Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008149.1

Orthogroup ID

OG0010388

Physical Location & Seq

Genomic Coordinates Reverse (-)

35343 .. 35921

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008149.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgctcggcactccgggccgctccccgcgccacctctcctccccttcgccgtccgcagtttccgattacaccctccaaacccccaaaagctccaccgccgtcgccgctcccaaaaaccctagagccgcctgcccccaggtcctcgacgaagacaccttcgtggccgagctcgagcggatcatcgagcgcgacttcttccccgatctcgcgaagctccgggaccgccacgactggctggaggccatcaagacccgcgacccggtccggatccgagacgcccagttacagatcatcgagcgccgcggcaacaaggtaccccgtacttcaaaccctaatgccaaaacccccggttccactttcttgcgtagttgtacccctttggatgatttcgatggaagaaccccgaacgccgggttgcctagtgcggttgattccggcgacggtgacgccggcggcggcgttgaggagtcgttgagcttggaccagtttgtgaggaggtatactagtgaggataatgatagctttaagaagattgtagagaaggagaataggaagaggaaagagaggtatgatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Es2

Protein Analysis

192

Amino Acids

21.43

Weight (kDa)

6.76

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07790
fragaria_vesca	FvH4_6g41230
malus_domestica	MD09G1121500.v1.1 MD17G1112500.v1.1
prunus_persica	Prupe.3G202200_v2.0.a1 Prupe.3G202200_v2.0.a1 Prupe.3G225800_v2.0.a1 Prupe.3G225800_v2.0.a1
pyrus_communis	pycom09g04590 pycom17g10420
rosa_chinensis	RchiOBHm_Chr2g0156781
rosa_laevigata	RLG00000020941
rosa_multiflora	Rmu_sc0008149.1_g000009 Rmu_sc0008149.1_g000010
rosa_roxburghii	Rroxscaffold_2G00092730
rosa_rugosa	Rorug02G0456100
rosa_samantha	Rh2AG521700 Rh2BG535100 Rh2CG506600 Rh2DG544100
rosa_wichuraiana	Rw2G043070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	313
AccBSI	CCGCTC	3 cut(s)	21, 107, 175
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	5 cut(s)	28, 189, 209, 255, 303
AccIII	TCCGGA	1 cut(s)	264
AclWI	GGATC	3 cut(s)	185, 262, 275
AcoI	YGGCCR	1 cut(s)	162
AcyI	GRCGYC	2 cut(s)	276, 447
AfaI	GTAC	3 cut(s)	315, 322, 373
AfiI	CCNNNNNNNGG	2 cut(s)	259, 410
AgsI	TTSAA	1 cut(s)	327
AhlI	ACTAGT	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	135
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	5 cut(s)	90, 169, 214, 477, 522
AluI	AGCT	5 cut(s)	90, 169, 214, 477, 522
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	185, 262, 275
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	264
AoxI	GGCC	3 cut(s)	16, 162, 240
Asp718I	GGTACC	1 cut(s)	313
AspLEI	GCGC	3 cut(s)	30, 189, 300
AspS9I	GGNCC	5 cut(s)	16, 139, 220, 262, 481
AsuC2I	CCSGG	5 cut(s)	15, 218, 260, 348, 412
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	4 cut(s)	139, 220, 262, 481
BamHI	GGATCC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	2 cut(s)	251, 386
BceAI	ACGGC	2 cut(s)	34, 83
BciT130I	CCWGG	1 cut(s)	137
BcnI	CCSGG	5 cut(s)	15, 218, 260, 348, 412
BcoDI	GTCTC	1 cut(s)	267
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	3 cut(s)	120, 420, 504
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	7 cut(s)	19, 105, 126, 301, 304, 454, 457
BlsI	GCNGC	7 cut(s)	20, 106, 127, 302, 305, 455, 458
Bme1390I	CCNGG	6 cut(s)	15, 137, 218, 260, 348, 412
Bme18I	GGWCC	4 cut(s)	139, 220, 262, 481
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	5 cut(s)	16, 139, 220, 262, 481
BmiI	GGNNCC	4 cut(s)	221, 269, 315, 352
BmrFI	CCNGG	6 cut(s)	15, 137, 218, 260, 348, 412
BmrI	ACTGGG	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	257
BpuMI	CCSGG	5 cut(s)	15, 218, 260, 348, 412
