AT3G06580

Galactokinase galactose-binding signature

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
2048900 .. 2052147
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06580.1

Sequence Viewer

Length: 1491 bp
ATGGCGAAACCGGAAGAAGTATCAGTCCCGATCTTCACATCTCTTGAGCCTGTCTACGGCGAAGGATCTCTGCTCCAAGAAGCTACACAACGATTCGATGTTTTGAAGGCCAATTTCAACGATGTCTTCGGTGCTTCTCCCCAACTCTTCGCTCGCTCTCCTGGAAGAGTGAATCTGATAGGAGAGCACATTGACTATGAAGGATACTCAGTGTTGCCGATGGCTATTCGTCAGGATACAATTATAGCGATTCGGAAATGTGAGGATCAAAAGCAGCTTCGGATTGCAAATGTTAATGATAAGTACACTATGTGTACATATCCTGCCGATCCTGACCAGGAAATTGACTTGAAGAATCACAAATGGGGGCATTACTTCATATGCGCGTACAAAGGATTTCATGAGTATGCAAAGTCAAAAGGTGTGAATCTTGGTTCACCAGTTGGACTTGATGTGCTTGTTGATGGAATTGTTCCTACAGGTTCTGGGTTGTCAAGTTCTGCTGCATTTGTTTGCTCAGCAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAGAAAGAACTTGCACAGCTTACATGTGAATGTGAAAGACACATTGGAACACAATCTGGTGGGATGGACCAGGCAATCTCTATAATGGCTAAAACTGGATTTGCTGAGCTTATTGACTTCAACCCAGTCCGCGCAACTGATGTGAAACTCCCTGATGGAGGGAGTTTTGTAATTGCACATTCTCTTGCAGAGTCGCAGAAGGCGGTCACGGCTGCTAAGAATTACAATAACAGGGTCGTTGAATGTCGACTTGCTTCGATCATACTTGGTGTTAAGCTCGGAATGGAACCAAAAGAAGCAATATCAAAAGTTAAGACTCTTTCTGATGTGGAGGGATTATGTGTGTCATTCGCTGGTGATCGTGGGTCATCTGATCCTCTTCTTGCTGTTAAGGAATATCTGAAAGAAGAACCATACACGGCTGAGGAGATTGAGAAAATCCTAGAGGAGAAATTACCATCAATCGTGAACAATGATCCAACATCTTTGGCTGTACTCAATGCTGCCACGCATTTCAAATTGCATCAGAGAGCTGCACACGTTTATTCCGAAGCCCGGAGGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAGTGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAGTTGCCCCGAGCTAGAAGAACTTGTTCAAGTTTGCAAGGAGAATGGAGCACTTGGAGCAAGACTGACCGGAGCTGGATGGGGCGGTTGCGCTGTGGCCTTGGTCAAGGAATTTGACGTTACTCAATTCATTCCAGCAGTCAAGGAGAAGTACTACAAAAAGAGAGTAGAGAAAGGAGTGGTAAAAAAAGAAGATATGGAGCTTTACCTCTTTGCCTCCAAGCCTTCAAGTGGTGCTGCCATCTTCAACCTCTAA

Protein Analysis

496

Amino Acids

54.34

Weight (kDa)

