MD13G1150000.v1.1

gal1,galk

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
11767363 .. 11771014
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1150000.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGGTACAAATGGCAAAACACGAAGAACTTCCGATTCCAATCCACGACACCCTCGACGCCGTCTACGGCAACTCCTCCCAACTCGACGAGGCCCAGCTCCGATTCAACCGCCTGAAGTCCAAGTTCCAGCAGGTTTTCGGTCACCCCCCTCAACTCTTCGCTCGCTCTCCAGGGAGGGTGAACTTGGTCGGAGAGCACATAGACTACGAGGGCTACTCGGTGCTGCCGATGGCCATACGACAGGACACCATTGTCGCAATTCGGAAGCACGACGACGGAGACGCCGAGAAAGTTCTCAGAATTGCCAATGTCAACGACAAGTACCAAATTTGTACTTACCCCGCCGACCCGACCCAGGAAATTGACTTGAAGAATCACAAATGGGGGCATTATTTCATTTGTGGGTACAAAGGTTTTTATGAGTTTGCCAAATCCAAGGGAGAAAATGTTGGACCAGTTGGACTTGATGTTCTTATTGATGGAACAGTTCCTACAGGCTCTGGACTATCTAGCTCTGCTGCATTAGTTTGTGCTTCTACGATTGCGATAATGGCTGCTTTTGGTTTGAATTTCCCCAAGAAAGAAATTGCCCAACTTACATGCGAGTGTGAGCGACACATTGGCACACAATCTGGTGGAATGGATCAGGCAATCTCGGTGATGGCCAAGCCTGGGTTTGCAGAACTTATTGATTTCAACCCAATTCGTGCTACTGATGTGCAACTTCCGGCTGGTGGAACTTTTGTTGTGGCCCATTCTTTGGCAGATTCTCAGAAAGCAGTAACTGCTGCCACAAATTACAATAACCGAGTTGTTGAGTGTCGCCTGGCTGCTATTGTGCTTGGTATAAAGTTGGGGATGAAACCGCAAGAGGCAATTTCAAGTGTCAAAACTCTTTCTGATGTTGAAGGCTTGTGCATGTCATTTGCTAGTACTCGTGGGTCTTCGGATCCAATCGTGGCTGTAAAGGAGAATTTAAAAGAAGAACCTTATACAGCTGGGGAAATAGAGAAAATCATTGGGGAGAGCTTACCCTCTATCTTGAGAGATTCTCCGTCTTCTTTGAATGTTTTGAAAGCTGCAAAGCACTTCAAGTTATCCCAGAGGGCCGCCCATGTGTATTCTGAAGCCAAGCGGGTATATGCTTTCAAGGATGCCGTATCATCAACAGTAAGTGATGAGGATAAGCTAAAGAGGCTTGGTGATCTTATGAATGATAGCCACTACAGCTGCAGTGTGTTGTACGAGTGCAGCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGGGAGAATGGTGCTCTTGGGGCAAGGCTTACGGGAGCTGGATGGGGTGGCTGTGCAGTTGCATTGGTAAAAGATAGTATTGTCCCACAATTCATCCTCAATTTAAAGGAACGCTTTTACCAGTCACGAATTGACAGAGGCGTCATCAACAACAACGATCTCGGCCTCTATGTTTTTGCGTCCAAGCCCTCCAGCGGTGCTGCTGTCTTCAAGTTTTAG

Protein Analysis

502

Amino Acids

54.53

Weight (kDa)

