Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014971

Physical Location & Seq

Genomic Coordinates Reverse (-)

10140256 .. 10142008

Gene Structure 1753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCATACGCGGCCGCCCGGCGCACATTAGCCTCAGCCCTCAGCCGAACCCTCGCTTCAACTCATACCTGCTCAAAATCCTTCTCTTCTCGCTCTCGCTTCGCTGTGGCTCTTCTCAACAAACAGCAAACCCAGCTCCTACCCGACCTGGTGAACATCACGTACCGGTCCAAGCATTCAGGGCAGGGTTACTCGCCCCTGAACGACGCGACTCCAAACTGGAGTAACCGGCCGCCCAAGGAGACCATCCTCCTCGATGGCTGCGACTACGAGCACTGGCTCATTGTCATGGAGTACGACGACCCAAAGCCCTCCGAGGAGGAGATGATCAATTCCTACGTCAAAACCCTAGCCACCGTTCTCGGAAGTGAGGAGGAGGCGAAGAAGAAGATATACTCTGTTTCTACCACGACGTATACTGGATTTGGTGCTTTGATTTCTGAAGAGCTTTCTCTGAAGGTCAAAGGGTTGCCTGGTGTTCTCTGGGTTTTGCCGGATTCATATCTCGATGTTCCCAACAAAGATTATGGAGGGGATCTATATATCGATGGGAAAGTCATCCCAAGACCACAGTATAGGTACAATGAAAGGCAACAGCAAACTAGAAACAGGCCTCGTCCACGATATGATAGGCGTCGGGAGACAATGCAGGTTGAAAGGAGAGAGCCAATGCAAGGACAGAGCTTGGGCCAGGACAGGAGAGAGCCTGTGCAGCAAACAACACAAAGTTCCACTCAAGGTGGAGGGACAGGTTCCACCAGGAACCAAGGAGAGTTTAATAGGGGCAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.89

Weight (kDa)

