Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0014971

Physical Location & Seq

Genomic Coordinates Reverse (-)

9871442 .. 9872826

Gene Structure 1385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13820.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCATACGCCGCCGCCCGGCGCACATTAGCCTCGGCCCTCAGCCGAACCCTCGCTTCATCTTCCGCCTGTTCGAACTCCTCATTGTCCTCTCGCTCTCGCTTCGCCATCGCTCTCCTGAACAAACAACACGCCCAGCCCGTACCCGGTTCGGCGAACGTTCGGACCCTGTCCAGTAAATCCGGGTCGGGTTACTCTCCCCTGAACGACGCCTCTCCGAACTGGAGCAACCGCCCACCCAAGGAGACCATCCTCCTCGACGGCTGCGACTACGAGCACTGGCTCATCGTCATGGAGTTCGAAGACCCCAAGCCCTCCGAGGAGGAGATGATCAACTCCTACGTCAAAACCCTAGCCACCGTTCTCGGAAGTGAGGAGGAGGCGAAGAAGAAGATATACTCAGTTTCTACATCGACGTATACCGGATTTGGGGCTTTGATTTCTGAGGAGCTTTCTCTGAAGGTCAAAGGGCTGCCCGGTGTTCTATGGGTTTTGCCGGATTCATATCTCGATGTGCCCAACAAAGACTATGGAGGGGATCTATACATCGATGGGAAAGTCATTCCTAGACCACAGTATAGGTACAATGAAAGGCAACAACAAACTAGAAACAGGCCTCGTCCACGATATGATAGGCGCAGGGAAACAATGCAGGTTGAAAGGAGAGAGCCAATGCCAAGACGGATCATGGGCCAGGATCAGAAAGAGCCTGTGCAGCAAACAACTCAAAATGCAGCTCAGGGTGGAGGGACAGAGTTTAACAGGGGCAATGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

28.97

Weight (kDa)

