Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009379

Physical Location & Seq

Genomic Coordinates Forward (+)

1264518 .. 1266486

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGGAACCATTGTTCATGGAACCATTACTGGTGTAGATGTTAGCATGAACACTCATTTAAAAGCTGTGAAACTCACTCTGAAAGGGAAGAATCCAGTTACATTAGACCACTTAAGTGTCAGGGGAAACAACATTCGCTATTATATTCTTCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTGAAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGGTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031047 GO:0031090 GO:0031323 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

116

Amino Acids

12.75

Weight (kDa)

11.23

Isoelectric Point (pI)

1.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	5 - 69	5.4e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07590 AT3G07590 AT3G07590 AT4G02840 AT4G02840
fragaria_vesca	FvH4_2g23760
malus_domestica	MD03G1267200.v1.1 MD11G1287700.v1.1
prunus_persica	Prupe.8G242900_v2.0.a1 Prupe.8G242900_v2.0.a1
pyrus_communis	pycom03g21340 pycom11g25510
rosa_chinensis	RchiOBHm_Chr6g0291251
rosa_laevigata	RLG00000012130
rosa_multiflora	Rmu_sc0029356.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176200
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329800 Rh6BG337000 Rh6CG343300 Rh6DG330400
rosa_wichuraiana	Rw6G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	272, 287
AccIII	TCCGGA	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflII	CTTAAG	2 cut(s)	56, 172
AgsI	TTSAA	4 cut(s)	31, 48, 223, 245
AjiI	CACGTC	2 cut(s)	308, 332
AleI	CACNNNNGTG	1 cut(s)	174
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	3 cut(s)	7, 55, 125
AluI	AGCT	3 cut(s)	7, 55, 125
Alw26I	GTCTC	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	252
BceAI	ACGGC	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	279
BfrI	CTTAAG	2 cut(s)	56, 172
BfuAI	ACCTGC	2 cut(s)	272, 287
BmgBI	CACGTC	2 cut(s)	308, 332
BmiI	GGNNCC	2 cut(s)	67, 82
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	337
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	94, 155
BseAI	TCCGGA	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	94, 155
BshFI	GGCC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	211
BspANI	GGCC	1 cut(s)	336
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	67, 82
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	2 cut(s)	272, 287
BspTI	CTTAAG	2 cut(s)	56, 172
BsrI	ACTGG	2 cut(s)	94, 155
BssECI	CCNNGG	1 cut(s)	337
Bst4CI	ACNGT	2 cut(s)	43, 218
Bst6I	CTCTTC	1 cut(s)	313
BstAFI	CTTAAG	2 cut(s)	56, 172
BstDSI	CCRYGG	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	2 cut(s)	308, 332
BveI	ACCTGC	2 cut(s)	272, 287
CviAII	CATG	2 cut(s)	77, 106
CviJI	RGCY	5 cut(s)	7, 55, 125, 274, 336
CviKI_1	RGCY	5 cut(s)	7, 55, 125, 274, 336
DraI	TTTAAA	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
FaeI	CATG	2 cut(s)	80, 109
FaiI	YATR	3 cut(s)	78, 107, 204
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	76, 105
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	2 cut(s)	80, 109
HinfI	GANTC	4 cut(s)	151, 223, 258, 289
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	212, 227
Hpy8I	GTNNAC	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	43, 218
HpyCH4IV	ACGT	2 cut(s)	307, 331
HpyCH4V	TGCA	1 cut(s)	281
HpySE526I	ACGT	2 cut(s)	307, 331
Hsp92II	CATG	2 cut(s)	80, 109
Kpn2I	TCCGGA	1 cut(s)	211
LpnPI	CCDG	9 cut(s)	75, 166, 168, 212, 224, 225, 267, 282, 306
MaeII	ACGT	2 cut(s)	307, 331
MaeIII	GTNAC	1 cut(s)	157
MboII	GAAGA	4 cut(s)	160, 200, 257, 330
MluCI	AATT	1 cut(s)	26
MnlI	CCTC	1 cut(s)	314
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	4 cut(s)	57, 119, 173, 349
MslI	CAYNNNNRTG	1 cut(s)	174
MspCI	CTTAAG	2 cut(s)	56, 172
MspI	CCGG	1 cut(s)	212
NlaIII	CATG	2 cut(s)	80, 109
NlaIV	GGNNCC	2 cut(s)	67, 82
OliI	CACNNNNGTG	1 cut(s)	174
PfeI	GAWTC	4 cut(s)	151, 223, 258, 289
PflFI	GACNNNGTC	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	67, 82
PstI	CTGCAG	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	57, 119, 173, 349
SetI	ASST	9 cut(s)	9, 17, 57, 127, 286, 301, 310, 325, 334
SfcI	CTRYAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	2 cut(s)	56, 172
SmoI	CTYRAG	2 cut(s)	56, 172
Sse9I	AATT	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	43, 218
TaiI	ACGT	2 cut(s)	310, 334
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	26
TfiI	GAWTC	4 cut(s)	151, 223, 258, 289
Tru1I	TTAA	4 cut(s)	57, 119, 173, 349
Tru9I	TTAA	4 cut(s)	57, 119, 173, 349
TspDTI	ATGAA	4 cut(s)	17, 38, 65, 122
TspGWI	ACGGA	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	309
Vha464I	CTTAAG	2 cut(s)	56, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.