Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014971

Physical Location & Seq

Genomic Coordinates Reverse (-)

2144384 .. 2145807

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTCTTATCAGCACACGGCGAACATTATCGACACTCCTAAACAAAACCCTCTCTTCCTCTACTTCATATTCTTCTTCATTTCCTACGCTCTCTTCTCGTTCTCGATTCGCCATGCCTCTAATTGAAAAGGTTTCCTCTTCCCGAACCAGCCTGGGCCCGTGTTACATCTCGACCCGACCCAAGACATCCGGGTCCGGATACTCGCCGCTGAATGATCCTTCGCCGAATTGGAGCAACCGTCCGCCGAAGGAGACGATTCTTCTTGATGGGTGCGATTATGAGCACTGGCTCATCGTCATGGAGTTCACTGATCCTAAACCTACTGAAGAAGAGATGATCAATTCTTATGTCAAAACCTTAACTTCCGTCCTTGGCTGGCAAGAAGAGGCCAAGAAGAAGATTTACTCTGTTTGTACTTCGACCTACACTGGCTTTGGTGCTTTGATCTCTGAAGAGCTCTCTTGCAAAGTCAAAGCATTGCCTGGTGTTCTCTGGGTGCTGCCGGATTCCTATCTCGATGTACCAAACAAAGACTACGGAGGTGACTTGTACGTTGAAGGAAAGGTCATACCCAGACCACAGTACAGGTTCACGGAACAGCGTCATACTAGACCCCGTCCTAGGCCAAGGTATGATAGGCGCCGTGAGACAATGCAGGTTGAGAGGAGAGAGCCATCCATGGGTCTTCATTCTCCAGTAAATCCGGGAGAGTTCAACAAGCCCAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.64

Weight (kDa)