6.21

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GalKase_gal_bdg PF10509 41 - 89 1.3e-22 Galactokinase galactose-binding signature
GHMP_kinases_N PF00288 147 - 222 5.9e-18 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 397 - 469 2.7e-15 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014620)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06580
fragaria_vesca FvH4_4g20200 FvH4_4g20200
malus_domestica MD13G1150000.v1.1 MD16G1150400.v1.1
prunus_persica Prupe.1G114000_v2.0.a1
pyrus_communis pycom13g12920 pycom16g12880
rosa_chinensis RchiOBHm_Chr4g0425841
rosa_laevigata RLG00000007336
rosa_multiflora Rmu_sc0007063.1_g000006 Rmu_sc0009636.1_g000002
rosa_roxburghii Rroxscaffold_5G00367820
rosa_rugosa Rorug04G0206700
rosa_samantha Rh4CG282200 Rh4DG266100
rosa_wichuraiana Rw4G022770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 251, 1427
Acc36I ACCTGC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 760
AccI GTMKAC 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 1258
AciI CCGC 6 cut(s) 109, 342, 866, 1110, 1135, 1482
AclWI GGATC 3 cut(s) 651, 944, 957
AcoI YGGCCR 2 cut(s) 231, 663
AcsI RAATTY 3 cut(s) 327, 568, 973
AcuI CTGAAG 2 cut(s) 134, 1146
AcyI GRCGYC 3 cut(s) 57, 282, 1428
AfaI GTAC 6 cut(s) 6, 323, 334, 407, 934, 1244
AfiI CCNNNNNNNGG 5 cut(s) 355, 672, 734, 760, 1481
AjnI CCWGG 4 cut(s) 169, 354, 670, 825
AloI GAACNNNNNNTCC 2 cut(s) 453, 485
AluBI AGCT 9 cut(s) 97, 513, 998, 1029, 1079, 1189, 1230, 1254, 1325
AluI AGCT 9 cut(s) 97, 513, 998, 1029, 1079, 1189, 1230, 1254, 1325
Alw21I GWGCWC 2 cut(s) 198, 1303
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 3 cut(s) 651, 944, 957
AlwNI CAGNNNCTG 2 cut(s) 500, 785
Aor13HI TCCGGA 1 cut(s) 1258
AoxI GGCC 6 cut(s) 90, 231, 663, 750, 1107, 1450
ApeKI GCWGC 9 cut(s) 223, 518, 554, 788, 830, 1079, 1230, 1251, 1487
ApoI RAATTY 3 cut(s) 327, 568, 973
Asp700I GAANNNNTTC 1 cut(s) 27
AspS9I GGNCC 4 cut(s) 91, 452, 751, 1107
AsuHPI GGTGA 4 cut(s) 134, 190, 670, 1214
AvaII GGWCC 1 cut(s) 452
BaeI ACNNNNGTAYC 2 cut(s) 397, 430
BalI TGGCCA 2 cut(s) 233, 665
BamHI GGATCC 1 cut(s) 949
BauI CACGAG 1 cut(s) 936
BbsI GAAGAC 3 cut(s) 936, 1050, 1486
Bbv12I GWGCWC 2 cut(s) 198, 1303
BbvI GCAGC 9 cut(s) 210, 505, 541, 775, 817, 1066, 1217, 1263, 1474
BccI CCATC 4 cut(s) 223, 473, 655, 1323
BceAI ACGGC 3 cut(s) 44, 82, 1142
BciT130I CCWGG 4 cut(s) 171, 356, 672, 827
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 2 cut(s) 510, 930
BfmI CTRYAG 3 cut(s) 492, 1225, 1231
BfuAI ACCTGC 1 cut(s) 121
BmcAI AGTACT 1 cut(s) 934
Bme1390I CCNGG 4 cut(s) 171, 356, 672, 827
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 4 cut(s) 91, 452, 751, 1107
BmiI GGNNCC 1 cut(s) 951
BmrFI CCNGG 4 cut(s) 171, 356, 672, 827
