Prupe.1G114000_v2.0.a1

gal1,galk

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014620
Physical Location & Seq
Reverse (-)
9048386 .. 9052229
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G114000.1

Sequence Viewer

Length: 1509 bp
ATGGCTCAAATCTTCAAGCACGAAGAGCTCCCGATCCCAATTCACGACAGCCTGGATCCTGTCTATGGCGACTCTTCCCAACTCGAAGAGGCGCAGCTTCGTTTCCACACTTTGAAGTCCAAATTTCAACAGGTCTTCGGTCAAGCCCCTCAACTGTTCGCTCGCTCTCCAGGGAGAGTGAACTTGATCGGAGAGCATATAGACTATGAGGGCTATTCGGTGTTGCCGATGGCGATACGACAGGACACCATTGTCGCAATTCGGAGGCACGACGAGGTAGAGGCCGAGAAGGTTCTCAAAATTGCCAATGTCAACGATAAGTACCAAATATGTACTTATCCCGCTGACCCTAACCAGGAAATTGACTTGAAGAATCACAAATGGGGCCATTACTTCATTTGTGGGTACAAAGGTTTTTATGAGTACGCCAAATCCAAAGGAGCAAATTTTGGCGCACCAGTTGGACTTGATGTTCTTGTTGATGGAACAGTTCCTGCAGGGTCTGGACTATCAAGCTCTGCGGCATTAGTTTGTGCTTCTACTATTGCTATAATGGCTGCTTTTGATGTGAATTTTCCCAAGAAAGAAGTTGCCCAACTTACATGCGACTGTGAGCGACACATTGGTACACAATCAGGTGGAATGGATCAGGCAATCTCAGTGATGGCCAAGACTGGATTTGCAGAGCTAATTGATTTCAACCCTATACGTGCTACTGATGTGCGACTTCCAGATGGTGGAACTTTTGTTGTAGCCCATTCCTTAGCAGAATCTCAGAAAGCAGTAACGGCGGCAATAAATTACAATAACAGAGTTGTTGAATGTCGTCTAGCTTCTATTTTGCTGGGTATAAATTTGGGGATGAAACCGCAAGAGGCAATTTCAAAAGCCAAAACTCTTTCTGATGTTGAAGGGTTGTGCATATCATTTGCTAGTACTCGTGGGTCTTCAGATCCTGCCCTTGCTGTAAAGGAGTATTTAAAAGAAGAACCTTATACAACTACCGAAATAGAGAAAATCCTTGGGGAAAGTCTACCATCTATCTTCGCAACTTCTCCATCTTCTTTGAATGTGCTGAATGCTGCTAAGCACTTCAAGTTATATCAGAGAGCCTCCCATGTCTACTCTGAAGCCAAGCGGGTACATGCTTTCAAGGAGGCTGTATCATCAAATTTAAGTGATGAGGATAAGCTAAAGCACCTTGGCGATCTTATGAATGGGAGCCATTATAGCTGCAGTGTGTTATATGAGTGCAGCTGTCCGGAGTTGGACGAACTCGTAAATATTTGTCGGGAGAATGGGGCTCTTGGGGCAAGGCTTACAGGGGCTGGATGGGGTGGCTGTGCTGTTGCTTTGGTAAAGGATAGTATTGTCCCAGAGTTTATTCTTAACTTGAAGGAACGGTTCTACCAGTCGCGGATCGACAGAGGTGTCATAAACAATAATGATCTCGGCCTATATATTTTCGCTTCCAAGCCCTCGAGTGGAGCTGCTATTTTCAAGCTCTAG

Protein Analysis

503

Amino Acids

54.81

Weight (kDa)