5.67

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GalKase_gal_bdg PF10509 38 - 86 1.4e-22 Galactokinase galactose-binding signature
GHMP_kinases_N PF00288 125 - 217 1.5e-16 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 391 - 464 3.3e-16 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014620)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06580
fragaria_vesca FvH4_4g20200 FvH4_4g20200
malus_domestica MD13G1150000.v1.1 MD16G1150400.v1.1
prunus_persica Prupe.1G114000_v2.0.a1
pyrus_communis pycom13g12920 pycom16g12880
rosa_chinensis RchiOBHm_Chr4g0425841
rosa_laevigata RLG00000007336
rosa_multiflora Rmu_sc0007063.1_g000006 Rmu_sc0009636.1_g000002
rosa_roxburghii Rroxscaffold_5G00367820
rosa_rugosa Rorug04G0206700
rosa_samantha Rh4CG282200 Rh4DG266100
rosa_wichuraiana Rw4G022770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 54, 808
AccII CGCG 2 cut(s) 386, 693
AciI CCGC 3 cut(s) 691, 764, 1320
AclWI GGATC 5 cut(s) 73, 273, 323, 929, 1031
AcsI RAATTY 1 cut(s) 1346
AdeI CACNNNGTG 1 cut(s) 312
AfaI GTAC 5 cut(s) 305, 316, 389, 1056, 1388
AfiI CCNNNNNNNGG 4 cut(s) 56, 719, 1116, 1466
AflII CTTAAG 1 cut(s) 1156
AflIII ACRYGT 2 cut(s) 584, 1099
AjnI CCWGG 3 cut(s) 160, 336, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
Alw21I GWGCWC 2 cut(s) 189, 1288
AlwI GGATC 5 cut(s) 73, 273, 323, 929, 1031
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 1244
AoxI GGCC 2 cut(s) 108, 1332
ApeKI GCWGC 7 cut(s) 274, 503, 773, 1064, 1094, 1215, 1472
ApoI RAATTY 1 cut(s) 1346
Asp700I GAANNNNTTC 1 cut(s) 1260
AspLEI GCGC 3 cut(s) 386, 695, 1328
AspS9I GGNCC 1 cut(s) 628
AsuC2I CCSGG 1 cut(s) 1117
AsuHPI GGTGA 3 cut(s) 429, 929, 1199
AvaI CYCGRG 1 cut(s) 1244
AvaII GGWCC 1 cut(s) 628
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 189, 1288
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 7 cut(s) 286, 490, 760, 1051, 1081, 1202, 1459
BccI CCATC 7 cut(s) 214, 458, 619, 710, 1027, 1308, 1484
BceAI ACGGC 3 cut(s) 73, 786, 996
BciT130I CCWGG 3 cut(s) 162, 338, 632
BciVI GTATCC 2 cut(s) 197, 229
BcnI CCSGG 1 cut(s) 1117
BfaI CTAG 2 cut(s) 1004, 1250
BfmI CTRYAG 2 cut(s) 477, 1216
BfrI CTTAAG 1 cut(s) 1156
BfuI GTATCC 2 cut(s) 197, 229
BisI GCNGC 7 cut(s) 275, 504, 774, 1065, 1095, 1216, 1473
BlpI GCTNAGC 2 cut(s) 517, 666
BlsI GCNGC 7 cut(s) 276, 505, 775, 1066, 1096, 1217, 1474
BmcAI AGTACT 1 cut(s) 1388
Bme1390I CCNGG 4 cut(s) 162, 338, 632, 1117
Bme18I GGWCC 1 cut(s) 628
BmeT110I CYCGRG 1 cut(s) 1244
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 849
BmrFI CCNGG 4 cut(s) 162, 338, 632, 1117
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 1 cut(s) 1093
BmuI ACTGGG 1 cut(s) 680
BpiI GAAGAC 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 984