BmsI GCATC 1 cut(s) 1144
BpiI GAAGAC 3 cut(s) 936, 1050, 1486
BplI GAGNNNNNCTC 4 cut(s) 200, 232, 1036, 1068
BpmI CTGGAG 2 cut(s) 153, 1462
BpuEI CTTGAG 1 cut(s) 1063
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 3 cut(s) 57, 282, 1428
BsaJI CCNNGG 4 cut(s) 170, 354, 435, 671
BsaWI WCCGGW 1 cut(s) 1258
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 432, 462
Bsc4I CCNNNNNNNGG 5 cut(s) 355, 672, 734, 760, 1481
Bse1I ACTGG 2 cut(s) 455, 1408
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 1258
BseBI CCWGG 4 cut(s) 171, 356, 672, 827
BseDI CCNNGG 4 cut(s) 170, 354, 435, 671
BseGI GGATG 4 cut(s) 864, 1159, 1334, 1380
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 5 cut(s) 355, 672, 734, 760, 1481
BseMII CTCAG 2 cut(s) 310, 785
BseNI ACTGG 2 cut(s) 455, 1408
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 9 cut(s) 210, 505, 541, 775, 817, 1066, 1217, 1263, 1474
BseYI CCCAGC 2 cut(s) 93, 998
BsgI GTGCAG 2 cut(s) 1270, 1362
BshFI GGCC 6 cut(s) 92, 233, 665, 752, 1109, 1452
BsiHKAI GWGCWC 2 cut(s) 198, 1303
BsiSI CCGG 2 cut(s) 728, 1259
BslFI GGGAC 1 cut(s) 1355
BslI CCNNNNNNNGG 5 cut(s) 355, 672, 734, 760, 1481
BsmAI GTCTC 1 cut(s) 273
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 1355
BsnI GGCC 6 cut(s) 92, 233, 665, 752, 1109, 1452
Bsp1286I GDGCHC 2 cut(s) 198, 1303
Bsp13I TCCGGA 1 cut(s) 1258
Bsp143I GATC 4 cut(s) 643, 949, 1204, 1444
BspACI CCGC 6 cut(s) 109, 342, 866, 1110, 1135, 1482
BspANI GGCC 6 cut(s) 92, 233, 665, 752, 1109, 1452
BspCNI CTCAG 2 cut(s) 309, 784
BspEI TCCGGA 1 cut(s) 1258
BspLI GGNNCC 1 cut(s) 951
BspMAI CTGCAG 1 cut(s) 1235
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 3 cut(s) 651, 944, 957
BsrI ACTGG 2 cut(s) 455, 1408
BssECI CCNNGG 4 cut(s) 170, 354, 435, 671
BssMI GATC 4 cut(s) 643, 949, 1204, 1444
BssNI GRCGYC 3 cut(s) 57, 282, 1428
BssSI CACGAG 1 cut(s) 936
BssT1I CCWWGG 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 4 cut(s) 171, 356, 672, 827
Bst4CI ACNGT 2 cut(s) 487, 1171
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 3 cut(s) 57, 282, 1428
BstAPI GCANNNNNTGC 1 cut(s) 785
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 296, 771
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 4 cut(s) 864, 1159, 1334, 1380
BstKTI GATC 4 cut(s) 646, 952, 1207, 1447
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 4 cut(s) 643, 949, 1204, 1444
BstMWI GCNNNNNNNGC 5 cut(s) 551, 785, 1195, 1227, 1307
BstNI CCWGG 4 cut(s) 171, 356, 672, 827
BstNSI RCATGY 2 cut(s) 603, 922
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 4 cut(s) 169, 354, 670, 825
BstSFI CTRYAG 3 cut(s) 492, 1225, 1231
BstV1I GCAGC 9 cut(s) 210, 505, 541, 775, 817, 1066, 1217, 1263, 1474
