Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009379

Physical Location & Seq

Genomic Coordinates Reverse (-)

54435553 .. 54438353

Gene Structure 2801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGACCGACAGCTTTTGGGGTGTCGTAAATTAGTCCCAGAAATTGATGTCGTTTGCTCAGCCTTGGCTACAACCCCCCGAGCCCTAAGGTTAAAATCAGCTAGTGCGGCACAGATAGATCCCACCCCCCACAACTCTCCCGCTTTGTTTTTGGAAAAGCTTGGAGCCCTAGCTCTCCAATTTCTCATCGCCACAATGAAGCTCGTCAGGTTCTTGATGAAGTTGAACAACGAAACCGTGTCGATCGAGCTCAAGAACGGCACCGTTGTGAATGGCACCATCACAGGTGTAGATATCAGTATGAATACACATTTGAAGACGGTGAAACTTACACTCAGGGGGAAGAATCCAGTGACTCTGGATCATCTCAGTGTGAGGGGTAACAATATTCGATACTACATCCTTCCTGACAGCTTGAATCTTGAGACTCTGCTGGTTGAAGAGACACCTAGGGTCAAACCCAAGAAGCCAACTGCAGGGAGGCCTGTGGGAAGGGGAAGGGGCCGTGGACGTGGACGCGGTCGTGGCCGTGGTGGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0098588 GO:0098805 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

180

Amino Acids

19.67

Weight (kDa)

10.94

Isoelectric Point (pI)