Bpu1102I GCTNAGC 2 cut(s) 517, 666
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 1117
BsaJI CCNNGG 1 cut(s) 1335
BsaWI WCCGGW 2 cut(s) 10, 1304
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 719, 1116, 1466
Bse1I ACTGG 3 cut(s) 440, 661, 686
BseBI CCWGG 3 cut(s) 162, 338, 632
BseDI CCNNGG 1 cut(s) 1335
BseGI GGATG 2 cut(s) 630, 1319
BseLI CCNNNNNNNGG 4 cut(s) 56, 719, 1116, 1466
BseMII CTCAG 4 cut(s) 222, 531, 657, 975
BseNI ACTGG 3 cut(s) 440, 661, 686
BseRI GAGGAG 2 cut(s) 1001, 1022
BseXI GCAGC 7 cut(s) 286, 490, 760, 1051, 1081, 1202, 1459
BsgI GTGCAG 2 cut(s) 1080, 1255
Bsh1236I CGCG 2 cut(s) 386, 693
BshFI GGCC 2 cut(s) 110, 1334
BsiHKAI GWGCWC 2 cut(s) 189, 1288
BsiHKCI CYCGRG 1 cut(s) 1244
BsiSI CCGG 3 cut(s) 11, 1117, 1305
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 4 cut(s) 56, 719, 1116, 1466
BsmFI GGGAC 1 cut(s) 11
BsnI GGCC 2 cut(s) 110, 1334
BsoBI CYCGRG 1 cut(s) 1244
Bsp1286I GDGCHC 2 cut(s) 189, 1288
Bsp1407I TGTACA 1 cut(s) 314
Bsp143I GATC 9 cut(s) 30, 65, 265, 328, 819, 919, 934, 1036, 1189
Bsp1720I GCTNAGC 2 cut(s) 517, 666
BspACI CCGC 3 cut(s) 691, 764, 1320
BspANI GGCC 2 cut(s) 110, 1334
BspCNI CTCAG 4 cut(s) 221, 530, 658, 976
BspFNI CGCG 2 cut(s) 386, 693
BspHI TCATGA 2 cut(s) 400, 1194
BspLI GGNNCC 1 cut(s) 849
BspMAI CTGCAG 1 cut(s) 1220
BspPI GGATC 5 cut(s) 73, 273, 323, 929, 1031
BspTI CTTAAG 1 cut(s) 1156
BsrGI TGTACA 1 cut(s) 314
BsrI ACTGG 3 cut(s) 440, 661, 686
BssECI CCNNGG 1 cut(s) 1335
BssMI GATC 9 cut(s) 30, 65, 265, 328, 819, 919, 934, 1036, 1189
BssT1I CCWWGG 1 cut(s) 1335
Bst2UI CCWGG 3 cut(s) 162, 338, 632
Bst4CI ACNGT 1 cut(s) 1144
Bst6I CTCTTC 4 cut(s) 152, 160, 945, 1161
BstAFI CTTAAG 1 cut(s) 1156
BstAPI GCANNNNNTGC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 5 cut(s) 208, 517, 666, 777, 984
BstENI CCTNNNNNAGG 1 cut(s) 717
BstF5I GGATG 2 cut(s) 630, 1319
BstFNI CGCG 2 cut(s) 386, 693
BstHHI GCGC 3 cut(s) 386, 695, 1328
BstKTI GATC 9 cut(s) 33, 68, 268, 331, 822, 922, 937, 1039, 1192
BstMBI GATC 9 cut(s) 30, 65, 265, 328, 819, 919, 934, 1036, 1189
BstMWI GCNNNNNNNGC 5 cut(s) 527, 536, 770, 1212, 1292
BstNI CCWGG 3 cut(s) 162, 338, 632
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 4 cut(s) 160, 336, 630, 1115
BstSFI CTRYAG 2 cut(s) 477, 1216
BstUI CGCG 2 cut(s) 386, 693
BstV1I GCAGC 7 cut(s) 286, 490, 760, 1051, 1081, 1202, 1459
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuI GTATCC 2 cut(s) 197, 229
BsuRI GGCC 2 cut(s) 110, 1334
BtsCI GGATG 2 cut(s) 630, 1319
BtsI GCAGTG 1 cut(s) 1225
BtsIMutI CAGTG 2 cut(s) 216, 1225
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 2 cut(s) 400, 1194
CfoI GCGC 3 cut(s) 386, 695, 1328
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 5 cut(s) 304, 315, 388, 1055, 1387
