AT3G07790

Nuclear protein Es2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010388
Physical Location & Seq
Forward (+)
2487313 .. 2489386
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07790.1

Sequence Viewer

Length: 1527 bp
ATGTTTCTTTCACCTGGTCATTCTCCTCGTCAGATTTCTTCTCCATCGCCGTCTTCTTATTCCGATGATACCCTCCGATCAACGCCTCGCAGTTCTTCCTCGGAGATCATTCCTCGAAACCCTAGAAAACGGATGAGAGTTCTCGATGAGGACGCTTATGTTGAAGCAATCGAGAAGATCATCGAGCGTGATTACTTTCCAGATATAACTAAGCTTAGGGATCGGCTCGATTGGATCCAAGCGGTGAAAACCCGTGACCCGATTCAAATCCGAGATGCCCAGTTGAAGATTATCGAGAGGCGTGGAAAGAAGGCGAATCATCATGTTGGAGATACCGAGGGTAAAACTCAAACTCCTGGATCTACTTTTCTGAGAAATTTCACTCCTTTAGATGAATTTGATGGTAAAACCCCTAGAACTCCTGGAGTATCTGGTAGAGAATTTCATGGTGTTGAAGTAGATGCTGGTGATGGAGATGAAGATATAGATCTTAATTTGTCCCTAGATGAGTTCTTTAGGAGATATACTAGTGAGGATAACGAGAGCTTTTCGAAGATTCTTGAGAAGGTAAATAGGAAGAAGAAGGAGAAGTATGGCTTTCTCCTTGAAGGTGAAAAGGAGGATGGTAAATCTATTGAGGATGTGAAGAGAGATAGGATTACAGATGGGTATGGTACATCTGATCAGCCACCGAGTACTTTAGAAGGATGGAAATATACGGCGAAGAATCTTCTGATGTACCATCCAGCTGATCGGGGTGAGGCGCCTTTAACTGAGGCGGAAAGGGCAGTGAGATTACTTGGATTGACTAAGGAGATAGTTAAAGGGAACACTCGTTTTCATGGTAAGACTATGGATTCTAGGCCAAGAGAAGATGGTTCTGTTGAGATTCTCTACACTCCAATCGCAGGTTCTTCCCCGATGCATATCTCAGGTAGGGACAGAGACAAGTCTAAAAGGTATGATCTTGATGATCTAAGGAAAACACCGAATCCTTTCTATGTGGAATCAGATAAGAGGGCAGACAATGGGTATAGTTTTGTTAGAACGCCTTCTCCTGCTCCAGGTCTTGATGAATCACCCTTTATAACATGGGGTGAGATTGATGGGACACCAATGCGATTAGATCTTGAGGATACACCTATTGATATTGGTGGTAGTGCTGATGGACCGCACTATAACATTCCATCTGCACCTCCTAGAGATGTAAGGGCACATTCATTATCAAGGGATGCATCGCGAAAACTTAGAGAGAGATCGAATAGTATGTTTAAGAAACCTCCGTTGCCATCTCCTCATCGAAGTGGAAGTGCAAGTCCGAATGTTAGGACTCTTTCACCCGCTGCTCAGAAGTTTTTCAGAAAGGCAATAGCTAAATCATCTTCTACTGTTGATGAGAGCCTTCGTGCAAGTTATCGTGGAGCAAGTCCTCGTGGAGCAAGTCCTGGTGCTGTGACTCCTAAGAGTGTGAGAAGTATTTCAAGATTTGGCAAAGATGGGACCAGCTCAGAGACAAGGTCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Es2

Protein Analysis

508

Amino Acids

56.81

Weight (kDa)