9.24

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06790 AT3G06790
fragaria_vesca	FvH4_4g18760
malus_domestica	MD16G1163100.v1.1
prunus_persica	Prupe.1G130500_v2.0.a1
pyrus_communis	pycom16g13820
rosa_chinensis	RchiOBHm_Chr4g0423551
rosa_laevigata	RLG00000007548
rosa_multiflora	Rmu_co8017616.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365780
rosa_rugosa	Rorug04G0188600
rosa_samantha	Rh4AG248100 Rh4BG253300 Rh4CG261300 Rh4DG248600
rosa_wichuraiana	Rw4G021250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	419
AciI	CCGC	4 cut(s)	12, 15, 66, 232
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	3 cut(s)	546, 692, 705
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	2 cut(s)	144, 584
AfiI	CCNNNNNNNGG	4 cut(s)	18, 146, 241, 429
AgsI	TTSAA	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	2 cut(s)	451, 737
AluI	AGCT	2 cut(s)	451, 737
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	3 cut(s)	546, 692, 705
AoxI	GGCC	3 cut(s)	36, 614, 691
ApeKI	GCWGC	4 cut(s)	264, 472, 715, 734
AspLEI	GCGC	2 cut(s)	24, 639
AspS9I	GGNCC	3 cut(s)	37, 165, 691
AsuC2I	CCSGG	4 cut(s)	19, 147, 184, 477
AsuII	TTCGAA	2 cut(s)	74, 300
AvaII	GGWCC	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	4 cut(s)	251, 459, 727, 746
BccI	CCATC	3 cut(s)	116, 257, 545
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	4 cut(s)	19, 147, 184, 477
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	3 cut(s)	353, 567, 606
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	6 cut(s)	12, 15, 265, 473, 716, 735
BlsI	GCNGC	6 cut(s)	13, 16, 266, 474, 717, 736
Bme1390I	CCNGG	5 cut(s)	19, 147, 184, 477, 695
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	37, 165, 691
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	5 cut(s)	19, 147, 184, 477, 695
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	244
Bpu10I	CCTNAGC	2 cut(s)	41, 738
Bpu14I	TTCGAA	2 cut(s)	74, 300
BpuMI	CCSGG	4 cut(s)	19, 147, 184, 477
Bsa29I	ATCGAT	1 cut(s)	549
BsaBI	GATNNNNATC	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	33, 240, 318
BsaWI	WCCGGW	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 146, 241, 429
Bse1I	ACTGG	3 cut(s)	174, 227, 284
Bse3DI	GCAATG	1 cut(s)	775
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	695
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	3 cut(s)	33, 240, 318
BseGI	GGATG	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	4 cut(s)	18, 146, 241, 429
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	4 cut(s)	55, 414, 435, 752
BseNI	ACTGG	3 cut(s)	174, 227, 284
BseRI	GAGGAG	7 cut(s)	70, 245, 335, 338, 389, 392, 461
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	4 cut(s)	251, 459, 727, 746
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	734
BshFI	GGCC	3 cut(s)	38, 616, 693
BshVI	ATCGAT	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	6 cut(s)	19, 147, 183, 423, 477, 497
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	4 cut(s)	18, 146, 241, 429
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	763
BsnI	GGCC	3 cut(s)	38, 616, 693
Bso31I	GGTCTC	1 cut(s)	239
Bsp119I	TTCGAA	2 cut(s)	74, 300
Bsp1286I	GDGCHC	2 cut(s)	279, 519
Bsp143I	GATC	4 cut(s)	330, 538, 684, 697
BspACI	CCGC	4 cut(s)	12, 15, 66, 232
BspANI	GGCC	3 cut(s)	38, 616, 693
BspCNI	CTCAG	4 cut(s)	54, 413, 436, 751
BspDI	ATCGAT	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	167
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	3 cut(s)	546, 692, 705
BspT104I	TTCGAA	2 cut(s)	74, 300
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	775
BsrI	ACTGG	3 cut(s)	174, 227, 284
BssECI	CCNNGG	3 cut(s)	33, 240, 318
BssMI	GATC	4 cut(s)	330, 538, 684, 697
BssNAI	GTATAC	1 cut(s)	420
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	361, 576
BstACI	GRCGYC	1 cut(s)	210
BstBI	TTCGAA	2 cut(s)	74, 300
BstDEI	CTNAG	4 cut(s)	41, 400, 444, 738
BstF5I	GGATG	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	24, 639
BstKTI	GATC	4 cut(s)	333, 541, 687, 700
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	4 cut(s)	330, 538, 684, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 715
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	5 cut(s)	17, 145, 182, 475, 693
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	4 cut(s)	251, 459, 727, 746
