Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009379

Physical Location & Seq

Genomic Coordinates Forward (+)

2423051 .. 2424594

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGCTCGTCAGGTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAGAATGGGACTGTGGTCCATGGAACCATCACTGGTGTTGATGTGAGCATGAACACTCACTTGAAGACAGTGAAGATGAGCCTGAAGGGGAAAAACCCAGTAACACTTGATCATCTTAGCTTGAGGGGTAATAATATTCGCTACTACATTCTTCCTGATAGCTTGAACCTCGAGACTTTACTTGTGGAAGACACTCCTAGAGTTAAACCTAAGAAGCCTGTTGCTGGGAAAGCTGTTGGACGCGGTCGCGGACGTGGCCGTGGGCGTGGTCGCGGCAGAGGTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0098588 GO:0098805 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

11.23

Isoelectric Point (pI)

11.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	5 - 43	3e-07	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07590 AT3G07590 AT3G07590 AT4G02840 AT4G02840
fragaria_vesca	FvH4_2g23760
malus_domestica	MD03G1267200.v1.1 MD11G1287700.v1.1
prunus_persica	Prupe.8G242900_v2.0.a1 Prupe.8G242900_v2.0.a1
pyrus_communis	pycom03g21340 pycom11g25510
rosa_chinensis	RchiOBHm_Chr6g0291251
rosa_laevigata	RLG00000012130
rosa_multiflora	Rmu_sc0029356.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176200
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329800 Rh6BG337000 Rh6CG343300 Rh6DG330400
rosa_wichuraiana	Rw6G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	300, 306, 330
AciI	CCGC	3 cut(s)	300, 306, 330
AcoI	YGGCCR	1 cut(s)	313
AcuI	CTGAAG	2 cut(s)	77, 161
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	121, 223
AjiI	CACGTC	1 cut(s)	311
AluBI	AGCT	5 cut(s)	7, 55, 177, 219, 290
AluI	AGCT	5 cut(s)	7, 55, 177, 219, 290
Alw26I	GTCTC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	73
BbsI	GAAGAC	2 cut(s)	128, 252
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	82
BmrI	ACTGGG	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	149
BoxI	GACNNNNGTC	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	128, 252
BpuEI	CTTGAG	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	76, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	94, 155
BseDI	CCNNGG	2 cut(s)	76, 316
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	94, 155
BseYI	CCCAGC	1 cut(s)	281
Bsh1236I	CGCG	3 cut(s)	300, 306, 330
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	3 cut(s)	300, 306, 330
BspANI	GGCC	1 cut(s)	315
BspFNI	CGCG	3 cut(s)	300, 306, 330
BspLI	GGNNCC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	94, 155
BssECI	CCNNGG	2 cut(s)	76, 316
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	3 cut(s)	43, 70, 127
BstDEI	CTNAG	2 cut(s)	173, 267
BstDSI	CCRYGG	2 cut(s)	76, 316
BstFNI	CGCG	3 cut(s)	300, 306, 330
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	166
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 312
BstPAI	GACNNNNGTC	1 cut(s)	71
BstUI	CGCG	3 cut(s)	300, 306, 330
BstV2I	GAAGAC	2 cut(s)	128, 252
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	2 cut(s)	76, 316
BtrI	CACGTC	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	87, 132
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	306
CviAII	CATG	2 cut(s)	77, 106
CviJI	RGCY	8 cut(s)	7, 55, 138, 177, 219, 274, 290, 315
CviKI_1	RGCY	8 cut(s)	7, 55, 138, 177, 219, 274, 290, 315
DdeI	CTNAG	2 cut(s)	173, 267
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	77, 161
Eco88I	CYCGRG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	80, 109
FaiI	YATR	2 cut(s)	78, 107
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	76, 105
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	315
HgaI	GACGC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	80, 109
Hpy188III	TCNNGA	2 cut(s)	212, 229
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	43, 70, 127
HpyCH4IV	ACGT	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 312
HpyF3I	CTNAG	2 cut(s)	173, 267
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	80, 109
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	75, 152, 168, 225, 267, 288
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	5 cut(s)	70, 133, 142, 200, 257
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	174, 236, 329
MseI	TTAA	2 cut(s)	29, 261
MvnI	CGCG	3 cut(s)	300, 306, 330
MwoI	GCNNNNNNNGC	2 cut(s)	287, 312
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	80, 109
NlaIV	GGNNCC	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	227
PflFI	GACNNNGTC	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	332
PshAI	GACNNNNGTC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	29, 261
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	73
Sfr274I	CTCGAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	178, 227
SmoI	CTYRAG	2 cut(s)	178, 227
SsiI	CCGC	3 cut(s)	300, 306, 330
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	43, 70, 127
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	51, 228
TauI	GCSGC	1 cut(s)	333
Tru1I	TTAA	2 cut(s)	29, 261
Tru9I	TTAA	2 cut(s)	29, 261
TscAI	CASTG	2 cut(s)	94, 132
TspDTI	ATGAA	4 cut(s)	17, 38, 51, 122
TspRI	CASTG	2 cut(s)	94, 132
Tth111I	GACNNNGTC	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	227
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.