BstV2I GAAGAC 3 cut(s) 936, 1050, 1486
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
BsuRI GGCC 6 cut(s) 92, 233, 665, 752, 1109, 1452
BtsCI GGATG 4 cut(s) 864, 1159, 1334, 1380
BtsI GCAGTG 1 cut(s) 1240
BtsIMutI CAGTG 1 cut(s) 1240
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 163
CaiI CAGNNNCTG 2 cut(s) 500, 785
Cfr13I GGNCC 4 cut(s) 91, 452, 751, 1107
CseI GACGC 4 cut(s) 65, 290, 1417, 1455
Csp6I GTAC 6 cut(s) 5, 322, 333, 406, 933, 1243
CviAII CATG 3 cut(s) 600, 919, 1115
CviQI GTAC 6 cut(s) 5, 322, 333, 406, 933, 1243
DdeI CTNAG 2 cut(s) 296, 771
DpnI GATC 4 cut(s) 645, 951, 1206, 1446
DpnII GATC 4 cut(s) 643, 949, 1204, 1444
DraI TTTAAA 2 cut(s) 978, 1392
DrdI GACNNNNNNGTC 2 cut(s) 251, 1427
DseDI GACNNNNNNGTC 2 cut(s) 251, 1427
EaeI YGGCCR 2 cut(s) 231, 663
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 134, 1146
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 4 cut(s) 169, 354, 670, 825
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 3 cut(s) 603, 922, 1118
FalI AAGNNNNNCTT 2 cut(s) 1385, 1417
FaqI GGGAC 1 cut(s) 1355
FatI CATG 3 cut(s) 599, 918, 1114
FauI CCCGC 2 cut(s) 349, 1128
FblI GTMKAC 1 cut(s) 63
FokI GGATG 4 cut(s) 871, 1166, 1341, 1367
FspBI CTAG 2 cut(s) 510, 930
GsaI CCCAGC 2 cut(s) 97, 1002
GsuI CTGGAG 2 cut(s) 153, 1462
HaeIII GGCC 6 cut(s) 92, 233, 665, 752, 1109, 1452
HapII CCGG 2 cut(s) 728, 1259
HgaI GACGC 4 cut(s) 65, 290, 1417, 1455
Hin1I GRCGYC 3 cut(s) 57, 282, 1428
Hin1II CATG 3 cut(s) 603, 922, 1118
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 5 cut(s) 34, 102, 373, 767, 1049
HpaII CCGG 2 cut(s) 728, 1259
HphI GGTGA 4 cut(s) 134, 190, 670, 1214
Hpy166II GTNNAC 3 cut(s) 64, 181, 313
Hpy188I TCNGA 9 cut(s) 33, 101, 191, 264, 299, 774, 901, 949, 1126
Hpy188III TCNNGA 5 cut(s) 501, 1042, 1259, 1289, 1413
Hpy8I GTNNAC 3 cut(s) 64, 181, 313
Hpy99I CGWCG 4 cut(s) 59, 89, 275, 278
HpyAV CCTTC 1 cut(s) 902
HpyCH4III ACNGT 2 cut(s) 487, 1171
HpyCH4V TGCA 9 cut(s) 521, 680, 721, 918, 1082, 1233, 1251, 1343, 1349
HpyF10VI GCNNNNNNNGC 5 cut(s) 551, 785, 1195, 1227, 1307
HpyF3I CTNAG 2 cut(s) 296, 771
Hsp92I GRCGYC 3 cut(s) 57, 282, 1428
Hsp92II CATG 3 cut(s) 603, 922, 1118
Kpn2I TCCGGA 1 cut(s) 1258
Kzo9I GATC 4 cut(s) 643, 949, 1204, 1444
LmnI GCTCC 2 cut(s) 102, 1322
Lsp1109I GCAGC 9 cut(s) 210, 505, 541, 775, 817, 1066, 1217, 1263, 1474
LweI GCATC 1 cut(s) 1144
MaeI CTAG 2 cut(s) 510, 930
MaeIII GTNAC 3 cut(s) 140, 781, 1410
MalI GATC 4 cut(s) 645, 951, 1206, 1446
MboI GATC 4 cut(s) 643, 949, 1204, 1444
MboII GAAGA 8 cut(s) 35, 148, 382, 936, 995, 1050, 1280, 1486
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 2 cut(s) 198, 1303
MlsI TGGCCA 2 cut(s) 233, 665
MluNI TGGCCA 2 cut(s) 233, 665