9.05

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Es2 PF09751 45 - 452 1.2e-107 Nuclear protein Es2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1088
Acc36I ACCTGC 1 cut(s) 899
AccB1I GGYRCC 1 cut(s) 763
AccII CGCG 1 cut(s) 1240
AciI CCGC 4 cut(s) 242, 779, 1172, 1341
AclWI GGATC 4 cut(s) 228, 229, 242, 367
AcsI RAATTY 3 cut(s) 376, 395, 440
AcyI GRCGYC 1 cut(s) 764
AfaI GTAC 3 cut(s) 676, 697, 740
AfiI CCNNNNNNNGG 2 cut(s) 908, 1064
AgsI TTSAA 6 cut(s) 164, 266, 286, 455, 608, 1482
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 5 cut(s) 13, 355, 421, 1063, 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 895, 927
AloI GAACNNNNNNTCC 2 cut(s) 1039, 1071
AluBI AGCT 5 cut(s) 214, 546, 749, 1373, 1506
AluI AGCT 5 cut(s) 214, 546, 749, 1373, 1506
Alw26I GTCTC 2 cut(s) 939, 1505
AlwI GGATC 4 cut(s) 228, 229, 242, 367
AoxI GGCC 1 cut(s) 863
ApeKI GCWGC 1 cut(s) 1343
ApoI RAATTY 3 cut(s) 376, 395, 440
Asp700I GAANNNNTTC 4 cut(s) 995, 1051, 1355, 1477
AspLEI GCGC 1 cut(s) 766
AspS9I GGNCC 2 cut(s) 1169, 1500
AsuHPI GGTGA 8 cut(s) 3, 256, 479, 623, 770, 1071, 1109, 1329
AsuII TTCGAA 1 cut(s) 551
AvaII GGWCC 2 cut(s) 1169, 1500
BaeGI GKGCMC 1 cut(s) 1216
BamHI GGATCC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 763
BauI CACGAG 1 cut(s) 1431
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 1330
BceAI ACGGC 2 cut(s) 34, 735
BciT130I CCWGG 5 cut(s) 15, 357, 423, 1065, 1446
BciVI GTATCC 1 cut(s) 1129
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 2 cut(s) 939, 1505
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 6 cut(s) 123, 414, 503, 528, 861, 1200
BfoI RGCGCY 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 899
BfuI GTATCC 1 cut(s) 1129
BglII AGATCT 2 cut(s) 487, 1126
BisI GCNGC 1 cut(s) 1344
BlsI GCNGC 1 cut(s) 1345
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 5 cut(s) 15, 357, 423, 1065, 1446
Bme18I GGWCC 2 cut(s) 1169, 1500
BmgT120I GGNCC 2 cut(s) 1169, 1500
BmiI GGNNCC 3 cut(s) 236, 765, 1501
BmrFI CCNGG 5 cut(s) 15, 357, 423, 1065, 1446
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 5 cut(s) 265, 451, 912, 1222, 1244
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 2 cut(s) 444, 1047
Bpu10I CCTNAGC 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 581, 1151
BsaBI GATNNNNATC 3 cut(s) 266, 486, 926
BsaHI GRCGYC 1 cut(s) 764
BsaJI CCNNGG 2 cut(s) 99, 336
BsaXI ACNNNNNCTCC 4 cut(s) 337, 367, 1039, 1069
Bsc4I CCNNNNNNNGG 2 cut(s) 908, 1064
Bse1I ACTGG 1 cut(s) 280
Bse8I GATNNNNATC 3 cut(s) 266, 486, 926
BseBI CCWGG 5 cut(s) 15, 357, 423, 1065, 1446
BseDI CCNNGG 2 cut(s) 99, 336
BseGI GGATG 6 cut(s) 138, 628, 646, 713, 742, 1237
BseJI GATNNNNATC 3 cut(s) 266, 486, 926
BseLI CCNNNNNNNGG 2 cut(s) 908, 1064
BseMII CTCAG 5 cut(s) 362, 765, 945, 1361, 1521
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 2 cut(s) 15, 1284
BseSI GKGCMC 1 cut(s) 1216
BseXI GCAGC 1 cut(s) 1330
BsgI GTGCAG 1 cut(s) 1176
Bsh1236I CGCG 1 cut(s) 1240
BshFI GGCC 1 cut(s) 865
BshNI GGYRCC 1 cut(s) 763
BslFI GGGAC 4 cut(s) 484, 953, 1123, 1513
BslI CCNNNNNNNGG 2 cut(s) 908, 1064
BsmAI GTCTC 2 cut(s) 939, 1505
BsmFI GGGAC 4 cut(s) 484, 953, 1123, 1513
BsnI GGCC 1 cut(s) 865
