Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010388

Physical Location & Seq

Genomic Coordinates Forward (+)

22514959 .. 22515984

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G225800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTTCTCACTCCGGCTCACTCTCCTCGCCACCTCTCATCCCCTTCACCATTTGCAATTTCCGATAGTTCGGTCCAACTGCCAAGAAGTTCCTCCCAAATCACTTCCAGAAACCCTAGAGGCCATCCCACAGTCCTCGACGAAGACACCTTTGTCGCCGCGATTGAGATGATAATCGAAAGAGACTTCTTTCCGGATATCTCGAAGCTTTGGGACCGCCTTGACTGGCTCGAAGCGATCAAGACCCGCGACCCGGGTCAGATCCACGATGCCCAGTTGAAGATCATTGAGTGCCACAACTTTATGGGCCAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Es2

Protein Analysis

106

Amino Acids

11.94

Weight (kDa)

5.62

Isoelectric Point (pI)

68.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07790
fragaria_vesca	FvH4_6g41230
malus_domestica	MD09G1121500.v1.1 MD17G1112500.v1.1
prunus_persica	Prupe.3G202200_v2.0.a1 Prupe.3G202200_v2.0.a1 Prupe.3G225800_v2.0.a1 Prupe.3G225800_v2.0.a1
pyrus_communis	pycom09g04590 pycom17g10420
rosa_chinensis	RchiOBHm_Chr2g0156781
rosa_laevigata	RLG00000020941
rosa_multiflora	Rmu_sc0008149.1_g000009 Rmu_sc0008149.1_g000010
rosa_roxburghii	Rroxscaffold_2G00092730
rosa_rugosa	Rorug02G0456100
rosa_samantha	Rh2AG521700 Rh2BG535100 Rh2CG506600 Rh2DG544100
rosa_wichuraiana	Rw2G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccII	CGCG	2 cut(s)	161, 249
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	3 cut(s)	159, 217, 247
AclWI	GGATC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	253
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	2 cut(s)	121, 307
AspS9I	GGNCC	3 cut(s)	73, 214, 307
AsuC2I	CCSGG	2 cut(s)	254, 255
AsuHPI	GGTGA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	73, 214
BbsI	GAAGAC	1 cut(s)	150
BccI	CCATC	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	254, 255
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	254, 255
Bme18I	GGWCC	2 cut(s)	73, 214
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	73, 214, 307
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	254, 255
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	268
BoxI	GACNNNNGTC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	2 cut(s)	254, 255
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	230, 274
Bse8I	GATNNNNATC	1 cut(s)	173
BseAI	TCCGGA	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	38, 124
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseNI	ACTGG	2 cut(s)	230, 274
BseRI	GAGGAG	1 cut(s)	15
Bsh1236I	CGCG	2 cut(s)	161, 249
BshFI	GGCC	2 cut(s)	123, 309
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	3 cut(s)	14, 194, 254
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	123, 309
BsoBI	CYCGRG	1 cut(s)	253
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	237, 261, 282
BspACI	CCGC	3 cut(s)	159, 217, 247
BspANI	GGCC	2 cut(s)	123, 309
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	161, 249
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	230, 274
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	237, 261, 282
Bst4CI	ACNGT	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	38, 124
BstFNI	CGCG	2 cut(s)	161, 249
BstKTI	GATC	3 cut(s)	240, 264, 285
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	3 cut(s)	237, 261, 282
BstPAI	GACNNNNGTC	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	252, 253
BstUI	CGCG	2 cut(s)	161, 249
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	123, 309
BtsCI	GGATG	2 cut(s)	38, 124
Cfr13I	GGNCC	3 cut(s)	73, 214, 307
Cfr9I	CCCGGG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	17, 123, 208, 229, 309
CviKI_1	RGCY	5 cut(s)	17, 123, 208, 229, 309
DpnI	GATC	3 cut(s)	239, 263, 284
DpnII	GATC	3 cut(s)	237, 261, 282
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	73, 214
Eco88I	CYCGRG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	199
FaiI	YATR	1 cut(s)	305
FaqI	GGGAC	1 cut(s)	227
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	2 cut(s)	25, 111
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	123, 309
HapII	CCGG	3 cut(s)	14, 194, 254
HindIII	AAGCTT	1 cut(s)	206
HpaII	CCGG	3 cut(s)	14, 194, 254
HphI	GGTGA	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	64, 261
Hpy188III	TCNNGA	4 cut(s)	108, 194, 202, 241
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	56
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	237, 261, 282
LpnPI	CCDG	6 cut(s)	27, 121, 207, 211, 267, 287
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	117
MalI	GATC	3 cut(s)	239, 263, 284
MboI	GATC	3 cut(s)	237, 261, 282
MboII	GAAGA	2 cut(s)	155, 292
MflI	RGATCY	1 cut(s)	261
MluCI	AATT	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	36, 44, 103, 113, 146
MroI	TCCGGA	1 cut(s)	193
MspI	CCGG	3 cut(s)	14, 194, 254
MspR9I	CCNGG	2 cut(s)	254, 255
MvnI	CGCG	2 cut(s)	161, 249
NciI	CCSGG	2 cut(s)	254, 255
NdeII	GATC	3 cut(s)	237, 261, 282
NlaIV	GGNNCC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	73, 214, 307
PsuI	RGATCY	1 cut(s)	261
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	3 cut(s)	237, 261, 282
Sau96I	GGNCC	3 cut(s)	73, 214, 307
ScrFI	CCNGG	2 cut(s)	254, 255
SetI	ASST	3 cut(s)	36, 152, 210
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	2 cut(s)	73, 214
SmaI	CCCGGG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	3 cut(s)	159, 217, 247
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	252, 253
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	4 cut(s)	138, 177, 203, 231
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	161
TspMI	CCCGGG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	73, 214
XmaI	CCCGGG	1 cut(s)	253
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.