9.21

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06790 AT3G06790
fragaria_vesca	FvH4_4g18760
malus_domestica	MD16G1163100.v1.1
prunus_persica	Prupe.1G130500_v2.0.a1
pyrus_communis	pycom16g13820
rosa_chinensis	RchiOBHm_Chr4g0423551
rosa_laevigata	RLG00000007548
rosa_multiflora	Rmu_co8017616.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365780
rosa_rugosa	Rorug04G0188600
rosa_samantha	Rh4AG248100 Rh4BG253300 Rh4CG261300 Rh4DG248600
rosa_wichuraiana	Rw4G021250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	77, 640
AccI	GTMKAC	1 cut(s)	416
AccII	CGCG	2 cut(s)	11, 209
AciI	CCGC	3 cut(s)	11, 15, 233
AclWI	GGATC	1 cut(s)	543
AcoI	YGGCCR	2 cut(s)	12, 230
AcuI	CTGAAG	2 cut(s)	462, 476
AcyI	GRCGYC	1 cut(s)	634
AfaI	GTAC	3 cut(s)	164, 296, 581
AfiI	CCNNNNNNNGG	1 cut(s)	674
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	60, 656
AjnI	CCWGG	4 cut(s)	147, 472, 690, 758
AluBI	AGCT	3 cut(s)	136, 448, 684
AluI	AGCT	3 cut(s)	136, 448, 684
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	2 cut(s)	236, 635
AlwI	GGATC	1 cut(s)	543
AoxI	GGCC	4 cut(s)	12, 230, 611, 688
ApeKI	GCWGC	2 cut(s)	261, 712
AsiGI	ACCGGT	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	168, 688
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
Bbv12I	GWGCWC	1 cut(s)	276
BbvCI	CCTCAGC	2 cut(s)	34, 41
BbvI	GCAGC	2 cut(s)	248, 724
BccI	CCATC	3 cut(s)	251, 254, 542
BciT130I	CCWGG	4 cut(s)	149, 474, 692, 760
BclI	TGATCA	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	236, 635
BfaI	CTAG	2 cut(s)	350, 603
BfuAI	ACCTGC	2 cut(s)	77, 640
BisI	GCNGC	5 cut(s)	12, 15, 233, 262, 713
BlsI	GCNGC	5 cut(s)	13, 16, 234, 263, 714
Bme1390I	CCNGG	5 cut(s)	19, 149, 474, 692, 760
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	168, 688
BmiI	GGNNCC	2 cut(s)	754, 764
BmrFI	CCNGG	5 cut(s)	19, 149, 474, 692, 760
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	2 cut(s)	34, 41
BpuEI	CTTGAG	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	546
BsaAI	YACGTR	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	634
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	237, 315, 766
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse118I	RCCGGY	2 cut(s)	165, 228
Bse1I	ACTGG	3 cut(s)	224, 281, 424
Bse3DI	GCAATG	1 cut(s)	793
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	4 cut(s)	149, 474, 692, 760
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	237, 315, 766
BseGI	GGATG	2 cut(s)	246, 558
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	2 cut(s)	48, 55
BseNI	ACTGG	3 cut(s)	224, 281, 424
BseRI	GAGGAG	5 cut(s)	242, 332, 335, 386, 389
BseX3I	CGGCCG	2 cut(s)	12, 230
BseXI	GCAGC	2 cut(s)	248, 724
BseYI	CCCAGC	1 cut(s)	132
BsgI	GTGCAG	1 cut(s)	731
Bsh1236I	CGCG	2 cut(s)	11, 209
Bsh1285I	CGRYCG	2 cut(s)	15, 233
BshFI	GGCC	4 cut(s)	14, 232, 613, 690
BshTI	ACCGGT	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	546
BsiEI	CGRYCG	2 cut(s)	15, 233
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	4 cut(s)	19, 166, 229, 494
BslFI	GGGAC	1 cut(s)	760
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmAI	GTCTC	2 cut(s)	236, 635
BsmFI	GGGAC	1 cut(s)	760
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	4 cut(s)	14, 232, 613, 690
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	327, 535
BspACI	CCGC	3 cut(s)	11, 15, 233
BspANI	GGCC	4 cut(s)	14, 232, 613, 690
BspCNI	CTCAG	2 cut(s)	47, 54
BspDI	ATCGAT	1 cut(s)	546
BspFNI	CGCG	2 cut(s)	11, 209
BspLI	GGNNCC	2 cut(s)	754, 764
BspMI	ACCTGC	2 cut(s)	77, 640
BspPI	GGATC	1 cut(s)	543
BspQI	GCTCTTC	2 cut(s)	117, 438
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	793
BsrFI	RCCGGY	2 cut(s)	165, 228
BsrI	ACTGG	3 cut(s)	224, 281, 424
BssAI	RCCGGY	2 cut(s)	165, 228
BssECI	CCNNGG	3 cut(s)	237, 315, 766
BssMI	GATC	2 cut(s)	327, 535
BssNAI	GTATAC	1 cut(s)	417
BssNI	GRCGYC	1 cut(s)	634
BssT1I	CCWWGG	2 cut(s)	237, 766
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	4 cut(s)	149, 474, 692, 760
Bst4CI	ACNGT	2 cut(s)	358, 573
Bst6I	CTCTTC	3 cut(s)	91, 117, 438
BstACI	GRCGYC	1 cut(s)	634
BstBAI	YACGTR	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	34, 41
BstF5I	GGATG	2 cut(s)	246, 558
BstFNI	CGCG	2 cut(s)	11, 209
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	2 cut(s)	330, 538
BstMAI	GTCTC	2 cut(s)	236, 635
BstMBI	GATC	2 cut(s)	327, 535
BstMCI	CGRYCG	2 cut(s)	15, 233
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 133, 181, 712
BstNI	CCWGG	4 cut(s)	149, 474, 692, 760
BstSCI	CCNGG	5 cut(s)	17, 147, 472, 690, 758
BstUI	CGCG	2 cut(s)	11, 209
BstV1I	GCAGC	2 cut(s)	248, 724
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BstZ17I	GTATAC	1 cut(s)	417
BstZI	CGGCCG	2 cut(s)	12, 230