9.2

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	94 - 183	2.1e-37	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06790 AT3G06790
fragaria_vesca	FvH4_4g18760
malus_domestica	MD16G1163100.v1.1
prunus_persica	Prupe.1G130500_v2.0.a1
pyrus_communis	pycom16g13820
rosa_chinensis	RchiOBHm_Chr4g0423551
rosa_laevigata	RLG00000007548
rosa_multiflora	Rmu_co8017616.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365780
rosa_rugosa	Rorug04G0188600
rosa_samantha	Rh4AG248100 Rh4BG253300 Rh4CG261300 Rh4DG248600
rosa_wichuraiana	Rw4G021250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	642
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	2 cut(s)	209, 245
AclWI	GGATC	2 cut(s)	212, 308
AcuI	CTGAAG	2 cut(s)	348, 474
AcyI	GRCGYC	1 cut(s)	643
AfaI	GTAC	4 cut(s)	418, 525, 554, 587
AfiI	CCNNNNNNNGG	2 cut(s)	624, 683
AgsI	TTSAA	3 cut(s)	128, 560, 718
AjnI	CCWGG	2 cut(s)	153, 484
AluBI	AGCT	1 cut(s)	460
AluI	AGCT	1 cut(s)	460
Alw21I	GWGCWC	2 cut(s)	288, 462
Alw26I	GTCTC	2 cut(s)	248, 644
AlwI	GGATC	2 cut(s)	212, 308
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	3 cut(s)	157, 390, 626
ApaI	GGGCCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	502
AspA2I	CCTAGG	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	3 cut(s)	157, 158, 195
AsuC2I	CCSGG	2 cut(s)	193, 708
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	195
AvrII	CCTAGG	1 cut(s)	623
BaeGI	GKGCMC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	642
BanII	GRGCYC	2 cut(s)	161, 462
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	2 cut(s)	288, 462
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	2 cut(s)	263, 685
BceAI	ACGGC	2 cut(s)	35, 630
BciT130I	CCWGG	2 cut(s)	155, 486
BciVI	GTATCC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	2 cut(s)	193, 708
BcoDI	GTCTC	2 cut(s)	248, 644
BfaI	CTAG	2 cut(s)	612, 624
BfoI	RGCGCY	1 cut(s)	646
BfuAI	ACCTGC	1 cut(s)	649
BfuI	GTATCC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	209, 503
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	2 cut(s)	210, 504
Bme1390I	CCNGG	4 cut(s)	155, 193, 486, 708
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	3 cut(s)	157, 158, 195
BmiI	GGNNCC	3 cut(s)	159, 196, 644
BmrFI	CCNGG	4 cut(s)	155, 193, 486, 708
BmrI	ACTGGG	1 cut(s)	720
BmuI	ACTGGG	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	681
BpuMI	CCSGG	2 cut(s)	193, 708
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	643
BsaJI	CCNNGG	5 cut(s)	154, 373, 623, 629, 681
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	624, 683
Bse1I	ACTGG	4 cut(s)	293, 436, 698, 726
Bse3DI	GCAATG	1 cut(s)	479
Bse8I	GATNNNNATC	1 cut(s)	513
BseAI	TCCGGA	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	155, 486
BseDI	CCNNGG	5 cut(s)	154, 373, 623, 629, 681
BseGI	GGATG	2 cut(s)	188, 677
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	624, 683
BseMI	GCAATG	1 cut(s)	479
BseNI	ACTGG	4 cut(s)	293, 436, 698, 726
BseRI	GAGGAG	1 cut(s)	682
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	489
BshFI	GGCC	3 cut(s)	159, 392, 628
BshNI	GGYRCC	1 cut(s)	642
BsiHKAI	GWGCWC	2 cut(s)	288, 462
BsiSI	CCGG	4 cut(s)	192, 198, 506, 707
BslI	CCNNNNNNNGG	2 cut(s)	624, 683
BsmAI	GTCTC	2 cut(s)	248, 644
BsmBI	CGTCTC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	159, 392, 628
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	3 cut(s)	161, 288, 462
Bsp13I	TCCGGA	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	217, 313, 339, 447
Bsp19I	CCATGG	1 cut(s)	681
BspACI	CCGC	2 cut(s)	209, 245
BspANI	GGCC	3 cut(s)	159, 392, 628
BspEI	TCCGGA	1 cut(s)	197
BspLI	GGNNCC	3 cut(s)	159, 196, 644
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	2 cut(s)	212, 308
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	642
BsrDI	GCAATG	1 cut(s)	479
BsrI	ACTGG	4 cut(s)	293, 436, 698, 726
BssECI	CCNNGG	5 cut(s)	154, 373, 623, 629, 681
BssMI	GATC	4 cut(s)	217, 313, 339, 447
BssNI	GRCGYC	1 cut(s)	643
BssT1I	CCWWGG	4 cut(s)	373, 623, 629, 681
Bst2UI	CCWGG	2 cut(s)	155, 486
Bst4CI	ACNGT	2 cut(s)	242, 585
Bst6I	CTCTTC	6 cut(s)	61, 100, 145, 327, 381, 450
BstACI	GRCGYC	1 cut(s)	643
BstC8I	GCNNGC	1 cut(s)	380
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	188, 677
BstH2I	RGCGCY	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	4 cut(s)	220, 316, 342, 450
BstMAI	GTCTC	2 cut(s)	248, 644
BstMBI	GATC	4 cut(s)	217, 313, 339, 447
BstNI	CCWGG	2 cut(s)	155, 486
BstSCI	CCNGG	4 cut(s)	153, 191, 484, 706
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	489
BstV2I	GAAGAC	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	159, 392, 628
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	2 cut(s)	188, 677
BtsIMutI	CAGTG	4 cut(s)	286, 309, 429, 733
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	380