5.9

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014620)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06580
fragaria_vesca FvH4_4g20200 FvH4_4g20200
malus_domestica MD13G1150000.v1.1 MD16G1150400.v1.1
prunus_persica Prupe.1G114000_v2.0.a1
pyrus_communis pycom13g12920 pycom16g12880
rosa_chinensis RchiOBHm_Chr4g0425841
rosa_laevigata RLG00000007336
rosa_multiflora Rmu_sc0007063.1_g000006 Rmu_sc0009636.1_g000002
rosa_roxburghii Rroxscaffold_5G00367820
rosa_rugosa Rorug04G0206700
rosa_samantha Rh4CG282200 Rh4DG266100
rosa_wichuraiana Rw4G022770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 251, 1430
AccB7I CCANNNNNTGG 1 cut(s) 737
AccI GTMKAC 2 cut(s) 1033, 1122
AccII CGCG 1 cut(s) 1417
AccIII TCCGGA 1 cut(s) 1261
AciI CCGC 6 cut(s) 342, 521, 791, 869, 1138, 1417
AclWI GGATC 6 cut(s) 28, 50, 63, 654, 947, 1427
AcoI YGGCCR 1 cut(s) 666
AcsI RAATTY 5 cut(s) 122, 445, 571, 853, 1171
AcuI CTGAAG 2 cut(s) 933, 1149
AfaI GTAC 7 cut(s) 323, 334, 407, 425, 628, 937, 1143
AfiI CCNNNNNNNGG 4 cut(s) 65, 355, 737, 1484
AjnI CCWGG 3 cut(s) 51, 169, 354
AloI GAACNNNNNNTCC 2 cut(s) 456, 488
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 6 cut(s) 28, 50, 63, 654, 947, 1427
AlwNI CAGNNNCTG 4 cut(s) 494, 503, 956, 1328
Ama87I CYCGRG 1 cut(s) 1480
Aor13HI TCCGGA 1 cut(s) 1261
AoxI GGCC 4 cut(s) 282, 385, 666, 1453
ApeKI GCWGC 6 cut(s) 94, 557, 1082, 1233, 1254, 1490
ApoI RAATTY 5 cut(s) 122, 445, 571, 853, 1171
AspLEI GCGC 2 cut(s) 94, 455
AspS9I GGNCC 1 cut(s) 385
AvaI CYCGRG 1 cut(s) 1480
BaeI ACNNNNGTAYC 2 cut(s) 397, 430
BalI TGGCCA 1 cut(s) 668
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 2 cut(s) 30, 1306
BauI CACGAG 1 cut(s) 939
BbsI GAAGAC 2 cut(s) 127, 939
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 6 cut(s) 106, 544, 1069, 1220, 1266, 1477
BccI CCATC 7 cut(s) 223, 476, 658, 728, 1045, 1066, 1326
BceAI ACGGC 1 cut(s) 804
BciT130I CCWGG 3 cut(s) 53, 171, 356
BfaI CTAG 3 cut(s) 830, 933, 1507
BfmI CTRYAG 2 cut(s) 495, 1234
BisI GCNGC 8 cut(s) 95, 522, 558, 792, 1083, 1234, 1255, 1491
BlpI GCTNAGC 1 cut(s) 1086
BlsI GCNGC 8 cut(s) 96, 523, 559, 793, 1084, 1235, 1256, 1492
BmcAI AGTACT 1 cut(s) 937
Bme1390I CCNGG 3 cut(s) 53, 171, 356
BmeT110I CYCGRG 1 cut(s) 1480
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 3 cut(s) 57, 386, 1223
BmrFI CCNGG 3 cut(s) 53, 171, 356
BpiI GAAGAC 2 cut(s) 127, 939
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 763
Bpu1102I GCTNAGC 1 cut(s) 1086
BsaAI YACGTR 1 cut(s) 710
BsaJI CCNNGG 3 cut(s) 170, 1021, 1201
BsaWI WCCGGW 1 cut(s) 1261
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 355, 737, 1484
Bse1I ACTGG 3 cut(s) 458, 679, 1411
BseAI TCCGGA 1 cut(s) 1261
BseBI CCWGG 3 cut(s) 53, 171, 356