MmeI TCCRAC 4 cut(s) 169, 430, 439, 1245
Mox20I TGGCCA 2 cut(s) 233, 665
MroI TCCGGA 1 cut(s) 1258
MroXI GAANNNNTTC 1 cut(s) 27
MscI TGGCCA 2 cut(s) 233, 665
MseI TTAA 2 cut(s) 977, 1391
MslI CAYNNNNRTG 1 cut(s) 604
Msp20I TGGCCA 2 cut(s) 233, 665
MspA1I CMGCKG 4 cut(s) 998, 1230, 1254, 1482
MspI CCGG 2 cut(s) 728, 1259
MspR9I CCNGG 4 cut(s) 171, 356, 672, 827
MvaI CCWGG 4 cut(s) 171, 356, 672, 827
MwoI GCNNNNNNNGC 5 cut(s) 551, 785, 1195, 1227, 1307
NdeII GATC 4 cut(s) 643, 949, 1204, 1444
NlaIII CATG 3 cut(s) 603, 922, 1118
NlaIV GGNNCC 1 cut(s) 951
NmeAIII GCCGAG 2 cut(s) 310, 1428
NmuCI GTSAC 2 cut(s) 140, 1410
NspI RCATGY 2 cut(s) 603, 922
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 224, 282
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 5 cut(s) 34, 102, 373, 767, 1049
PflFI GACNNNGTC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 760
Psp6I CCWGG 4 cut(s) 169, 354, 670, 825
PspEI GGTNACC 1 cut(s) 140
PspFI CCCAGC 2 cut(s) 93, 998
PspGI CCWGG 4 cut(s) 169, 354, 670, 825
PspN4I GGNNCC 1 cut(s) 951
PspPI GGNCC 4 cut(s) 91, 452, 751, 1107
PsrI GAACNNNNNNTAC 2 cut(s) 475, 507
PstI CTGCAG 1 cut(s) 1235
PstNI CAGNNNCTG 2 cut(s) 500, 785
PsuI RGATCY 1 cut(s) 949
PsyI GACNNNGTC 1 cut(s) 59
PvuII CAGCTG 3 cut(s) 998, 1230, 1254
RsaI GTAC 6 cut(s) 6, 323, 334, 407, 934, 1244
RsaNI GTAC 6 cut(s) 5, 322, 333, 406, 933, 1243
RseI CAYNNNNRTG 1 cut(s) 604
SaqAI TTAA 2 cut(s) 977, 1391
Sau3AI GATC 4 cut(s) 643, 949, 1204, 1444
Sau96I GGNCC 4 cut(s) 91, 452, 751, 1107
ScaI AGTACT 1 cut(s) 934
ScrFI CCNGG 4 cut(s) 171, 356, 672, 827
SduI GDGCHC 2 cut(s) 198, 1303
SfaNI GCATC 1 cut(s) 1144
SfcI CTRYAG 3 cut(s) 492, 1225, 1231
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 1042
SmoI CTYRAG 1 cut(s) 1042
SsiI CCGC 6 cut(s) 109, 342, 866, 1110, 1135, 1482
SspI AATATT 1 cut(s) 1282
SspMI CTAG 2 cut(s) 510, 930
StyD4I CCNGG 4 cut(s) 169, 354, 670, 825
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 487, 1171
TaqI TCGA 2 cut(s) 54, 84
TaqII GACCGA 1 cut(s) 128
TatI WGTACW 2 cut(s) 332, 932
TauI GCSGC 1 cut(s) 1112
TfiI GAWTC 5 cut(s) 34, 102, 373, 767, 1049
Tru1I TTAA 2 cut(s) 977, 1391
Tru9I TTAA 2 cut(s) 977, 1391
TscAI CASTG 1 cut(s) 1240
TseFI GTSAC 2 cut(s) 140, 1410
TseI GCWGC 9 cut(s) 223, 518, 554, 788, 830, 1079, 1230, 1251, 1487
Tsp45I GTSAC 2 cut(s) 140, 1410
TspDTI ATGAA 4 cut(s) 385, 875, 1226, 1369
TspGWI ACGGA 2 cut(s) 291, 1044
TspRI CASTG 1 cut(s) 1240
Tth111I GACNNNGTC 1 cut(s) 59
Van91I CCANNNNNTGG 1 cut(s) 760
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 3 cut(s) 327, 568, 973
XceI RCATGY 2 cut(s) 603, 922
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 2 cut(s) 510, 930
ZrmI AGTACT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.