Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015174

Physical Location & Seq

Genomic Coordinates Forward (+)

6394107 .. 6395873

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1048100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGTCATTCGACTTGTCTCATCTGCTGGCACTGGATTTTTCTACACCAAGAAGAAGCCTTTTAAGGTGAGGGAAAAGCTTGAAATCCGAAAATTCGACCCTGTTGTAAATCGTCATGTTCTGTTTACAGAGACAAAAGTGAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019866 GO:0022411 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0070126 GO:0071704 GO:0071840 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L33

Protein Analysis

50

Amino Acids

5.77

Weight (kDa)

10.51

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L33	PF00471	3 - 46	3.9e-12	Ribosomal protein L33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06320 AT5G18790
fragaria_vesca	FvH4_4g16940 FvH4_4g16940
malus_domestica	MD10G1048100.v1.1 MD16G1177300.v1.1
prunus_persica	Prupe.1G144200_v2.0.a1 Prupe.1G144200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0420521 RchiOBHm_Chr7g0218551
rosa_laevigata	RLG00000007754
rosa_roxburghii	Rroxscaffold_5G00363140
rosa_samantha	Rh4BG228900 Rh7DG318600
rosa_wichuraiana	Rw4G019530 Rw7G027220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	83
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	22, 125
ApoI	RAATTY	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	22, 125
Bse1I	ACTGG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	22, 125
BsrI	ACTGG	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	22, 125
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	28
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	2 cut(s)	58, 79
CviKI_1	RGCY	2 cut(s)	58, 79
FaeI	CATG	1 cut(s)	119
FaiI	YATR	1 cut(s)	117
FatI	CATG	1 cut(s)	115
Hin1II	CATG	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	77
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	119
LpnPI	CCDG	3 cut(s)	12, 18, 114
MboII	GAAGA	1 cut(s)	64
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	63
NlaIII	CATG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	63
SetI	ASST	2 cut(s)	69, 81
SgeI	CNNG	7 cut(s)	26, 39, 45, 61, 92, 113, 128
Sse9I	AATT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	10, 96
TasI	AATT	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	37
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.