Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029356.1

Orthogroup ID

OG0009379

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1224

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029356.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 322 bp

atggaccgacagcttttggggtgtcgtaaagtagtcctagaaattgatgtcgtttgctcagccttggctacaaccccccgagccctaaggttaaaatcagctagtgcggcacagacagatccccccccccacaactctcccgctttgtttttggaaaagcttggagccctagctctccaatttctcatcgccacaatgaagcttgtcaggttcttgatgaagttgaacaacgaaaccgtgtcgatcgagctcaagaacggcaccgttgtgaatggcaccatcacaggtttccctctgctcctttctgaccgttttctctgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0098588 GO:0098805 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

107

Amino Acids

11.65

Weight (kDa)

9.3

Isoelectric Point (pI)

22.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07590 AT3G07590 AT3G07590 AT4G02840 AT4G02840
fragaria_vesca	FvH4_2g23760
malus_domestica	MD03G1267200.v1.1 MD11G1287700.v1.1
prunus_persica	Prupe.8G242900_v2.0.a1 Prupe.8G242900_v2.0.a1
pyrus_communis	pycom03g21340 pycom11g25510
rosa_chinensis	RchiOBHm_Chr6g0291251
rosa_laevigata	RLG00000012130
rosa_multiflora	Rmu_sc0029356.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176200
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329800 Rh6BG337000 Rh6CG343300 Rh6DG330400
rosa_wichuraiana	Rw6G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	260, 275
AciI	CCGC	2 cut(s)	107, 141
AclWI	GGATC	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	226
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	13, 101, 160, 173, 202, 250
AluI	AGCT	6 cut(s)	13, 101, 160, 173, 202, 250
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	86
BanI	GGYRCC	2 cut(s)	260, 275
BanII	GRGCYC	3 cut(s)	85, 169, 252
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	274
BfaI	CTAG	3 cut(s)	38, 102, 170
BisI	GCNGC	1 cut(s)	108
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	166, 262, 277
Bpu1102I	GCTNAGC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	63
Bse21I	CCTNAGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	246
BshNI	GGYRCC	2 cut(s)	260, 275
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	85, 169, 252
Bsp143I	GATC	2 cut(s)	118, 243
Bsp1720I	GCTNAGC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	107, 141
BspCNI	CTCAG	1 cut(s)	71
BspLI	GGNNCC	3 cut(s)	166, 262, 277
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	2 cut(s)	260, 275
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	118, 243
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	238, 265, 311
BstDEI	CTNAG	2 cut(s)	58, 86
BstKTI	GATC	2 cut(s)	121, 246
BstMBI	GATC	2 cut(s)	118, 243
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	58, 86
DpnI	GATC	2 cut(s)	120, 245
DpnII	GATC	2 cut(s)	118, 243
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	3 cut(s)	85, 169, 252
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	3 cut(s)	85, 169, 252
ErhI	CCWWGG	1 cut(s)	63
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	108
FriOI	GRGCYC	3 cut(s)	85, 169, 252
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	3 cut(s)	38, 102, 170
GluI	GCNGC	1 cut(s)	108
HindIII	AAGCTT	2 cut(s)	158, 200
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	214, 253
HpyCH4III	ACNGT	3 cut(s)	238, 265, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	58, 86
Kzo9I	GATC	2 cut(s)	118, 243
LmnI	GCTCC	2 cut(s)	164, 303
LpnPI	CCDG	2 cut(s)	193, 270
MaeI	CTAG	3 cut(s)	38, 102, 170
MalI	GATC	2 cut(s)	120, 245
MboI	GATC	2 cut(s)	118, 243
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	85, 169, 252
MluCI	AATT	2 cut(s)	42, 179
MnlI	CCTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	118, 243
NlaIV	GGNNCC	3 cut(s)	166, 262, 277
OliI	CACNNNNGTG	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	109
Ple19I	CGATCG	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	166, 262, 277
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	118, 243
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	3 cut(s)	85, 169, 252
SetI	ASST	9 cut(s)	15, 92, 103, 162, 175, 204, 212, 252, 289
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	42, 179
SsiI	CCGC	2 cut(s)	107, 141
SspMI	CTAG	3 cut(s)	38, 102, 170
SstI	GAGCTC	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	238, 265, 311
TaqI	TCGA	2 cut(s)	242, 246
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	42, 179
TauI	GCSGC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	212, 233
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	3 cut(s)	38, 102, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.