BseDI CCNNGG 3 cut(s) 170, 1021, 1201
BseGI GGATG 2 cut(s) 867, 1337
BseLI CCNNNNNNNGG 4 cut(s) 65, 355, 737, 1484
BseMII CTCAG 2 cut(s) 672, 788
BseNI ACTGG 3 cut(s) 458, 679, 1411
BseXI GCAGC 6 cut(s) 106, 544, 1069, 1220, 1266, 1477
BseYI CCCAGC 1 cut(s) 844
BsgI GTGCAG 1 cut(s) 1273
Bsh1236I CGCG 1 cut(s) 1417
BshFI GGCC 4 cut(s) 284, 387, 668, 1455
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 1480
BsiSI CCGG 1 cut(s) 1262
BslFI GGGAC 1 cut(s) 1358
BslI CCNNNNNNNGG 4 cut(s) 65, 355, 737, 1484
BsmFI GGGAC 1 cut(s) 1358
BsmI GAATGC 1 cut(s) 1084
BsnI GGCC 4 cut(s) 284, 387, 668, 1455
BsoBI CYCGRG 1 cut(s) 1480
Bsp1286I GDGCHC 2 cut(s) 30, 1306
Bsp13I TCCGGA 1 cut(s) 1261
Bsp143I GATC 8 cut(s) 33, 55, 186, 646, 952, 1207, 1419, 1447
Bsp1720I GCTNAGC 1 cut(s) 1086
BspACI CCGC 6 cut(s) 342, 521, 791, 869, 1138, 1417
BspANI GGCC 4 cut(s) 284, 387, 668, 1455
BspCNI CTCAG 2 cut(s) 671, 787
BspEI TCCGGA 1 cut(s) 1261
BspFNI CGCG 1 cut(s) 1417
BspLI GGNNCC 3 cut(s) 57, 386, 1223
BspMAI CTGCAG 2 cut(s) 499, 1238
BspPI GGATC 6 cut(s) 28, 50, 63, 654, 947, 1427
BspQI GCTCTTC 1 cut(s) 18
BsrI ACTGG 3 cut(s) 458, 679, 1411
BssECI CCNNGG 3 cut(s) 170, 1021, 1201
BssMI GATC 8 cut(s) 33, 55, 186, 646, 952, 1207, 1419, 1447
BssSI CACGAG 1 cut(s) 939
BssT1I CCWWGG 2 cut(s) 1021, 1201
Bst2BI CACGAG 1 cut(s) 939
Bst2UI CCWGG 3 cut(s) 53, 171, 356
Bst4CI ACNGT 4 cut(s) 156, 490, 611, 1404
Bst6I CTCTTC 3 cut(s) 18, 79, 81
BstBAI YACGTR 1 cut(s) 710
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 4 cut(s) 658, 763, 774, 1086
BstF5I GGATG 2 cut(s) 867, 1337
BstFNI CGCG 1 cut(s) 1417
BstHHI GCGC 2 cut(s) 94, 455
BstKTI GATC 8 cut(s) 36, 58, 189, 649, 955, 1210, 1422, 1450
BstMBI GATC 8 cut(s) 33, 55, 186, 646, 952, 1207, 1419, 1447
BstMWI GCNNNNNNNGC 5 cut(s) 25, 554, 788, 1230, 1310
BstNI CCWGG 3 cut(s) 53, 171, 356
BstNSI RCATGY 2 cut(s) 606, 1148
BstSCI CCNGG 3 cut(s) 51, 169, 354
BstSFI CTRYAG 2 cut(s) 495, 1234
BstUI CGCG 1 cut(s) 1417
BstV1I GCAGC 6 cut(s) 106, 544, 1069, 1220, 1266, 1477
BstV2I GAAGAC 2 cut(s) 127, 939
BstX2I RGATCY 2 cut(s) 55, 952
BstYI RGATCY 2 cut(s) 55, 952
BsuRI GGCC 4 cut(s) 284, 387, 668, 1455
BtsCI GGATG 2 cut(s) 867, 1337
BtsI GCAGTG 1 cut(s) 1243
BtsIMutI CAGTG 2 cut(s) 666, 1243
Cac8I GCNNGC 1 cut(s) 163
CaiI CAGNNNCTG 4 cut(s) 494, 503, 956, 1328
CfoI GCGC 2 cut(s) 94, 455
Cfr13I GGNCC 1 cut(s) 385
Csp6I GTAC 7 cut(s) 322, 333, 406, 424, 627, 936, 1142
CviAII CATG 3 cut(s) 603, 1118, 1145
CviQI GTAC 7 cut(s) 322, 333, 406, 424, 627, 936, 1142
DdeI CTNAG 4 cut(s) 658, 763, 774, 1086
DpnI GATC 8 cut(s) 35, 57, 188, 648, 954, 1209, 1421, 1449
DpnII GATC 8 cut(s) 33, 55, 186, 646, 952, 1207, 1419, 1447
DraI TTTAAA 1 cut(s) 981
