Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009379

Physical Location & Seq

Genomic Coordinates Reverse (-)

28325972 .. 28326777

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTCCACATAAGCCCATCTTGCTGGCCGGTCCAGTAGTTAGACGGTATCTTACAAATTTGCCCCGATTTCGAGCCCTAAAGTTAAATCTTCCTGTGCGGCACACATACAGATCCCCCTCTCAGTCTCCCGCTTCGTTTGTTTGGTTGAAGAAGCTTCGAAGCCCTAGCTGTCATTTCTCTCTCTCTCTCGCCACAATGAAGCTCGTCAGGTTTTTGATGAAGTTGAACAACGAGACAGTGTCGATCGAGCTCAAAAACGGCACCGTTGTGAACGGAACCATCACGGTGAACGAAGCTGGGAGCTTTGTTCCCTCTGGAGATTTGTGCTCATCCGGTGCTACCATTTCGTATAAATGGACCATGTGGAAGCATTGCTCAAACATTGAGTCGGTGCGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0065003 GO:0071004 GO:0071010 GO:0071011 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

135

Amino Acids

14.99

Weight (kDa)

10.45

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07590 AT3G07590 AT3G07590 AT4G02840 AT4G02840
fragaria_vesca	FvH4_2g23760
malus_domestica	MD03G1267200.v1.1 MD11G1287700.v1.1
prunus_persica	Prupe.8G242900_v2.0.a1 Prupe.8G242900_v2.0.a1
pyrus_communis	pycom03g21340 pycom11g25510
rosa_chinensis	RchiOBHm_Chr6g0291251
rosa_laevigata	RLG00000012130
rosa_multiflora	Rmu_sc0029356.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176200
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329800 Rh6BG337000 Rh6CG343300 Rh6DG330400
rosa_wichuraiana	Rw6G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	2 cut(s)	100, 132
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	151, 229
AleI	CACNNNNGTG	1 cut(s)	269
AluBI	AGCT	6 cut(s)	157, 171, 205, 253, 299, 306
AluI	AGCT	6 cut(s)	157, 171, 205, 253, 299, 306
Alw21I	GWGCWC	2 cut(s)	255, 332
Alw26I	GTCTC	2 cut(s)	132, 230
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	1 cut(s)	374
AspS9I	GGNCC	3 cut(s)	5, 32, 360
AsuHPI	GGTGA	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	160
AvaII	GGWCC	3 cut(s)	5, 32, 360
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	79, 255
Bbv12I	GWGCWC	2 cut(s)	255, 332
BccI	CCATC	2 cut(s)	26, 290
BceAI	ACGGC	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	132, 230
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme18I	GGWCC	3 cut(s)	5, 32, 360
BmgT120I	GGNCC	3 cut(s)	5, 32, 360
BmiI	GGNNCC	3 cut(s)	6, 265, 280
BpmI	CTGGAG	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	255, 332
BsiSI	CCGG	2 cut(s)	30, 336
BsmAI	GTCTC	2 cut(s)	132, 230
BsnI	GGCC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	79, 255, 332
Bsp143I	GATC	2 cut(s)	113, 246
BspACI	CCGC	2 cut(s)	100, 132
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	6, 265, 280
BspPI	GGATC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	2 cut(s)	113, 246
Bst4CI	ACNGT	4 cut(s)	48, 241, 268, 289
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	2 cut(s)	116, 249
BstMAI	GTCTC	2 cut(s)	132, 230
BstMBI	GATC	2 cut(s)	113, 246
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	5, 32, 360
CviAII	CATG	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	115, 248
DpnII	GATC	2 cut(s)	113, 246
EaeI	YGGCCR	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	2 cut(s)	79, 255
Eco47I	GGWCC	3 cut(s)	5, 32, 360
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	79, 255
FaeI	CATG	1 cut(s)	367
FaiI	YATR	4 cut(s)	12, 109, 354, 365
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	1 cut(s)	363
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	2 cut(s)	79, 255
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	101
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	30, 336
Hin1II	CATG	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	30, 336
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	8, 274, 292
Hpy188III	TCNNGA	1 cut(s)	318
Hpy8I	GTNNAC	3 cut(s)	8, 274, 292
HpyCH4III	ACNGT	4 cut(s)	48, 241, 268, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	113, 246
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	8 cut(s)	11, 43, 48, 108, 196, 285, 303, 349
MaeI	CTAG	1 cut(s)	168
MalI	GATC	2 cut(s)	115, 248
MboI	GATC	2 cut(s)	113, 246
MboII	GAAGA	2 cut(s)	83, 163
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	3 cut(s)	79, 255, 332
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	2 cut(s)	130, 325
MseI	TTAA	2 cut(s)	86, 403
MslI	CAYNNNNRTG	2 cut(s)	269, 287
MspI	CCGG	2 cut(s)	30, 336
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	2 cut(s)	113, 246
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	3 cut(s)	6, 265, 280
NspV	TTCGAA	1 cut(s)	160
OliI	CACNNNNGTG	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	102
Ple19I	CGATCG	1 cut(s)	249
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	6, 265, 280
PspPI	GGNCC	3 cut(s)	5, 32, 360
PsuI	RGATCY	1 cut(s)	113
PsyI	GACNNNGTC	1 cut(s)	241
PvuI	CGATCG	1 cut(s)	249
RseI	CAYNNNNRTG	2 cut(s)	269, 287
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	86, 403
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	113, 246
Sau96I	GGNCC	3 cut(s)	5, 32, 360
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	3 cut(s)	79, 255, 332
SetI	ASST	7 cut(s)	159, 173, 207, 215, 255, 301, 308
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	3 cut(s)	5, 32, 360
SmiMI	CAYNNNNRTG	2 cut(s)	269, 287
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	100, 132
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	255
TaaI	ACNGT	4 cut(s)	48, 241, 268, 289
TaqI	TCGA	4 cut(s)	73, 160, 245, 249
TasI	AATT	1 cut(s)	58
TauI	GCSGC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	86, 403
Tru9I	TTAA	2 cut(s)	86, 403
TscAI	CASTG	1 cut(s)	246
TspDTI	ATGAA	2 cut(s)	215, 236
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	246
Tth111I	GACNNNGTC	1 cut(s)	241
VpaK11BI	GGWCC	3 cut(s)	5, 32, 360
XapI	RAATTY	1 cut(s)	58
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.