FvH4_4g18760

protein At3g15000, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014971
Physical Location & Seq
Forward (+)
22590737 .. 22592357
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18760.t1

Sequence Viewer

Length: 672 bp
ATGGCCTACTCCGCCGCCCGGCGCACATTAGCCTCCGCCCTCACCCGAACCCTTTCCGCTCGTTCAAACCCCTCACTCTCTTCCCGCTCTCGCTTCGCTTCCGCTCTTCTCAACAACCAACAACCCTCCCTCGTTCCCGACCCGGTCCACTCCCAAACCCGCAAGCTTTCCGGGTCGGGTTACTCGCCCCTGAACGACACCTCTCCCAACTGGAACAACCGCCCGCCCAAGGAGACCATCCTCCTCGACGGCTGCGACTACGAGCACTGGCTCATCGTCCTCGAGTTCAGCGACCCTAAGCCCTCCGAGGAGGAGATGATCAATAGCTACGTCAAGACCCTAGCTTCGGTCGTCGGAAGTGAGGAGGAGGCCAAGAAGAAGATTTACTCGGTTTCGACGACGACCTACACTGGATTTGGGGCTTTGATTTCTGAAGAGCTTTCTCTCAAGGTTAAAGAGCAGCCTGGTGTTCTTTGGGTTTTGCCGGATTCGTACCTTGATGTGCCCAACAAAGATTATGGAGGGGATCTATATATCGATGGGAAAGTCATCCCCAGGCCACAGTATAGGTACACTGAGAGGCAAAATAACAGTCGAAACAGGCCTCGCCCACGACATGATAGACGCCGGGAAACAATGCCAGTTGAAAGAAGACAGCCAGTGCAAAAATAG

Protein Analysis

224

Amino Acids

25.31

Weight (kDa)