BsaHI	GRCGYC	2 cut(s)	276, 447
BsaJI	CCNNGG	3 cut(s)	135, 301, 346
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 410
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	3 cut(s)	236, 280, 484
BseAI	TCCGGA	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	3 cut(s)	135, 301, 346
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	259, 410
BseNI	ACTGG	3 cut(s)	236, 280, 484
BseRI	GAGGAG	3 cut(s)	28, 479, 508
Bsh1236I	CGCG	5 cut(s)	28, 189, 209, 255, 303
BshFI	GGCC	3 cut(s)	18, 164, 242
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	8 cut(s)	14, 217, 260, 265, 348, 411, 435, 450
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	259, 410
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	18, 164, 242
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	177, 202, 267, 288
Bsp68I	TCGCGA	1 cut(s)	209
BspANI	GGCC	3 cut(s)	18, 164, 242
BspEI	TCCGGA	1 cut(s)	264
BspFNI	CGCG	5 cut(s)	28, 189, 209, 255, 303
BspLI	GGNNCC	4 cut(s)	221, 269, 315, 352
BspPI	GGATC	3 cut(s)	185, 262, 275
BspT107I	GGYRCC	1 cut(s)	313
BsrBI	CCGCTC	3 cut(s)	21, 107, 175
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	236, 280, 484
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	3 cut(s)	135, 301, 346
BssMI	GATC	4 cut(s)	177, 202, 267, 288
BssNAI	GTATAC	1 cut(s)	501
BssNI	GRCGYC	2 cut(s)	276, 447
Bst1107I	GTATAC	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	548
BstACI	GRCGYC	2 cut(s)	276, 447
BstC8I	GCNNGC	2 cut(s)	130, 451
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	5 cut(s)	28, 189, 209, 255, 303
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	3 cut(s)	30, 189, 300
BstKTI	GATC	4 cut(s)	180, 205, 270, 291
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	4 cut(s)	177, 202, 267, 288
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 27, 104
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	6 cut(s)	13, 135, 216, 258, 346, 410
BstUI	CGCG	5 cut(s)	28, 189, 209, 255, 303
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZ17I	GTATAC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	18, 164, 242
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	388
BtuMI	TCGCGA	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	130, 451
CfoI	GCGC	3 cut(s)	30, 189, 300
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	5 cut(s)	16, 139, 220, 262, 481
Cfr42I	CCGCGG	1 cut(s)	304
CpoI	CGGWCCG	1 cut(s)	262
CseI	GACGC	2 cut(s)	284, 455
Csp6I	GTAC	3 cut(s)	314, 321, 372
CspI	CGGWCCG	1 cut(s)	262
CviQI	GTAC	3 cut(s)	314, 321, 372
DpnI	GATC	4 cut(s)	179, 204, 269, 290
DpnII	GATC	4 cut(s)	177, 202, 267, 288
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	4 cut(s)	139, 220, 262, 481
Eco53kI	GAGCTC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	267
FaiI	YATR	2 cut(s)	501, 570
FaqI	GGGAC	1 cut(s)	233
FauI	CCCGC	2 cut(s)	33, 260
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	7 cut(s)	19, 105, 126, 301, 304, 454, 457
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	7 cut(s)	19, 105, 126, 301, 304, 454, 457
FspBI	CTAG	3 cut(s)	120, 420, 504
GlaI	GCGC	3 cut(s)	29, 188, 299
GluI	GCNGC	7 cut(s)	19, 105, 126, 301, 304, 454, 457
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	18, 164, 242
HapII	CCGG	8 cut(s)	14, 217, 260, 265, 348, 411, 435, 450
HgaI	GACGC	2 cut(s)	284, 455
HhaI	GCGC	3 cut(s)	30, 189, 300
Hin1I	GRCGYC	2 cut(s)	276, 447
