, 111
Sfr274I CTCGAG 2 cut(s) 110, 132
SlaI CTCGAG 2 cut(s) 110, 132
SmlI CTYRAG 3 cut(s) 101, 110, 132
SmoI CTYRAG 3 cut(s) 101, 110, 132
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 111, 133
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 16, 22
TspGWI ACGGA 2 cut(s) 26, 107
TspRI CASTG 1 cut(s) 163
XhoI CTCGAG 2 cut(s) 110, 132
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.