Bsp119I TTCGAA 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 1216
Bsp68I TCGCGA 1 cut(s) 1240
BspACI CCGC 4 cut(s) 242, 779, 1172, 1341
BspANI GGCC 1 cut(s) 865
BspCNI CTCAG 5 cut(s) 363, 766, 944, 1360, 1520
BspFNI CGCG 1 cut(s) 1240
BspLI GGNNCC 3 cut(s) 236, 765, 1501
BspMI ACCTGC 1 cut(s) 899
BspPI GGATC 4 cut(s) 228, 229, 242, 367
BspT104I TTCGAA 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 763
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 99, 336
BssNI GRCGYC 1 cut(s) 764
BssSI CACGAG 1 cut(s) 1431
Bst2BI CACGAG 1 cut(s) 1431
Bst2UI CCWGG 5 cut(s) 15, 357, 423, 1065, 1446
Bst4CI ACNGT 1 cut(s) 1390
Bst6I CTCTTC 1 cut(s) 641
BstACI GRCGYC 1 cut(s) 764
BstBI TTCGAA 1 cut(s) 551
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 6 cut(s) 138, 628, 646, 713, 742, 1237
BstFNI CGCG 1 cut(s) 1240
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 1 cut(s) 766
BstMAI GTCTC 2 cut(s) 939, 1505
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNI CCWGG 5 cut(s) 15, 357, 423, 1065, 1446
BstSCI CCNGG 5 cut(s) 13, 355, 421, 1063, 1444
BstSLI GKGCMC 1 cut(s) 1216
BstUI CGCG 1 cut(s) 1240
BstV1I GCAGC 1 cut(s) 1330
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 4 cut(s) 234, 359, 487, 1126
BstYI RGATCY 4 cut(s) 234, 359, 487, 1126
BsuI GTATCC 1 cut(s) 1129
BsuRI GGCC 1 cut(s) 865
BtgZI GCGATG 2 cut(s) 30, 1221
BtsCI GGATG 6 cut(s) 138, 628, 646, 713, 742, 1237
BtsI GCAGTG 1 cut(s) 795
BtsIMutI CAGTG 1 cut(s) 795
BtuMI TCGCGA 1 cut(s) 1240
BveI ACCTGC 1 cut(s) 899
CfoI GCGC 1 cut(s) 766
Cfr13I GGNCC 2 cut(s) 1169, 1500
CseI GACGC 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 13
Csp6I GTAC 3 cut(s) 675, 696, 739
CviAII CATG 4 cut(s) 323, 446, 842, 1092
CviQI GTAC 3 cut(s) 675, 696, 739
DinI GGCGCC 1 cut(s) 765
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
EciI GGCGGA 1 cut(s) 794
Eco47I GGWCC 2 cut(s) 1169, 1500
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoRII CCWGG 5 cut(s) 13, 355, 421, 1063, 1444
EcoT22I ATGCAT 2 cut(s) 927, 1237
EgeI GGCGCC 1 cut(s) 765
EheI GGCGCC 1 cut(s) 765
FaeI CATG 4 cut(s) 326, 449, 845, 1095
FalI AAGNNNNNCTT 3 cut(s) 581, 613, 1507
FaqI GGGAC 4 cut(s) 484, 953, 1123, 1513
FatI CATG 4 cut(s) 322, 445, 841, 1091
FauI CCCGC 1 cut(s) 1348
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 1 cut(s) 1344
FokI GGATG 6 cut(s) 145, 635, 653, 720, 729, 1244
Fsp4HI GCNGC 1 cut(s) 1344
FspBI CTAG 6 cut(s) 123, 414, 503, 528, 861, 1200
GlaI GCGC 1 cut(s) 765
GluI GCNGC 1 cut(s) 1344
GsuI CTGGAG 2 cut(s) 444, 1047
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 1 cut(s) 865
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 766
Hin1I GRCGYC 1 cut(s) 764
Hin1II CATG 4 cut(s) 326, 449, 845, 1095
Hin6I GCGC 1 cut(s) 764
HinP1I GCGC 1 cut(s) 764
HindIII AAGCTT 1 cut(s) 212
HphI GGTGA 8 cut(s) 3, 256, 479, 623, 770, 1071, 1109, 1329
HpyAV CCTTC 7 cut(s) 304, 559, 577, 602, 698, 1062, 1412
HpyCH4III ACNGT 1 cut(s) 1390
HpyCH4V TGCA 5 cut(s) 925, 1193, 1235, 1313, 1409
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
Hsp92I GRCGYC 1 cut(s) 764
Hsp92II CATG 4 cut(s) 326, 449, 845, 1095
HspAI GCGC 1 cut(s) 764
KasI GGCGCC 1 cut(s) 763
Ksp22I TGATCA 1 cut(s) 682
LmnI GCTCC 3 cut(s) 1066, 1421, 1436