Hin6I	GCGC	3 cut(s)	28, 187, 298
HinP1I	GCGC	3 cut(s)	28, 187, 298
HinfI	GANTC	2 cut(s)	431, 467
HpaII	CCGG	8 cut(s)	14, 217, 260, 265, 348, 411, 435, 450
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	3 cut(s)	64, 272, 578
Hpy188III	TCNNGA	3 cut(s)	208, 247, 265
Hpy8I	GTNNAC	1 cut(s)	501
Hpy99I	CGWCG	3 cut(s)	104, 149, 443
HpyAV	CCTTC	3 cut(s)	54, 166, 535
HpyCH4III	ACNGT	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 27, 104
Hsp92I	GRCGYC	2 cut(s)	276, 447
HspAI	GCGC	3 cut(s)	28, 187, 298
Kpn2I	TCCGGA	1 cut(s)	264
KpnI	GGTACC	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	449
KroNI	GCCGGC	1 cut(s)	451
KspI	CCGCGG	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	177, 202, 267, 288
LmnI	GCTCC	4 cut(s)	26, 95, 112, 219
MaeI	CTAG	3 cut(s)	120, 420, 504
MaeIII	GTNAC	2 cut(s)	282, 443
MalI	GATC	4 cut(s)	179, 204, 269, 290
MbiI	CCGCTC	3 cut(s)	21, 107, 175
MboI	GATC	4 cut(s)	177, 202, 267, 288
MboII	GAAGA	5 cut(s)	161, 187, 408, 541, 565
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	476
MreI	CGCCGGCG	1 cut(s)	449
MroI	TCCGGA	1 cut(s)	264
MroNI	GCCGGC	1 cut(s)	449
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	8 cut(s)	14, 217, 260, 265, 348, 411, 435, 450
MspR9I	CCNGG	6 cut(s)	15, 137, 218, 260, 348, 412
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	5 cut(s)	28, 189, 209, 255, 303
MwoI	GCNNNNNNNGC	3 cut(s)	15, 27, 104
NaeI	GCCGGC	1 cut(s)	451
NciI	CCSGG	5 cut(s)	15, 218, 260, 348, 412
NdeII	GATC	4 cut(s)	177, 202, 267, 288
NgoMIV	GCCGGC	1 cut(s)	449
NlaIV	GGNNCC	4 cut(s)	221, 269, 315, 352
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	443
NruI	TCGCGA	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	431
PflFI	GACNNNGTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	7 cut(s)	20, 106, 127, 302, 305, 455, 458
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	4 cut(s)	221, 269, 315, 352
PspPI	GGNCC	5 cut(s)	16, 139, 220, 262, 481
PspPPI	RGGWCCY	1 cut(s)	139
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	267
PsyI	GACNNNGTC	1 cut(s)	260
RruI	TCGCGA	1 cut(s)	209
RsaI	GTAC	3 cut(s)	315, 322, 373
RsaNI	GTAC	3 cut(s)	314, 321, 372
RseI	CAYNNNNRTG	1 cut(s)	158
Rsr2I	CGGWCCG	1 cut(s)	262
RsrII	CGGWCCG	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	171
SacII	CCGCGG	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	7 cut(s)	19, 105, 126, 301, 304, 454, 457
Sau3AI	GATC	4 cut(s)	177, 202, 267, 288
Sau96I	GGNCC	5 cut(s)	16, 139, 220, 262, 481
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	6 cut(s)	15, 137, 218, 260, 348, 412
SduI	GDGCHC	1 cut(s)	171
Sfr274I	CTCGAG	1 cut(s)	170
Sfr303I	CCGCGG	1 cut(s)	304
SgrAI	CRCCGGYG	1 cut(s)	449
SgrBI	CCGCGG	1 cut(s)	304
SinI	GGWCC	4 cut(s)	139, 220, 262, 481
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SpeI	ACTAGT	1 cut(s)	503
SspMI	CTAG	3 cut(s)	120, 420, 504
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	6 cut(s)	13, 135, 216, 258, 346, 410
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	5 cut(s)	144, 171, 183, 294, 390
TauI	GCSGC	7 cut(s)	21, 107, 128, 303, 306, 456, 459
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	443
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	4 cut(s)	139, 220, 262, 481
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	500
XspI	CTAG	3 cut(s)	120, 420, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.