CviAII CATG 4 cut(s) 401, 585, 1127, 1195
CviQI GTAC 5 cut(s) 304, 315, 388, 1055, 1387
DdeI CTNAG 5 cut(s) 208, 517, 666, 777, 984
DpnI GATC 9 cut(s) 32, 67, 267, 330, 821, 921, 936, 1038, 1191
DpnII GATC 9 cut(s) 30, 65, 265, 328, 819, 919, 934, 1036, 1189
DraIII CACNNNGTG 1 cut(s) 312
Eam1104I CTCTTC 4 cut(s) 152, 160, 945, 1161
EarI CTCTTC 4 cut(s) 152, 160, 945, 1161
Eco130I CCWWGG 1 cut(s) 1335
Eco47I GGWCC 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 1244
EcoNI CCTNNNNNAGG 1 cut(s) 717
EcoRII CCWGG 3 cut(s) 160, 336, 630
EcoT14I CCWWGG 1 cut(s) 1335
ErhI CCWWGG 1 cut(s) 1335
FaeI CATG 4 cut(s) 404, 588, 1130, 1198
FaqI GGGAC 1 cut(s) 11
FatI CATG 4 cut(s) 400, 584, 1126, 1194
FauNDI CATATG 1 cut(s) 380
FblI GTMKAC 2 cut(s) 54, 808
Fnu4HI GCNGC 7 cut(s) 275, 504, 774, 1065, 1095, 1216, 1473
FokI GGATG 2 cut(s) 637, 1326
Fsp4HI GCNGC 7 cut(s) 275, 504, 774, 1065, 1095, 1216, 1473
FspBI CTAG 2 cut(s) 1004, 1250
GlaI GCGC 3 cut(s) 385, 694, 1327
GluI GCNGC 7 cut(s) 275, 504, 774, 1065, 1095, 1216, 1473
HaeIII GGCC 2 cut(s) 110, 1334
HapII CCGG 3 cut(s) 11, 1117, 1305
HhaI GCGC 3 cut(s) 386, 695, 1328
Hin1II CATG 4 cut(s) 404, 588, 1130, 1198
Hin6I GCGC 3 cut(s) 384, 693, 1326
HinP1I GCGC 3 cut(s) 384, 693, 1326
HincII GTYRAC 1 cut(s) 809
HindII GTYRAC 1 cut(s) 809
HinfI GANTC 7 cut(s) 93, 172, 250, 355, 427, 752, 877
HpaII CCGG 3 cut(s) 11, 1117, 1305
HphI GGTGA 3 cut(s) 429, 929, 1199
Hpy166II GTNNAC 6 cut(s) 55, 306, 315, 437, 809, 1030
Hpy188I TCNGA 9 cut(s) 177, 255, 282, 842, 886, 934, 963, 1089, 1111
Hpy188III TCNNGA 7 cut(s) 28, 44, 233, 332, 401, 1027, 1195
Hpy8I GTNNAC 6 cut(s) 55, 306, 315, 437, 809, 1030
HpyAV CCTTC 5 cut(s) 56, 100, 194, 754, 1470
HpyCH4III ACNGT 1 cut(s) 1144
HpyCH4IV ACGT 2 cut(s) 1101, 1353
HpyF10VI GCNNNNNNNGC 5 cut(s) 527, 536, 770, 1212, 1292
HpyF3I CTNAG 5 cut(s) 208, 517, 666, 777, 984
HpySE526I ACGT 2 cut(s) 1101, 1353
Hsp92II CATG 4 cut(s) 404, 588, 1130, 1198
HspAI GCGC 3 cut(s) 384, 693, 1326
Kzo9I GATC 9 cut(s) 30, 65, 265, 328, 819, 919, 934, 1036, 1189
LmnI GCTCC 5 cut(s) 78, 1283, 1292, 1307, 1435
Lsp1109I GCAGC 7 cut(s) 286, 490, 760, 1051, 1081, 1202, 1459
LweI GCATC 1 cut(s) 1093
MaeI CTAG 2 cut(s) 1004, 1250
MaeII ACGT 2 cut(s) 1101, 1353
MaeIII GTNAC 3 cut(s) 766, 1160, 1354
MalI GATC 9 cut(s) 32, 67, 267, 330, 821, 921, 936, 1038, 1191
MboI GATC 9 cut(s) 30, 65, 265, 328, 819, 919, 934, 1036, 1189
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 189, 1288
MlyI GAGTC 2 cut(s) 761, 871
MmeI TCCRAC 2 cut(s) 424, 1064
MnlI CCTC 9 cut(s) 256, 713, 886, 948, 979, 1000, 1113, 1454, 1462
MroXI GAANNNNTTC 1 cut(s) 1260
MseI TTAA 7 cut(s) 294, 834, 873, 951, 1146, 1157, 1175
MslI CAYNNNNRTG 2 cut(s) 405, 589