DrdI GACNNNNNNGTC 2 cut(s) 251, 1430
DseDI GACNNNNNNGTC 2 cut(s) 251, 1430
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 3 cut(s) 18, 79, 81
EarI CTCTTC 3 cut(s) 18, 79, 81
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 1021, 1201
Eco24I GRGCYC 2 cut(s) 30, 1306
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 933, 1149
Eco88I CYCGRG 1 cut(s) 1480
EcoICRI GAGCTC 1 cut(s) 28
EcoRII CCWGG 3 cut(s) 51, 169, 354
EcoT14I CCWWGG 2 cut(s) 1021, 1201
EcoT38I GRGCYC 2 cut(s) 30, 1306
ErhI CCWWGG 2 cut(s) 1021, 1201
FaeI CATG 3 cut(s) 606, 1121, 1148
FaqI GGGAC 1 cut(s) 1358
FatI CATG 3 cut(s) 602, 1117, 1144
FauI CCCGC 2 cut(s) 349, 1131
FblI GTMKAC 2 cut(s) 1033, 1122
Fnu4HI GCNGC 8 cut(s) 95, 522, 558, 792, 1083, 1234, 1255, 1491
FokI GGATG 2 cut(s) 874, 1344
FriOI GRGCYC 2 cut(s) 30, 1306
Fsp4HI GCNGC 8 cut(s) 95, 522, 558, 792, 1083, 1234, 1255, 1491
FspBI CTAG 3 cut(s) 830, 933, 1507
GlaI GCGC 2 cut(s) 93, 454
GluI GCNGC 8 cut(s) 95, 522, 558, 792, 1083, 1234, 1255, 1491
GsaI CCCAGC 1 cut(s) 848
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 4 cut(s) 284, 387, 668, 1455
HapII CCGG 1 cut(s) 1262
HhaI GCGC 2 cut(s) 94, 455
Hin1II CATG 3 cut(s) 606, 1121, 1148
Hin6I GCGC 2 cut(s) 92, 453
HinP1I GCGC 2 cut(s) 92, 453
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 3 cut(s) 71, 373, 770
HpaII CCGG 1 cut(s) 1262
Hpy166II GTNNAC 5 cut(s) 181, 313, 629, 1034, 1123
Hpy188I TCNGA 7 cut(s) 191, 264, 777, 904, 952, 1107, 1129
Hpy188III TCNNGA 6 cut(s) 31, 44, 504, 731, 1262, 1292
Hpy8I GTNNAC 5 cut(s) 181, 313, 629, 1034, 1123
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 283, 905, 1390
HpyCH4III ACNGT 4 cut(s) 156, 490, 611, 1404
HpyCH4IV ACGT 1 cut(s) 709
HpyCH4V TGCA 5 cut(s) 497, 683, 921, 1236, 1254
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 554, 788, 1230, 1310
HpyF3I CTNAG 4 cut(s) 658, 763, 774, 1086
HpySE526I ACGT 1 cut(s) 709
Hsp92II CATG 3 cut(s) 606, 1121, 1148
HspAI GCGC 2 cut(s) 92, 453
Kpn2I TCCGGA 1 cut(s) 1261
Kzo9I GATC 8 cut(s) 33, 55, 186, 646, 952, 1207, 1419, 1447
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 4 cut(s) 33, 440, 1221, 1487
Lsp1109I GCAGC 6 cut(s) 106, 544, 1069, 1220, 1266, 1477
MaeI CTAG 3 cut(s) 830, 933, 1507
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 1 cut(s) 784
MalI GATC 8 cut(s) 35, 57, 188, 648, 954, 1209, 1421, 1449
MboI GATC 8 cut(s) 33, 55, 186, 646, 952, 1207, 1419, 1447
MflI RGATCY 2 cut(s) 55, 952
MhlI GDGCHC 2 cut(s) 30, 1306
MlsI TGGCCA 1 cut(s) 668
MluNI TGGCCA 1 cut(s) 668
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 442, 1248
Mox20I TGGCCA 1 cut(s) 668
MroI TCCGGA 1 cut(s) 1261
MscI TGGCCA 1 cut(s) 668
MseI TTAA 3 cut(s) 980, 1175, 1389