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	3 cut(s)	157, 158, 195
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	4 cut(s)	417, 524, 553, 586
CviAII	CATG	3 cut(s)	115, 301, 682
CviQI	GTAC	4 cut(s)	417, 524, 553, 586
DinI	GGCGCC	1 cut(s)	644
DpnI	GATC	4 cut(s)	219, 315, 341, 449
DpnII	GATC	4 cut(s)	217, 313, 339, 447
DrdI	GACNNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	6 cut(s)	61, 100, 145, 327, 381, 450
EarI	CTCTTC	6 cut(s)	61, 100, 145, 327, 381, 450
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	4 cut(s)	373, 623, 629, 681
Eco24I	GRGCYC	2 cut(s)	161, 462
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	348, 474
EcoICRI	GAGCTC	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	153, 484
EcoT14I	CCWWGG	4 cut(s)	373, 623, 629, 681
EcoT38I	GRGCYC	2 cut(s)	161, 462
EgeI	GGCGCC	1 cut(s)	644
EheI	GGCGCC	1 cut(s)	644
ErhI	CCWWGG	4 cut(s)	373, 623, 629, 681
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	3 cut(s)	118, 304, 685
FaiI	YATR	9 cut(s)	70, 116, 282, 302, 351, 572, 609, 636, 683
FatI	CATG	3 cut(s)	114, 300, 681
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	209, 503
FokI	GGATG	2 cut(s)	175, 664
FriOI	GRGCYC	2 cut(s)	161, 462
Fsp4HI	GCNGC	2 cut(s)	209, 503
FspBI	CTAG	2 cut(s)	612, 624
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	2 cut(s)	209, 503
GsuI	CTGGAG	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	646
HaeIII	GGCC	3 cut(s)	159, 392, 628
HapII	CCGG	4 cut(s)	192, 198, 506, 707
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	643
Hin1II	CATG	3 cut(s)	118, 304, 685
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	108, 259, 509
HpaII	CCGG	4 cut(s)	192, 198, 506, 707
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	309, 594
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	6 cut(s)	105, 144, 172, 198, 266, 518
Hpy8I	GTNNAC	2 cut(s)	309, 594
HpyAV	CCTTC	3 cut(s)	231, 244, 554
HpyCH4III	ACNGT	2 cut(s)	242, 585
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	2 cut(s)	468, 658
HpySE526I	ACGT	1 cut(s)	555
Hsp92I	GRCGYC	1 cut(s)	643
Hsp92II	CATG	3 cut(s)	118, 304, 685
HspAI	GCGC	1 cut(s)	643
KasI	GGCGCC	1 cut(s)	642
Kpn2I	TCCGGA	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	217, 313, 339, 447
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	234
Lsp1109I	GCAGC	1 cut(s)	489
MaeI	CTAG	2 cut(s)	612, 624
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	2 cut(s)	164, 545
MalI	GATC	4 cut(s)	219, 315, 341, 449
MboI	GATC	4 cut(s)	217, 313, 339, 447
MhlI	GDGCHC	3 cut(s)	161, 288, 462
MluCI	AATT	3 cut(s)	123, 229, 343
Mly113I	GGCGCC	1 cut(s)	643
MnlI	CCTC	7 cut(s)	62, 70, 129, 148, 382, 536, 660
MroI	TCCGGA	1 cut(s)	197
MseI	TTAA	2 cut(s)	362, 733
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	4 cut(s)	192, 198, 506, 707
MspR9I	CCNGG	4 cut(s)	155, 193, 486, 708
MvaI	CCWGG	2 cut(s)	155, 486
NarI	GGCGCC	1 cut(s)	643
NciI	CCSGG	2 cut(s)	193, 708
NcoI	CCATGG	1 cut(s)	681
NdeII	GATC	4 cut(s)	217, 313, 339, 447
NlaIII	CATG	3 cut(s)	118, 304, 685
NlaIV	GGNNCC	3 cut(s)	159, 196, 644
NmuCI	GTSAC	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	108, 259, 509
PflFI	GACNNNGTC	1 cut(s)	618
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	2 cut(s)	210, 504
PluTI	GGCGCC	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	153, 484
PspGI	CCWGG	2 cut(s)	153, 484
PspN4I	GGNNCC	3 cut(s)	159, 196, 644
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	157, 158, 195
PsyI	GACNNNGTC	1 cut(s)	618
RsaI	GTAC	4 cut(s)	418, 525, 554, 587
RsaNI	GTAC	4 cut(s)	417, 524, 553, 586
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	362, 733
SatI	GCNGC	2 cut(s)	209, 503
Sau3AI	GATC	4 cut(s)	217, 313, 339, 447
Sau96I	GGNCC	3 cut(s)	157, 158, 195
ScrFI	CCNGG	4 cut(s)	155, 193, 486, 708
SduI	GDGCHC	3 cut(s)	161, 288, 462
SfoI	GGCGCC	1 cut(s)	644
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	123, 229, 343
SsiI	CCGC	2 cut(s)	209, 245
SspDI	GGCGCC	1 cut(s)	642
SspMI	CTAG	2 cut(s)	612, 624
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	4 cut(s)	153, 191, 484, 706
StyI	CCWWGG	4 cut(s)	373, 623, 629, 681
TaaI	ACNGT	2 cut(s)	242, 585
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	5 cut(s)	32, 106, 173, 422, 519
TasI	AATT	3 cut(s)	123, 229, 343
TatI	WGTACW	2 cut(s)	416, 585
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	3 cut(s)	108, 259, 509
Tru1I	TTAA	2 cut(s)	362, 733
Tru9I	TTAA	2 cut(s)	362, 733
TscAI	CASTG	4 cut(s)	293, 316, 436, 733
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	3 cut(s)	57, 69, 680
TspGWI	ACGGA	3 cut(s)	358, 555, 611
TspRI	CASTG	4 cut(s)	293, 316, 436, 733
Tth111I	GACNNNGTC	1 cut(s)	618
VpaK11BI	GGWCC	1 cut(s)	195
XmaJI	CCTAGG	1 cut(s)	623
XspI	CTAG	2 cut(s)	612, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.