Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8017616.1

Orthogroup ID

OG0014971

Physical Location & Seq

Genomic Coordinates Reverse (-)

61 .. 444

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8017616.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggcgtactccgccgcccggcgcacattagcctccgccctcacgcgaaccctaacctcaacttccactcgttcaaacccctcgttctcctcccgctctcgcttcgctttggctcttctcaacaaccaacaaccccagctcgttcccgacccgggtcacctcccgacccgctccaagcattccgggtcgggttactcgcccctcaacgacgccactcccaactggaacaaccgcccgcccaaggagaccatcctcctcgacggctgcgactacgagcactggctcatcatcctcgagttcaacgacccaaagccctcggaggaggagatgatctacagctacgtcaaaaccctagcttcggtcgtcggaaggttcggtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.17

Weight (kDa)

8.85

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06790 AT3G06790
fragaria_vesca	FvH4_4g18760
malus_domestica	MD16G1163100.v1.1
prunus_persica	Prupe.1G130500_v2.0.a1
pyrus_communis	pycom16g13820
rosa_chinensis	RchiOBHm_Chr4g0423551
rosa_laevigata	RLG00000007548
rosa_multiflora	Rmu_co8017616.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365780
rosa_rugosa	Rorug04G0188600
rosa_samantha	Rh4AG248100 Rh4BG253300 Rh4CG261300 Rh4DG248600
rosa_wichuraiana	Rw4G021250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	96, 171
AccII	CGCG	1 cut(s)	46
AciI	CCGC	7 cut(s)	12, 15, 36, 94, 169, 232, 236
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	4 cut(s)	18, 152, 241, 358
AgsI	TTSAA	2 cut(s)	75, 301
AluBI	AGCT	3 cut(s)	139, 339, 356
AluI	AGCT	3 cut(s)	139, 339, 356
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	239
Ama87I	CYCGRG	2 cut(s)	151, 293
ApeKI	GCWGC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	24
AsuC2I	CCSGG	4 cut(s)	19, 152, 153, 184
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	151, 293
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	277
BcnI	CCSGG	4 cut(s)	19, 152, 153, 184
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	334
BisI	GCNGC	2 cut(s)	15, 265
BlsI	GCNGC	2 cut(s)	16, 266
Bme1390I	CCNGG	4 cut(s)	19, 152, 153, 184
BmeT110I	CYCGRG	2 cut(s)	151, 293
BmrFI	CCNGG	4 cut(s)	19, 152, 153, 184
BoxI	GACNNNNGTC	1 cut(s)	153
BpuMI	CCSGG	4 cut(s)	19, 152, 153, 184
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	151, 240, 315
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 152, 241, 358
Bse1I	ACTGG	2 cut(s)	227, 284
BseDI	CCNNGG	3 cut(s)	151, 240, 315
BseGI	GGATG	2 cut(s)	249, 288
BseLI	CCNNNNNNNGG	4 cut(s)	18, 152, 241, 358
BseNI	ACTGG	2 cut(s)	227, 284
BseRI	GAGGAG	4 cut(s)	79, 245, 335, 338
BseXI	GCAGC	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	2 cut(s)	151, 293
BsiSI	CCGG	3 cut(s)	19, 152, 183
BslI	CCNNNNNNNGG	4 cut(s)	18, 152, 241, 358
BsmAI	GTCTC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	2 cut(s)	151, 293
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	7 cut(s)	12, 15, 36, 94, 169, 232, 236
BspFNI	CGCG	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	239
BsrBI	CCGCTC	2 cut(s)	96, 171
BsrI	ACTGG	2 cut(s)	227, 284
BssECI	CCNNGG	3 cut(s)	151, 240, 315
BssMI	GATC	1 cut(s)	330
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	249, 288
BstFNI	CGCG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	330
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPAI	GACNNNNGTC	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	4 cut(s)	17, 150, 151, 182
BstSFI	CTRYAG	1 cut(s)	334
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	249, 288
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	1 cut(s)	24
Cfr9I	CCCGGG	1 cut(s)	151
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	7
CviJI	RGCY	8 cut(s)	32, 113, 139, 264, 283, 313, 339, 356
CviKI_1	RGCY	8 cut(s)	32, 113, 139, 264, 283, 313, 339, 356
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	239
Eco88I	CYCGRG	2 cut(s)	151, 293
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FauI	CCCGC	3 cut(s)	101, 176, 243
Fnu4HI	GCNGC	2 cut(s)	15, 265
FokI	GGATG	2 cut(s)	236, 275
Fsp4HI	GCNGC	2 cut(s)	15, 265
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	15, 265
GsaI	CCCAGC	1 cut(s)	139
HapII	CCGG	3 cut(s)	19, 152, 183
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HpaII	CCGG	3 cut(s)	19, 152, 183
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	319, 368
Hpy188III	TCNNGA	2 cut(s)	146, 163
Hpy99I	CGWCG	3 cut(s)	212, 263, 368
HpyAV	CCTTC	1 cut(s)	363
HpyCH4IV	ACGT	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	330
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	6 cut(s)	32, 149, 165, 196, 208, 265
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	155, 191
MalI	GATC	1 cut(s)	332
MbiI	CCGCTC	2 cut(s)	96, 171
MboI	GATC	1 cut(s)	330
MboII	GAAGA	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	346
MspI	CCGG	3 cut(s)	19, 152, 183
MspR9I	CCNGG	4 cut(s)	19, 152, 153, 184
Mva1269I	GAATGC	1 cut(s)	178
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	4 cut(s)	19, 152, 153, 184
NdeII	GATC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 300
PctI	GAATGC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	16, 266
PshAI	GACNNNNGTC	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	135
PspXI	VCTCGAGB	1 cut(s)	293
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	120
SatI	GCNGC	2 cut(s)	15, 265
Sau3AI	GATC	1 cut(s)	330
ScrFI	CCNGG	4 cut(s)	19, 152, 153, 184
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	7 cut(s)	59, 141, 162, 341, 345, 358, 374
SfcI	CTRYAG	1 cut(s)	334
Sfr274I	CTCGAG	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	293
SmaI	CCCGGG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	7 cut(s)	12, 15, 36, 94, 169, 232, 236
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	4 cut(s)	17, 150, 151, 182
StyI	CCWWGG	1 cut(s)	240
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	258, 294
TaqII	GACCGA	1 cut(s)	349
TauI	GCSGC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	155
TspMI	CCCGGG	1 cut(s)	151
TspRI	CASTG	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	293
XmaI	CCCGGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.