Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009379

Physical Location & Seq

Genomic Coordinates Reverse (-)

57012145 .. 57014197

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG337000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAGCTCGTCAGGTTCTTGATGAAGTTGAACAACGAAACCGTGTCGATCGAGCTCAAGAACGGCACCGTTGTGAATGGCACCATCACAGGTGTAGATATCAGTATGAATACACATTTGAAGACGGTGAAACTTACACTCAGGGGGAAGAATCCAGTGACTCTGGATCATCTCAGTGTGAGGGGTAACAATATTCGATACTACATCCTTCCTGACAGCTTGAATCTTGAGACTCTGCTGGTCGAAGAGACGCCTAGGGTCAAGCCCAAGAAGCCAACTGCAGGTACTACAAGCTTGTATTTGGCTTGGACACCTTCTCTTTTGAGCACATTGTTAATTTACGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0098588 GO:0098805 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

116

Amino Acids

12.98

Weight (kDa)

9.64

Isoelectric Point (pI)

13.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	5 - 69	1e-17	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07590 AT3G07590 AT3G07590 AT4G02840 AT4G02840
fragaria_vesca	FvH4_2g23760
malus_domestica	MD03G1267200.v1.1 MD11G1287700.v1.1
prunus_persica	Prupe.8G242900_v2.0.a1 Prupe.8G242900_v2.0.a1
pyrus_communis	pycom03g21340 pycom11g25510
rosa_chinensis	RchiOBHm_Chr6g0291251
rosa_laevigata	RLG00000012130
rosa_multiflora	Rmu_sc0029356.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176200
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329800 Rh6BG337000 Rh6CG343300 Rh6DG330400
rosa_wichuraiana	Rw6G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	65, 80
AclWI	GGATC	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	31, 121, 223
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	4 cut(s)	7, 55, 219, 294
AluI	AGCT	4 cut(s)	7, 55, 219, 294
Alw21I	GWGCWC	2 cut(s)	57, 329
Alw26I	GTCTC	2 cut(s)	224, 242
AlwI	GGATC	1 cut(s)	174
AspA2I	CCTAGG	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	139
AvrII	CCTAGG	1 cut(s)	254
BanI	GGYRCC	2 cut(s)	65, 80
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	2 cut(s)	57, 329
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	224, 242
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	272
BlnI	CCTAGG	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	67, 82
BpiI	GAAGAC	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	41, 248
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	154, 187
BseNI	ACTGG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	51
BshNI	GGYRCC	2 cut(s)	65, 80
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	57, 329
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	224, 242
BsmBI	CGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	57, 329
Bsp143I	GATC	3 cut(s)	48, 166, 343
BspCNI	CTCAG	2 cut(s)	153, 186
BspLI	GGNNCC	2 cut(s)	67, 82
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	2 cut(s)	65, 80
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	3 cut(s)	48, 166, 343
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	43, 70, 127
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	140, 173
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	3 cut(s)	51, 169, 346
BstMAI	GTCTC	2 cut(s)	224, 242
BstMBI	GATC	3 cut(s)	48, 166, 343
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	162, 181
BveI	ACCTGC	1 cut(s)	272
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	285
CviJI	RGCY	7 cut(s)	7, 55, 219, 265, 274, 294, 305
CviKI_1	RGCY	7 cut(s)	7, 55, 219, 265, 274, 294, 305
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	140, 173
DpnI	GATC	3 cut(s)	50, 168, 345
DpnII	GATC	3 cut(s)	48, 166, 343
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	254
Esp3I	CGTCTC	1 cut(s)	242
FaiI	YATR	1 cut(s)	107
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	4 cut(s)	151, 160, 223, 232
HphI	GGTGA	1 cut(s)	139
Hpy188III	TCNNGA	5 cut(s)	19, 58, 164, 212, 227
HpyAV	CCTTC	2 cut(s)	218, 324
HpyCH4III	ACNGT	3 cut(s)	43, 70, 127
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	2 cut(s)	140, 173
Hsp92I	GRCGYC	1 cut(s)	251
Kzo9I	GATC	3 cut(s)	48, 166, 343
LpnPI	CCDG	7 cut(s)	75, 127, 149, 168, 224, 225, 267
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	157, 185
MalI	GATC	3 cut(s)	50, 168, 345
MboI	GATC	3 cut(s)	48, 166, 343
MboII	GAAGA	3 cut(s)	133, 160, 257
MhlI	GDGCHC	2 cut(s)	57, 329
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	2 cut(s)	154, 226
MnlI	CCTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	71, 174
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	3 cut(s)	48, 166, 343
NlaIV	GGNNCC	2 cut(s)	67, 82
NmuCI	GTSAC	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	151, 223
Ple19I	CGATCG	1 cut(s)	51
PleI	GAGTC	2 cut(s)	154, 226
PpsI	GAGTC	2 cut(s)	154, 226
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	67, 82
PstI	CTGCAG	1 cut(s)	283
PvuI	CGATCG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	71, 174
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	335
Sau3AI	GATC	3 cut(s)	48, 166, 343
SchI	GAGTC	2 cut(s)	154, 226
SduI	GDGCHC	2 cut(s)	57, 329
SetI	ASST	8 cut(s)	9, 17, 57, 94, 221, 286, 296, 316
SfcI	CTRYAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	71, 174
SmlI	CTYRAG	2 cut(s)	56, 227
SmoI	CTYRAG	2 cut(s)	56, 227
Sse9I	AATT	1 cut(s)	336
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	3 cut(s)	43, 70, 127
TaqI	TCGA	4 cut(s)	47, 51, 196, 243
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	151, 223
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	162, 181
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	17, 38, 122
TspRI	CASTG	2 cut(s)	162, 181
XmaJI	CCTAGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.