MspA1I CMGCKG 1 cut(s) 1215
MspCI CTTAAG 1 cut(s) 1156
MspI CCGG 3 cut(s) 11, 1117, 1305
MspR9I CCNGG 4 cut(s) 162, 338, 632, 1117
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 3 cut(s) 162, 338, 632
MvnI CGCG 2 cut(s) 386, 693
MwoI GCNNNNNNNGC 5 cut(s) 527, 536, 770, 1212, 1292
NciI CCSGG 1 cut(s) 1117
NdeI CATATG 1 cut(s) 380
NdeII GATC 9 cut(s) 30, 65, 265, 328, 819, 919, 934, 1036, 1189
NlaIII CATG 4 cut(s) 404, 588, 1130, 1198
NlaIV GGNNCC 1 cut(s) 849
NmuCI GTSAC 2 cut(s) 766, 1160
NspI RCATGY 1 cut(s) 588
PagI TCATGA 2 cut(s) 400, 1194
PciI ACATGT 1 cut(s) 584
PcsI WCGNNNNNNNCGW 1 cut(s) 1107
PdmI GAANNNNTTC 1 cut(s) 1260
PfeI GAWTC 5 cut(s) 93, 172, 250, 355, 427
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 7 cut(s) 276, 505, 775, 1066, 1096, 1217, 1474
PleI GAGTC 2 cut(s) 760, 871
PpsI GAGTC 2 cut(s) 760, 871
PscI ACATGT 1 cut(s) 584
Psp6I CCWGG 3 cut(s) 160, 336, 630
PspGI CCWGG 3 cut(s) 160, 336, 630
PspN4I GGNNCC 1 cut(s) 849
PspPI GGNCC 1 cut(s) 628
PstI CTGCAG 1 cut(s) 1220
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 1215
RsaI GTAC 5 cut(s) 305, 316, 389, 1056, 1388
RsaNI GTAC 5 cut(s) 304, 315, 388, 1055, 1387
RseI CAYNNNNRTG 2 cut(s) 405, 589
SalI GTCGAC 1 cut(s) 807
SaqAI TTAA 7 cut(s) 294, 834, 873, 951, 1146, 1157, 1175
SatI GCNGC 7 cut(s) 275, 504, 774, 1065, 1095, 1216, 1473
Sau3AI GATC 9 cut(s) 30, 65, 265, 328, 819, 919, 934, 1036, 1189
Sau96I GGNCC 1 cut(s) 628
ScaI AGTACT 1 cut(s) 1388
SchI GAGTC 2 cut(s) 761, 871
ScrFI CCNGG 4 cut(s) 162, 338, 632, 1117
SduI GDGCHC 2 cut(s) 189, 1288
SfaNI GCATC 1 cut(s) 1093
SfcI CTRYAG 2 cut(s) 477, 1216
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 2 cut(s) 405, 589
SmlI CTYRAG 2 cut(s) 44, 1156
SmoI CTYRAG 2 cut(s) 44, 1156
SsiI CCGC 3 cut(s) 691, 764, 1320
SspMI CTAG 2 cut(s) 1004, 1250
StyD4I CCNGG 4 cut(s) 160, 336, 630, 1115
StyI CCWWGG 1 cut(s) 1335
TaaI ACNGT 1 cut(s) 1144
TaiI ACGT 2 cut(s) 1104, 1356
TaqI TCGA 3 cut(s) 96, 808, 818
TatI WGTACW 4 cut(s) 303, 314, 1054, 1386
TfiI GAWTC 5 cut(s) 93, 172, 250, 355, 427
Tru1I TTAA 7 cut(s) 294, 834, 873, 951, 1146, 1157, 1175
Tru9I TTAA 7 cut(s) 294, 834, 873, 951, 1146, 1157, 1175
TscAI CASTG 2 cut(s) 216, 1225
TseFI GTSAC 2 cut(s) 766, 1160
TseI GCWGC 7 cut(s) 274, 503, 773, 1064, 1094, 1215, 1472
Tsp45I GTSAC 2 cut(s) 766, 1160
TspDTI ATGAA 7 cut(s) 213, 367, 389, 1115, 1211, 1215, 1354
TspRI CASTG 2 cut(s) 216, 1225
Vha464I CTTAAG 1 cut(s) 1156
VpaK11BI GGWCC 1 cut(s) 628
XagI CCTNNNNNAGG 1 cut(s) 717
XapI RAATTY 1 cut(s) 1346
XceI RCATGY 1 cut(s) 588
XmiI GTMKAC 2 cut(s) 54, 808
XmnI GAANNNNTTC 1 cut(s) 1260
XspI CTAG 2 cut(s) 1004, 1250
ZrmI AGTACT 1 cut(s) 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.