Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009379

Physical Location & Seq

Genomic Coordinates Reverse (-)

52729792 .. 52732384

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGCTCGTCAGGTTCTTGATGAAGTTGAACAACGAAACCGTGTCGATTGAGCTCAAGAACGGCACCGTTGTGAATGGCACCATCACAGGTGTAGATATCAGTATGAATACACATTTGAAGACGGTGAAACTTACACTCAGGGGGAAGAATCCAGTGACTCTGGATCATCTCAGTGTGAGGGGTAACAATATTCGATACTACATCCTTCCTGACAGCTTGAATCTTGAGACTCTACTGGTTGAAGAGACGCCTAGGGTCAAACCCAAGAAGCCAACTGCAGGGAGGCCTGTGGGAAGGGGAAGGGGCCGTGGACGTGGACGCGGTCGTGGCCGTGGTGGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0098588 GO:0098805 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

115

Amino Acids

12.73

Weight (kDa)

11.5

Isoelectric Point (pI)

10.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	5 - 69	9.8e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07590 AT3G07590 AT3G07590 AT4G02840 AT4G02840
fragaria_vesca	FvH4_2g23760
malus_domestica	MD03G1267200.v1.1 MD11G1287700.v1.1
prunus_persica	Prupe.8G242900_v2.0.a1 Prupe.8G242900_v2.0.a1
pyrus_communis	pycom03g21340 pycom11g25510
rosa_chinensis	RchiOBHm_Chr6g0291251
rosa_laevigata	RLG00000012130
rosa_multiflora	Rmu_sc0029356.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176200
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329800 Rh6BG337000 Rh6CG343300 Rh6DG330400
rosa_wichuraiana	Rw6G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 80
AccII	CGCG	1 cut(s)	324
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	31, 121, 223, 245
AjiI	CACGTC	1 cut(s)	317
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	7, 55, 219
AluI	AGCT	3 cut(s)	7, 55, 219
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	224, 242
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	3 cut(s)	287, 307, 331
AspA2I	CCTAGG	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	139
AvrII	CCTAGG	1 cut(s)	254
BanI	GGYRCC	2 cut(s)	65, 80
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	3 cut(s)	79, 294, 318
BcoDI	GTCTC	2 cut(s)	224, 242
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	279
BlnI	CCTAGG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	3 cut(s)	67, 82, 308
BpiI	GAAGAC	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	41, 248
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	254, 310, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	155, 243
BseDI	CCNNGG	3 cut(s)	254, 310, 334
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	154, 187
BseNI	ACTGG	2 cut(s)	155, 243
Bsh1236I	CGCG	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	289, 309, 333
BshNI	GGYRCC	2 cut(s)	65, 80
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	224, 242
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	289, 309, 333
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	3 cut(s)	289, 309, 333
BspCNI	CTCAG	2 cut(s)	153, 186
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	67, 82, 308
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	2 cut(s)	65, 80
BsrI	ACTGG	2 cut(s)	155, 243
BssECI	CCNNGG	3 cut(s)	254, 310, 334
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	43, 70, 127
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	140, 173
BstDSI	CCRYGG	2 cut(s)	310, 334
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	2 cut(s)	224, 242
BstMBI	GATC	1 cut(s)	166
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	128
BsuRI	GGCC	3 cut(s)	289, 309, 333
BtgI	CCRYGG	2 cut(s)	310, 334
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	162, 181
Cfr13I	GGNCC	1 cut(s)	307
CseI	GACGC	2 cut(s)	259, 330
CviJI	RGCY	7 cut(s)	7, 55, 219, 274, 289, 309, 333
CviKI_1	RGCY	7 cut(s)	7, 55, 219, 274, 289, 309, 333
DdeI	CTNAG	2 cut(s)	140, 173
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	254
Esp3I	CGTCTC	1 cut(s)	242
FaiI	YATR	1 cut(s)	107
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	289, 309, 333
HgaI	GACGC	2 cut(s)	259, 330
Hin1I	GRCGYC	1 cut(s)	251
HinfI	GANTC	4 cut(s)	151, 160, 223, 232
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	314, 320
Hpy188III	TCNNGA	5 cut(s)	19, 58, 164, 212, 227
Hpy8I	GTNNAC	2 cut(s)	314, 320
HpyAV	CCTTC	3 cut(s)	218, 291, 297
HpyCH4III	ACNGT	3 cut(s)	43, 70, 127
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	2 cut(s)	140, 173
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	8 cut(s)	75, 127, 149, 168, 224, 225, 267, 303
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	2 cut(s)	157, 185
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	133, 160, 257
MhlI	GDGCHC	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	154, 226
MnlI	CCTC	2 cut(s)	174, 279
MseI	TTAA	1 cut(s)	346
MslI	CAYNNNNRTG	2 cut(s)	71, 174
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	3 cut(s)	67, 82, 308
NmuCI	GTSAC	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	151, 223
PflFI	GACNNNGTC	1 cut(s)	324
PleI	GAGTC	2 cut(s)	154, 226
PpsI	GAGTC	2 cut(s)	154, 226
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	67, 82, 308
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	324
RseI	CAYNNNNRTG	2 cut(s)	71, 174
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	346
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	154, 226
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	6 cut(s)	9, 17, 57, 94, 221, 319
SfcI	CTRYAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	71, 174
SmlI	CTYRAG	2 cut(s)	56, 227
SmoI	CTYRAG	2 cut(s)	56, 227
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	3 cut(s)	43, 70, 127
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	47, 196
TfiI	GAWTC	2 cut(s)	151, 223
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TscAI	CASTG	2 cut(s)	162, 181
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	17, 38, 122
TspRI	CASTG	2 cut(s)	162, 181
Tth111I	GACNNNGTC	1 cut(s)	324
XmaJI	CCTAGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.