9.36

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 87 - 176 7.1e-37 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06790 AT3G06790
fragaria_vesca FvH4_4g18760
malus_domestica MD16G1163100.v1.1
prunus_persica Prupe.1G130500_v2.0.a1
pyrus_communis pycom16g13820
rosa_chinensis RchiOBHm_Chr4g0423551
rosa_laevigata RLG00000007548
rosa_multiflora Rmu_co8017616.1_g000001
rosa_roxburghii Rroxscaffold_5G00365780
rosa_rugosa Rorug04G0188600
rosa_samantha Rh4AG248100 Rh4BG253300 Rh4CG261300 Rh4DG248600
rosa_wichuraiana Rw4G021250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 59, 87, 104
AciI CCGC 9 cut(s) 12, 15, 36, 57, 85, 102, 160, 220, 224
AclWI GGATC 1 cut(s) 534
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 625
AfaI GTAC 2 cut(s) 494, 572
AfiI CCNNNNNNNGG 3 cut(s) 18, 229, 346
AgsI TTSAA 2 cut(s) 66, 647
AjnI CCWGG 2 cut(s) 463, 554
AluBI AGCT 4 cut(s) 166, 327, 344, 439
AluI AGCT 4 cut(s) 166, 327, 344, 439
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 534
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 4 cut(s) 3, 369, 557, 602
ApeKI GCWGC 2 cut(s) 252, 460
ArsI GACNNNNNNTTYG 4 cut(s) 328, 360, 577, 609
Asp700I GAANNNNTTC 1 cut(s) 52
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 4 cut(s) 19, 143, 172, 629
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 507
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
BbsI GAAGAC 1 cut(s) 658
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 239, 472
BccI CCATC 2 cut(s) 245, 533
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 2 cut(s) 465, 556
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 4 cut(s) 19, 143, 172, 629
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 341
BisI GCNGC 3 cut(s) 15, 253, 461
BlsI GCNGC 3 cut(s) 16, 254, 462
Bme1390I CCNGG 6 cut(s) 19, 143, 172, 465, 556, 629
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 6 cut(s) 19, 143, 172, 465, 556, 629
BpiI GAAGAC 1 cut(s) 658
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 4 cut(s) 19, 143, 172, 629
Bsa29I ATCGAT 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 625
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 228, 306, 554
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 229, 346
Bse1I ACTGG 5 cut(s) 215, 272, 415, 641, 659
BseBI CCWGG 2 cut(s) 465, 556
BseCI ATCGAT 1 cut(s) 537
BseDI CCNNGG 3 cut(s) 228, 306, 554
BseGI GGATG 2 cut(s) 237, 549
BseLI CCNNNNNNNGG 3 cut(s) 18, 229, 346
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 5 cut(s) 215, 272, 415, 641, 659
BseRI GAGGAG 5 cut(s) 233, 323, 326, 377, 380
BseSI GKGCMC 1 cut(s) 507
BseXI GCAGC 2 cut(s) 239, 472
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 4 cut(s) 5, 371, 559, 604
BshVI ATCGAT 1 cut(s) 537
BsiEI CGRYCG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 5 cut(s) 19, 143, 171, 485, 628
BslI CCNNNNNNNGG 3 cut(s) 18, 229, 346
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 4 cut(s) 5, 371, 559, 604
Bso31I GGTCTC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 267, 507
Bsp143I GATC 2 cut(s) 318, 526
BspACI CCGC 9 cut(s) 12, 15, 36, 57, 85, 102, 160, 220, 224
BspANI GGCC 4 cut(s) 5, 371, 559, 604
BspCNI CTCAG 1 cut(s) 568
BspDI ATCGAT 1 cut(s) 537
BspPI GGATC 1 cut(s) 534
BspQI GCTCTTC 2 cut(s) 111, 429
BspTNI GGTCTC 1 cut(s) 227
BsrBI CCGCTC 3 cut(s) 59, 87, 104
BsrI ACTGG 5 cut(s) 215, 272, 415, 641, 659
BssECI CCNNGG 3 cut(s) 228, 306, 554
BssMI GATC 2 cut(s) 318, 526
BssNI GRCGYC 1 cut(s) 625
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 465, 556
Bst4CI ACNGT 2 cut(s) 564, 593
Bst6I CTCTTC 3 cut(s) 85, 111, 429
BstACI GRCGYC 1 cut(s) 625
BstC8I GCNNGC 2 cut(s) 164, 224
BstDEI CTNAG 2 cut(s) 297, 576
BstF5I GGATG 2 cut(s) 237, 549
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 2 cut(s) 321, 529
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 318, 526
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 465, 556
BstSCI CCNGG 6 cut(s) 17, 141, 170, 463, 554, 627
BstSLI GKGCMC 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 239, 472
BstV2I GAAGAC 1 cut(s) 658
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
Bsu15I ATCGAT 1 cut(s) 537
BsuRI GGCC 4 cut(s) 5, 371, 559, 604
BsuTUI ATCGAT 1 cut(s) 537
BtsCI GGATG 2 cut(s) 237, 549
BtsIMutI CAGTG 4 cut(s) 265, 408, 573, 666
Cac8I GCNNGC 2 cut(s) 164, 224
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 537
CseI GACGC 1 cut(s) 633
Csp6I GTAC 2 cut(s) 493, 571
CviAII CATG 1 cut(s) 617
CviQI GTAC 2 cut(s) 493, 571
DdeI CTNAG 2 cut(s) 297, 576
DpnI GATC 2 cut(s) 320, 528
DpnII GATC 2 cut(s) 318, 526
Eam1104I CTCTTC 3 cut(s) 85, 111, 429
EarI CTCTTC 3 cut(s) 85, 111, 429
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 463, 554
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 620
FaiI YATR 5 cut(s) 519, 532, 534, 567, 618
FatI CATG 1 cut(s) 616
FauI CCCGC 3 cut(s) 92, 167, 231
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 15, 253, 461
FokI GGATG 2 cut(s) 224, 536
Fsp4HI GCNGC 3 cut(s) 15, 253, 461
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 23
GluI GCNGC 3 cut(s) 15, 253, 461
HaeIII GGCC 4 cut(s) 5, 371, 559, 604
HapII CCGG 5 cut(s) 19, 143, 171, 485, 628
HgaI GACGC 1 cut(s) 633
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 625
Hin1II CATG 1 cut(s) 620
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 488
HpaII CCGG 5 cut(s) 19, 143, 171, 485, 628
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 148, 573
Hpy188I TCNGA 3 cut(s) 307, 356, 433
Hpy188III TCNNGA 2 cut(s) 137, 334
Hpy8I GTNNAC 2 cut(s) 148, 573
Hpy99I CGWCG 4 cut(s) 251, 356, 400, 403
HpyCH4III ACNGT 2 cut(s) 564, 593
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 297, 576
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 625
Hsp92II CATG 1 cut(s) 620
HspAI GCGC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 2 cut(s) 318, 526
LguI GCTCTTC 2 cut(s) 111, 429
Lsp1109I GCAGC 2 cut(s) 239, 472
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 320, 528
MbiI CCGCTC 3 cut(s) 59, 87, 104
MboI GATC 2 cut(s) 318, 526
MboII GAAGA 6 cut(s) 72, 98, 388, 391, 446, 663
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 2 cut(s) 267, 507
MmeI TCCRAC 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 52
MseI TTAA 1 cut(s) 453
MspI CCGG 5 cut(s) 19, 143, 171, 485, 628
MspR9I CCNGG 6 cut(s) 19, 143, 172, 465, 556, 629
MvaI CCWGG 2 cut(s) 465, 556
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 4 cut(s) 19, 143, 172, 629
NdeII GATC 2 cut(s) 318, 526
NlaIII CATG 1 cut(s) 620
PaeR7I CTCGAG 1 cut(s) 281
PceI AGGCCT 1 cut(s) 604
PciSI GCTCTTC 2 cut(s) 111, 429
PcsI WCGNNNNNNNCGW 3 cut(s) 252, 288, 395
PdmI GAANNNNTTC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 488
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 16, 254, 462
Psp6I CCWGG 2 cut(s) 463, 554
PspGI CCWGG 2 cut(s) 463, 554
PspPI GGNCC 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 281
PsuI RGATCY 1 cut(s) 526
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 494, 572
RsaNI GTAC 2 cut(s) 493, 571
SapI GCTCTTC 2 cut(s) 111, 429
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 15, 253, 461
Sau3AI GATC 2 cut(s) 318, 526
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 6 cut(s) 19, 143, 172, 465, 556, 629
SduI GDGCHC 2 cut(s) 267, 507
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 281, 446
SmoI CTYRAG 2 cut(s) 281, 446
SseBI AGGCCT 1 cut(s) 604
SsiI CCGC 9 cut(s) 12, 15, 36, 57, 85, 102, 160, 220, 224
SspMI CTAG 1 cut(s) 341
StuI AGGCCT 1 cut(s) 604
StyD4I CCNGG 6 cut(s) 17, 141, 170, 463, 554, 627
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 564, 593
TaiI ACGT 1 cut(s) 333
TaqI TCGA 5 cut(s) 246, 282, 395, 537, 595
TaqII GACCGA 1 cut(s) 337
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 4 cut(s) 272, 415, 580, 666
TseI GCWGC 2 cut(s) 252, 460
TspRI CASTG 4 cut(s) 272, 415, 580, 666
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 52
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.