Msp20I TGGCCA 1 cut(s) 668
MspA1I CMGCKG 2 cut(s) 344, 1257
MspI CCGG 1 cut(s) 1262
MspR9I CCNGG 3 cut(s) 53, 171, 356
Mva1269I GAATGC 1 cut(s) 1084
MvaI CCWGG 3 cut(s) 53, 171, 356
MvnI CGCG 1 cut(s) 1417
MwoI GCNNNNNNNGC 5 cut(s) 25, 554, 788, 1230, 1310
NdeII GATC 8 cut(s) 33, 55, 186, 646, 952, 1207, 1419, 1447
NlaIII CATG 3 cut(s) 606, 1121, 1148
NlaIV GGNNCC 3 cut(s) 57, 386, 1223
NmeAIII GCCGAG 2 cut(s) 310, 1431
NspI RCATGY 2 cut(s) 606, 1148
PaeR7I CTCGAG 1 cut(s) 1480
PciSI GCTCTTC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PctI GAATGC 1 cut(s) 1084
PfeI GAWTC 2 cut(s) 373, 770
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 8 cut(s) 96, 523, 559, 793, 1084, 1235, 1256, 1492
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 710
Psp124BI GAGCTC 1 cut(s) 30
Psp6I CCWGG 3 cut(s) 51, 169, 354
PspFI CCCAGC 1 cut(s) 844
PspGI CCWGG 3 cut(s) 51, 169, 354
PspN4I GGNNCC 3 cut(s) 57, 386, 1223
PspPI GGNCC 1 cut(s) 385
PspXI VCTCGAGB 1 cut(s) 1480
PstI CTGCAG 2 cut(s) 499, 1238
PstNI CAGNNNCTG 4 cut(s) 494, 503, 956, 1328
PsuI RGATCY 2 cut(s) 55, 952
PvuII CAGCTG 1 cut(s) 1257
RsaI GTAC 7 cut(s) 323, 334, 407, 425, 628, 937, 1143
RsaNI GTAC 7 cut(s) 322, 333, 406, 424, 627, 936, 1142
SacI GAGCTC 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 980, 1175, 1389
SatI GCNGC 8 cut(s) 95, 522, 558, 792, 1083, 1234, 1255, 1491
Sau3AI GATC 8 cut(s) 33, 55, 186, 646, 952, 1207, 1419, 1447
Sau96I GGNCC 1 cut(s) 385
SbfI CCTGCAGG 1 cut(s) 499
ScaI AGTACT 1 cut(s) 937
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 53, 171, 356
SdaI CCTGCAGG 1 cut(s) 499
SduI GDGCHC 2 cut(s) 30, 1306
SfcI CTRYAG 2 cut(s) 495, 1234
Sfr274I CTCGAG 1 cut(s) 1480
SlaI CTCGAG 1 cut(s) 1480
SmlI CTYRAG 1 cut(s) 1480
SmoI CTYRAG 1 cut(s) 1480
Sse8387I CCTGCAGG 1 cut(s) 499
SsiI CCGC 6 cut(s) 342, 521, 791, 869, 1138, 1417
SspI AATATT 1 cut(s) 1285
SspMI CTAG 3 cut(s) 830, 933, 1507
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 51, 169, 354
StyI CCWWGG 2 cut(s) 1021, 1201
TaaI ACNGT 4 cut(s) 156, 490, 611, 1404
TaiI ACGT 1 cut(s) 712
TaqI TCGA 3 cut(s) 84, 1422, 1481
TaqII GACCGA 1 cut(s) 128
TatI WGTACW 2 cut(s) 332, 935
TauI GCSGC 2 cut(s) 524, 794
TfiI GAWTC 2 cut(s) 373, 770
Tru1I TTAA 3 cut(s) 980, 1175, 1389
Tru9I TTAA 3 cut(s) 980, 1175, 1389
TscAI CASTG 2 cut(s) 666, 1243
TseI GCWGC 6 cut(s) 94, 557, 1082, 1233, 1254, 1490
TspDTI ATGAA 3 cut(s) 385, 878, 1229
TspRI CASTG 2 cut(s) 666, 1243
Van91I CCANNNNNTGG 1 cut(s) 737
XapI RAATTY 5 cut(s) 122, 445, 571, 853, 1171
XceI RCATGY 2 cut(s) 606, 1148
XhoI CTCGAG 1 cut(s) 1480
XmiI GTMKAC 2 cut(s) 1033, 1122
XspI CTAG 3 cut(s) 830, 933, 1507
ZrmI AGTACT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.