18.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	70 - 134	2.9e-17	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07590 AT3G07590 AT3G07590 AT4G02840 AT4G02840
fragaria_vesca	FvH4_2g23760
malus_domestica	MD03G1267200.v1.1 MD11G1287700.v1.1
prunus_persica	Prupe.8G242900_v2.0.a1 Prupe.8G242900_v2.0.a1
pyrus_communis	pycom03g21340 pycom11g25510
rosa_chinensis	RchiOBHm_Chr6g0291251
rosa_laevigata	RLG00000012130
rosa_multiflora	Rmu_sc0029356.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176200
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329800 Rh6BG337000 Rh6CG343300 Rh6DG330400
rosa_wichuraiana	Rw6G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	260, 275
AccII	CGCG	1 cut(s)	519
AciI	CCGC	3 cut(s)	107, 141, 519
AclWI	GGATC	2 cut(s)	113, 369
AcoI	YGGCCR	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	4 cut(s)	226, 316, 418, 440
AjiI	CACGTC	1 cut(s)	512
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	7 cut(s)	13, 101, 160, 173, 202, 250, 414
AluI	AGCT	7 cut(s)	13, 101, 160, 173, 202, 250, 414
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	419, 437
AlwI	GGATC	2 cut(s)	113, 369
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	3 cut(s)	482, 502, 526
AspA2I	CCTAGG	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	4, 502
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	449
AxyI	CCTNAGG	1 cut(s)	86
BanI	GGYRCC	2 cut(s)	260, 275
BanII	GRGCYC	3 cut(s)	85, 169, 252
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	3 cut(s)	274, 489, 513
BcoDI	GTCTC	2 cut(s)	419, 437
BfaI	CTAG	3 cut(s)	102, 170, 450
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	1 cut(s)	108
BlnI	CCTAGG	1 cut(s)	449
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	78
BmgBI	CACGTC	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	4, 502
BmiI	GGNNCC	4 cut(s)	166, 262, 277, 503
BpiI	GAAGAC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	236, 443
BsaJI	CCNNGG	4 cut(s)	63, 449, 505, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	350
Bse21I	CCTNAGG	1 cut(s)	86
BseDI	CCNNGG	4 cut(s)	63, 449, 505, 529
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	3 cut(s)	72, 349, 382
BseNI	ACTGG	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	519
Bsh1285I	CGRYCG	2 cut(s)	246, 523
BshFI	GGCC	3 cut(s)	484, 504, 528
BshNI	GGYRCC	2 cut(s)	260, 275
BsiEI	CGRYCG	2 cut(s)	246, 523
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	419, 437
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	484, 504, 528
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	85, 169, 252
Bsp143I	GATC	3 cut(s)	118, 243, 361
Bsp1720I	GCTNAGC	1 cut(s)	58
BspACI	CCGC	3 cut(s)	107, 141, 519
BspANI	GGCC	3 cut(s)	484, 504, 528
BspCNI	CTCAG	3 cut(s)	71, 348, 381
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	4 cut(s)	166, 262, 277, 503
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	2 cut(s)	113, 369
BspT107I	GGYRCC	2 cut(s)	260, 275
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	4 cut(s)	63, 449, 505, 529
BssMI	GATC	3 cut(s)	118, 243, 361
BssT1I	CCWWGG	2 cut(s)	63, 449
Bst4CI	ACNGT	3 cut(s)	238, 265, 322
Bst6I	CTCTTC	1 cut(s)	435
BstDEI	CTNAG	4 cut(s)	58, 86, 335, 368
BstDSI	CCRYGG	2 cut(s)	505, 529
BstF5I	GGATG	1 cut(s)	399
BstFNI	CGCG	1 cut(s)	519
BstKTI	GATC	3 cut(s)	121, 246, 364
BstMAI	GTCTC	2 cut(s)	419, 437
BstMBI	GATC	3 cut(s)	118, 243, 361
BstMCI	CGRYCG	2 cut(s)	246, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 525
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	484, 504, 528
BtgI	CCRYGG	2 cut(s)	505, 529
BtgZI	GCGATG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	357, 376
Cfr13I	GGNCC	2 cut(s)	4, 502
CseI	GACGC	1 cut(s)	525
DdeI	CTNAG	4 cut(s)	58, 86, 335, 368
DpnI	GATC	3 cut(s)	120, 245, 363
DpnII	GATC	3 cut(s)	118, 243, 361
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	63, 449
Eco147I	AGGCCT	1 cut(s)	484
Eco24I	GRGCYC	3 cut(s)	85, 169, 252
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	63, 449
EcoT38I	GRGCYC	3 cut(s)	85, 169, 252
ErhI	CCWWGG	2 cut(s)	63, 449
FaiI	YATR	1 cut(s)	302
FaqI	GGGAC	1 cut(s)	20
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	3 cut(s)	85, 169, 252
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	3 cut(s)	102, 170, 450
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	484, 504, 528
HgaI	GACGC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	4 cut(s)	346, 355, 418, 427
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	509, 515
Hpy188III	TCNNGA	5 cut(s)	214, 253, 359, 407, 422
Hpy8I	GTNNAC	2 cut(s)	509, 515
HpyAV	CCTTC	3 cut(s)	413, 486, 492
HpyCH4III	ACNGT	3 cut(s)	238, 265, 322
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 525
HpyF3I	CTNAG	4 cut(s)	58, 86, 335, 368
HpySE526I	ACGT	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	118, 243, 361
LmnI	GCTCC	1 cut(s)	164
MaeI	CTAG	3 cut(s)	102, 170, 450
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	2 cut(s)	352, 380
MalI	GATC	3 cut(s)	120, 245, 363
MboI	GATC	3 cut(s)	118, 243, 361
MboII	GAAGA	3 cut(s)	328, 355, 452
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	85, 169, 252
MluCI	AATT	3 cut(s)	29, 42, 179
MlyI	GAGTC	2 cut(s)	349, 421
MnlI	CCTC	2 cut(s)	369, 474
MseI	TTAA	2 cut(s)	92, 541
MslI	CAYNNNNRTG	2 cut(s)	266, 369
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	107, 525
NdeII	GATC	3 cut(s)	118, 243, 361
NlaIV	GGNNCC	4 cut(s)	166, 262, 277, 503
NmuCI	GTSAC	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	346, 418
PflFI	GACNNNGTC	1 cut(s)	519
PkrI	GCNGC	1 cut(s)	109
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	2 cut(s)	349, 421
PpsI	GAGTC	2 cut(s)	349, 421
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	4 cut(s)	166, 262, 277, 503
PspPI	GGNCC	2 cut(s)	4, 502
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	519
PvuI	CGATCG	1 cut(s)	246
RseI	CAYNNNNRTG	2 cut(s)	266, 369
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	92, 541
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	118, 243, 361
Sau96I	GGNCC	2 cut(s)	4, 502
SchI	GAGTC	2 cut(s)	349, 421
SduI	GDGCHC	3 cut(s)	85, 169, 252
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	266, 369
SmlI	CTYRAG	2 cut(s)	251, 422
SmoI	CTYRAG	2 cut(s)	251, 422
Sse9I	AATT	3 cut(s)	29, 42, 179
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	3 cut(s)	107, 141, 519
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	3 cut(s)	102, 170, 450
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	484
StyI	CCWWGG	2 cut(s)	63, 449
TaaI	ACNGT	3 cut(s)	238, 265, 322
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	3 cut(s)	242, 246, 391
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	3 cut(s)	29, 42, 179
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	346, 418
Tru1I	TTAA	2 cut(s)	92, 541
Tru9I	TTAA	2 cut(s)	92, 541
TscAI	CASTG	2 cut(s)	357, 376
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	3 cut(s)	212, 233, 317
TspRI	CASTG	2 cut(s)	357, 376
Tth111I	GACNNNGTC	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	4
XmaJI	CCTAGG	1 cut(s)	449
XspI	CTAG	3 cut(s)	102, 170, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.