Lsp1109I GCAGC 1 cut(s) 1330
LweI GCATC 5 cut(s) 265, 451, 912, 1222, 1244
MabI ACCWGGT 1 cut(s) 13
MaeI CTAG 6 cut(s) 123, 414, 503, 528, 861, 1200
MaeIII GTNAC 2 cut(s) 254, 1453
MflI RGATCY 4 cut(s) 234, 359, 487, 1126
MhlI GDGCHC 1 cut(s) 1216
MluCI AATT 4 cut(s) 376, 395, 440, 493
Mly113I GGCGCC 1 cut(s) 764
MlyI GAGTC 2 cut(s) 1324, 1450
MmeI TCCRAC 1 cut(s) 307
Mph1103I ATGCAT 2 cut(s) 927, 1237
MroXI GAANNNNTTC 4 cut(s) 995, 1051, 1355, 1477
MseI TTAA 4 cut(s) 492, 770, 822, 1272
MslI CAYNNNNRTG 1 cut(s) 1302
MspA1I CMGCKG 2 cut(s) 749, 1343
MspR9I CCNGG 5 cut(s) 15, 357, 423, 1065, 1446
MvaI CCWGG 5 cut(s) 15, 357, 423, 1065, 1446
MvnI CGCG 1 cut(s) 1240
MwoI GCNNNNNNNGC 1 cut(s) 785
NarI GGCGCC 1 cut(s) 764
NlaIII CATG 4 cut(s) 326, 449, 845, 1095
NlaIV GGNNCC 3 cut(s) 236, 765, 1501
NmuCI GTSAC 2 cut(s) 254, 1453
NruI TCGCGA 1 cut(s) 1240
NsiI ATGCAT 2 cut(s) 927, 1237
NspV TTCGAA 1 cut(s) 551
PdmI GAANNNNTTC 4 cut(s) 995, 1051, 1355, 1477
PfeI GAWTC 9 cut(s) 262, 316, 556, 727, 857, 889, 991, 1007, 1076
PflFI GACNNNGTC 1 cut(s) 1516
PfoI TCCNGGA 2 cut(s) 355, 421
PkrI GCNGC 1 cut(s) 1345
PleI GAGTC 2 cut(s) 1324, 1450
PluTI GGCGCC 1 cut(s) 767
PpsI GAGTC 2 cut(s) 1324, 1450
PsiI TTATAA 1 cut(s) 1088
Psp6I CCWGG 5 cut(s) 13, 355, 421, 1063, 1444
PspGI CCWGG 5 cut(s) 13, 355, 421, 1063, 1444
PspN4I GGNNCC 3 cut(s) 236, 765, 1501
PspPI GGNCC 2 cut(s) 1169, 1500
PsuI RGATCY 4 cut(s) 234, 359, 487, 1126
PsyI GACNNNGTC 1 cut(s) 1516
PvuII CAGCTG 1 cut(s) 749
RruI TCGCGA 1 cut(s) 1240
RsaI GTAC 3 cut(s) 676, 697, 740
RsaNI GTAC 3 cut(s) 675, 696, 739
RseI CAYNNNNRTG 1 cut(s) 1302
SaqAI TTAA 4 cut(s) 492, 770, 822, 1272
SatI GCNGC 1 cut(s) 1344
Sau96I GGNCC 2 cut(s) 1169, 1500
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 2 cut(s) 1324, 1450
ScrFI CCNGG 5 cut(s) 15, 357, 423, 1065, 1446
SduI GDGCHC 1 cut(s) 1216
SexAI ACCWGGT 1 cut(s) 13
SfaNI GCATC 5 cut(s) 265, 451, 912, 1222, 1244
SfoI GGCGCC 1 cut(s) 765
SfuI TTCGAA 1 cut(s) 551
SinI GGWCC 2 cut(s) 1169, 1500
SmiMI CAYNNNNRTG 1 cut(s) 1302
SmlI CTYRAG 2 cut(s) 560, 1130
SmoI CTYRAG 2 cut(s) 560, 1130
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 4 cut(s) 376, 395, 440, 493
SsiI CCGC 4 cut(s) 242, 779, 1172, 1341
SspDI GGCGCC 1 cut(s) 763
SspMI CTAG 6 cut(s) 123, 414, 503, 528, 861, 1200
StyD4I CCNGG 5 cut(s) 13, 355, 421, 1063, 1444
TaaI ACNGT 1 cut(s) 1390
TaqI TCGA 9 cut(s) 115, 144, 171, 183, 228, 294, 551, 1259, 1300
TasI AATT 4 cut(s) 376, 395, 440, 493
TatI WGTACW 1 cut(s) 695
TfiI GAWTC 9 cut(s) 262, 316, 556, 727, 857, 889, 991, 1007, 1076
Tru1I TTAA 4 cut(s) 492, 770, 822, 1272
Tru9I TTAA 4 cut(s) 492, 770, 822, 1272
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 2 cut(s) 254, 1453
TseI GCWGC 1 cut(s) 1343
Tsp45I GTSAC 2 cut(s) 254, 1453
TspDTI ATGAA 6 cut(s) 408, 434, 492, 830, 1089, 1209
TspGWI ACGGA 2 cut(s) 145, 1272
TspRI CASTG 1 cut(s) 795
Tth111I GACNNNGTC 1 cut(s) 1516
VpaK11BI GGWCC 2 cut(s) 1169, 1500
XagI CCTNNNNNAGG 1 cut(s) 1062
XapI RAATTY 3 cut(s) 376, 395, 440
XmnI GAANNNNTTC 4 cut(s) 995, 1051, 1355, 1477
XspI CTAG 6 cut(s) 123, 414, 503, 528, 861, 1200
ZrmI AGTACT 1 cut(s) 697
Zsp2I ATGCAT 2 cut(s) 927, 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.