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BstZ17I	GTATAC	1 cut(s)	420
Bsu15I	ATCGAT	1 cut(s)	549
BsuRI	GGCC	3 cut(s)	38, 616, 693
BsuTUI	ATCGAT	1 cut(s)	549
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	643
CfoI	GCGC	2 cut(s)	24, 639
Cfr13I	GGNCC	3 cut(s)	37, 165, 691
ClaI	ATCGAT	1 cut(s)	549
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	143, 583
CviAII	CATG	2 cut(s)	292, 688
CviQI	GTAC	2 cut(s)	143, 583
DdeI	CTNAG	4 cut(s)	41, 400, 444, 738
DpnI	GATC	4 cut(s)	332, 540, 686, 699
DpnII	GATC	4 cut(s)	330, 538, 684, 697
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	295, 691
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	2 cut(s)	291, 687
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	6 cut(s)	12, 15, 265, 473, 716, 735
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	6 cut(s)	12, 15, 265, 473, 716, 735
FspBI	CTAG	3 cut(s)	353, 567, 606
GlaI	GCGC	2 cut(s)	23, 638
GluI	GCNGC	6 cut(s)	12, 15, 265, 473, 716, 735
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	3 cut(s)	38, 616, 693
HapII	CCGG	6 cut(s)	19, 147, 183, 423, 477, 497
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	2 cut(s)	24, 639
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	295, 691
Hin6I	GCGC	2 cut(s)	22, 637
HinP1I	GCGC	2 cut(s)	22, 637
HinfI	GANTC	1 cut(s)	500
HpaII	CCGG	6 cut(s)	19, 147, 183, 423, 477, 497
Hpy166II	GTNNAC	2 cut(s)	420, 623
Hpy188I	TCNGA	7 cut(s)	165, 219, 319, 368, 445, 459, 702
Hpy188III	TCNNGA	2 cut(s)	118, 509
Hpy8I	GTNNAC	2 cut(s)	420, 623
Hpy99I	CGWCG	3 cut(s)	212, 263, 418
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	2 cut(s)	361, 576
HpyCH4IV	ACGT	3 cut(s)	159, 342, 416
HpyCH4V	TGCA	3 cut(s)	652, 715, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 715
HpyF3I	CTNAG	4 cut(s)	41, 400, 444, 738
HpySE526I	ACGT	3 cut(s)	159, 342, 416
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	295, 691
HspAI	GCGC	2 cut(s)	22, 637
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	330, 538, 684, 697
LmnI	GCTCC	2 cut(s)	225, 448
Lsp1109I	GCAGC	4 cut(s)	251, 459, 727, 746
MaeI	CTAG	3 cut(s)	353, 567, 606
MaeII	ACGT	3 cut(s)	159, 342, 416
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	4 cut(s)	332, 540, 686, 699
MboI	GATC	4 cut(s)	330, 538, 684, 697
MboII	GAAGA	5 cut(s)	54, 314, 397, 400, 403
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	279, 519
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	6 cut(s)	19, 147, 183, 423, 477, 497
MspR9I	CCNGG	5 cut(s)	19, 147, 184, 477, 695
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	11, 715
NciI	CCSGG	4 cut(s)	19, 147, 184, 477
NdeII	GATC	4 cut(s)	330, 538, 684, 697
NlaIII	CATG	2 cut(s)	295, 691
NlaIV	GGNNCC	1 cut(s)	167
NmeAIII	GCCGAG	1 cut(s)	14
NspV	TTCGAA	2 cut(s)	74, 300
PceI	AGGCCT	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 264
PfeI	GAWTC	1 cut(s)	500
PflFI	GACNNNGTC	1 cut(s)	169
PkrI	GCNGC	6 cut(s)	13, 16, 266, 474, 717, 736
Psp1406I	AACGTT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	693
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	3 cut(s)	37, 165, 691
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	169
RsaI	GTAC	2 cut(s)	144, 584
RsaNI	GTAC	2 cut(s)	143, 583
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	6 cut(s)	12, 15, 265, 473, 716, 735
Sau3AI	GATC	4 cut(s)	330, 538, 684, 697
Sau96I	GGNCC	3 cut(s)	37, 165, 691
ScrFI	CCNGG	5 cut(s)	19, 147, 184, 477, 695
SduI	GDGCHC	2 cut(s)	279, 519
SetI	ASST	8 cut(s)	162, 345, 419, 453, 465, 584, 657, 739
SfuI	TTCGAA	2 cut(s)	74, 300
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	4 cut(s)	12, 15, 66, 232
SspMI	CTAG	3 cut(s)	353, 567, 606
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	5 cut(s)	17, 145, 182, 475, 693
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	361, 576
TaiI	ACGT	3 cut(s)	162, 345, 419
TaqI	TCGA	6 cut(s)	74, 258, 300, 413, 510, 549
TauI	GCSGC	2 cut(s)	14, 17
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	1 cut(s)	284
TseI	GCWGC	4 cut(s)	264, 472, 715, 734
TspDTI	ATGAA	3 cut(s)	48, 492, 603
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	1 cut(s)	284
Tth111I	GACNNNGTC	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	419
XspI	CTAG	3 cut(s)	353, 567, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.