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	4 cut(s)	14, 232, 613, 690
BsuTUI	ATCGAT	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	246, 558
BtsIMutI	CAGTG	1 cut(s)	274
BveI	ACCTGC	2 cut(s)	77, 640
CciNI	GCGGCCGC	1 cut(s)	12
CfoI	GCGC	1 cut(s)	24
Cfr10I	RCCGGY	2 cut(s)	165, 228
Cfr13I	GGNCC	2 cut(s)	168, 688
ClaI	ATCGAT	1 cut(s)	546
CseI	GACGC	2 cut(s)	215, 623
CsiI	ACCWGGT	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	163, 295, 580
CspAI	ACCGGT	1 cut(s)	165
CviAII	CATG	1 cut(s)	289
CviQI	GTAC	3 cut(s)	163, 295, 580
DdeI	CTNAG	2 cut(s)	34, 41
DpnI	GATC	2 cut(s)	329, 537
DpnII	GATC	2 cut(s)	327, 535
EaeI	YGGCCR	2 cut(s)	12, 230
EagI	CGGCCG	2 cut(s)	12, 230
Eam1104I	CTCTTC	3 cut(s)	91, 117, 438
EarI	CTCTTC	3 cut(s)	91, 117, 438
EclXI	CGGCCG	2 cut(s)	12, 230
Eco130I	CCWWGG	2 cut(s)	237, 766
Eco147I	AGGCCT	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	168
Eco52I	CGGCCG	2 cut(s)	12, 230
Eco57I	CTGAAG	2 cut(s)	462, 476
EcoRII	CCWGG	4 cut(s)	147, 472, 690, 758
EcoT14I	CCWWGG	2 cut(s)	237, 766
ErhI	CCWWGG	2 cut(s)	237, 766
FaeI	CATG	1 cut(s)	292
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	5 cut(s)	12, 15, 233, 262, 713
FokI	GGATG	2 cut(s)	233, 545
Fsp4HI	GCNGC	5 cut(s)	12, 15, 233, 262, 713
FspBI	CTAG	2 cut(s)	350, 603
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	5 cut(s)	12, 15, 233, 262, 713
GsaI	CCCAGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	4 cut(s)	14, 232, 613, 690
HapII	CCGG	4 cut(s)	19, 166, 229, 494
HgaI	GACGC	2 cut(s)	215, 623
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	211, 497
HpaII	CCGG	4 cut(s)	19, 166, 229, 494
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	3 cut(s)	154, 417, 620
Hpy188I	TCNGA	4 cut(s)	316, 365, 442, 456
Hpy188III	TCNNGA	2 cut(s)	506, 638
Hpy8I	GTNNAC	3 cut(s)	154, 417, 620
Hpy99I	CGWCG	4 cut(s)	209, 302, 415, 639
HpyAV	CCTTC	2 cut(s)	91, 451
HpyCH4III	ACNGT	2 cut(s)	358, 573
HpyCH4IV	ACGT	3 cut(s)	161, 339, 413
HpyCH4V	TGCA	3 cut(s)	649, 673, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 133, 181, 712
HpyF3I	CTNAG	2 cut(s)	34, 41
HpySE526I	ACGT	3 cut(s)	161, 339, 413
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	327, 535
LguI	GCTCTTC	2 cut(s)	117, 438
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	2 cut(s)	248, 724
MabI	ACCWGGT	1 cut(s)	147
MaeI	CTAG	2 cut(s)	350, 603
MaeII	ACGT	3 cut(s)	161, 339, 413
MaeIII	GTNAC	2 cut(s)	188, 224
MalI	GATC	2 cut(s)	329, 537
MboI	GATC	2 cut(s)	327, 535
MboII	GAAGA	6 cut(s)	78, 104, 394, 397, 400, 455
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	205
MseI	TTAA	2 cut(s)	777, 793
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	4 cut(s)	19, 166, 229, 494
MspR9I	CCNGG	5 cut(s)	19, 149, 474, 692, 760
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	4 cut(s)	149, 474, 692, 760
MvnI	CGCG	2 cut(s)	11, 209
MwoI	GCNNNNNNNGC	4 cut(s)	11, 133, 181, 712
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	327, 535
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	754, 764
NotI	GCGGCCGC	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	613
PciSI	GCTCTTC	2 cut(s)	117, 438
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	497
PinAI	ACCGGT	1 cut(s)	165
PkrI	GCNGC	5 cut(s)	13, 16, 234, 263, 714
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	162
Psp6I	CCWGG	4 cut(s)	147, 472, 690, 758
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	4 cut(s)	147, 472, 690, 758
PspN4I	GGNNCC	2 cut(s)	754, 764
PspPI	GGNCC	2 cut(s)	168, 688
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	3 cut(s)	164, 296, 581
RsaNI	GTAC	3 cut(s)	163, 295, 580
RseI	CAYNNNNRTG	1 cut(s)	287
SapI	GCTCTTC	2 cut(s)	117, 438
SaqAI	TTAA	2 cut(s)	777, 793
SatI	GCNGC	5 cut(s)	12, 15, 233, 262, 713
Sau3AI	GATC	2 cut(s)	327, 535
Sau96I	GGNCC	2 cut(s)	168, 688
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	5 cut(s)	19, 149, 474, 692, 760
SduI	GDGCHC	1 cut(s)	276
SexAI	ACCWGGT	1 cut(s)	147
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	1 cut(s)	331
SseBI	AGGCCT	1 cut(s)	613
SsiI	CCGC	3 cut(s)	11, 15, 233
SspMI	CTAG	2 cut(s)	350, 603
StuI	AGGCCT	1 cut(s)	613
StyD4I	CCNGG	5 cut(s)	17, 147, 472, 690, 758
StyI	CCWWGG	2 cut(s)	237, 766
TaaI	ACNGT	2 cut(s)	358, 573
TaiI	ACGT	3 cut(s)	164, 342, 416
TaqI	TCGA	3 cut(s)	255, 507, 546
TasI	AATT	1 cut(s)	331
TauI	GCSGC	3 cut(s)	14, 17, 235
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	2 cut(s)	777, 793
Tru9I	TTAA	2 cut(s)	777, 793
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	2 cut(s)	261, 712
TspDTI	ATGAA	2 cut(s)	489, 600
TspRI	CASTG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	416
XspI	CTAG	2 cut(s)	350, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.