MD09G1121500.v1.1

Nuclear protein Es2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010388
Physical Location & Seq
Reverse (-)
9375844 .. 9377490
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1121500.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGCTTCTCACTCCAGGCCACTCTCCTCGCCACCTCTCATCCCCTTCGCCCTCTACAATTTCCGAAGCTTCTGCCCTAAACCCTACGAATTCCACCCAAATCACACCCAAGAACCCTAAAGGCCACCCCACGGTCCTCGATGAAGACACATATGTCGCCGCGATCGAGAAGATCATTGAAAGGGACTTCTTTCCCGATATTTCCAAGCTCCGGGACCGCCTCGACTGGCTCGAAGCGATCAAGACCCGCGACCCGGTTCAGATTCGAGATGCCCAGTTGAAGATCATCGAGCGGCGCGGAAAGAAGGTAACTCATAATCCTGACCCTGATGGTAGAACCCCAGGTTCGACTTTTATGCGTAGTTTTACCCCTGCCGATGAATTTGATGGTAAAACCCCGGGTGTTTCGAATGTGGGATTGTCCGGTGATGTAGGGTCTAGCGGCGGTGATGATGGCGTAGAGGGCTCGTTGTCACTTGATCAGTTCTTTAGGCGGTATACGAGTGAGGACAATCATAGTTTTTCGAATATTTTGGAGAAGGTGAATAGGAAGAGGAAGGAGAGATATGAGTATTTGACGGAAGGCGAAAAGGAGGAGGTTAAATCTATTGAGGATGTGAAGAGGGATAGGATTACAGATGGGTATGGAACGTCGGATCAGCCGCCTAGTACATTGGATGGGTGGAAATATACAGCGAAAAATTTGCTGATGTACCATCCTGCTGATCGAGGTGAGGCCCCATTGACAGAGGAGGAACGTGCAAATAGGATGAAGAGTTTGGAGAAGGAAATTAATCGACCCAATACGCGATTCCATGGGAAGATAATGGATTCCAGGCCAAAGGAGGATGCTATGGCCGAGTTTCTTTATACCACAGTTGCAGGTGCAACCCCAGTTATCATGGATAGAGATGGGGATAAGTTGAAGAAGTATGATTTGGATGATTTGAGGAAGACTCCCAATCCATTTTATGTGGAAACGGAGAAAAAAGCAGATAATGGTTATAGTTTTGTGAAGACACCCTCGCCTGCACCAGGTGTTGATGAATCACCGTTTATTACATGGGGTGAAATTGAAGGGACACCTCTGAGGTTGGATCTCGAGGACAATCCAGTTGATATTGGTGGTGGTGAAGGGCCTCATTATAGGATCCCATGCCCACCTGTAAGAGATGAAAAGGCTCACTCGCTGTCAAGGGAAGCTGCACGCAAATTGAGGGAAAGGTCAAAATTGTTTCACAAGCCACCTCTGCCATCACCTTCTAGAGGTGGCAGTGCCAGTCCAAGCGTGCGGACACTCTCCCCTGCTGCTCAGAAGTTTGTAAGGAATGCAATTGGCAAGTCCTCATCTTCTATTGATGAAACTCTTCGTGCCAGTTACCGAGGTTCAAGTCCTGGGTTTACTACTCCTAAGGGTGGTAGGAGTGTATCAAGGCTTGGAAGCCATGCTAGCATCATATCAAGATCACCTTCTGCTGCAAGGGAGGGAACTAATCCTCCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Es2

Protein Analysis

502

Amino Acids

55.51

Weight (kDa)

7.77

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Es2 PF09751 43 - 440 1.7e-105 Nuclear protein Es2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 872
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 872
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 497
AccII CGCG 4 cut(s) 161, 249, 297, 808
AclWI GGATC 4 cut(s) 663, 1104, 1144, 1157
AcoI YGGCCR 1 cut(s) 855
AcsI RAATTY 3 cut(s) 88, 380, 700
AdeI CACNNNGTG 1 cut(s) 1037
AfaI GTAC 2 cut(s) 670, 713
AfiI CCNNNNNNNGG 6 cut(s) 130, 210, 253, 1034, 1265, 1415
AgsI TTSAA 5 cut(s) 179, 280, 925, 1076, 1389
AjnI CCWGG 5 cut(s) 13, 340, 833, 1033, 1393
AjuI GAANNNNNNNTTGG 4 cut(s) 794, 826, 920, 952
AloI GAACNNNNNNTCC 1 cut(s) 1480
AluBI AGCT 3 cut(s) 68, 208, 1202
AluI AGCT 3 cut(s) 68, 208, 1202
AlwI GGATC 4 cut(s) 663, 1104, 1144, 1157
Ama87I CYCGRG 2 cut(s) 397, 1100
AoxI GGCC 6 cut(s) 16, 121, 735, 836, 855, 1136
ApeKI GCWGC 3 cut(s) 1202, 1307, 1475
ApoI RAATTY 3 cut(s) 88, 380, 700
AseI ATTAAT 1 cut(s) 792
Asp700I GAANNNNTTC 1 cut(s) 1365
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 4 cut(s) 133, 214, 736, 1136
AsuC2I CCSGG 4 cut(s) 212, 254, 398, 399
AsuHPI GGTGA 9 cut(s) 437, 458, 553, 743, 1041, 1079, 1142, 1248, 1458
AsuII TTCGAA 2 cut(s) 407, 524
AsuNHI GCTAGC 1 cut(s) 1448
AvaI CYCGRG 2 cut(s) 397, 1100
AvaII GGWCC 2 cut(s) 133, 214
AxyI CCTNAGG 1 cut(s) 1410
BamHI GGATCC 1 cut(s) 1149
BanII GRGCYC 1 cut(s) 467
BbsI GAAGAC 3 cut(s) 150, 959, 1022
BbvI GCAGC 3 cut(s) 1189, 1294, 1462
BccI CCATC 8 cut(s) 323, 380, 446, 632, 671, 723, 905, 1261
BcgI CGANNNNNNTGC 6 cut(s) 53, 87, 337, 371, 685, 719
BciT130I CCWGG 5 cut(s) 15, 342, 835, 1035, 1395
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 4 cut(s) 212, 254, 398, 399
BfaI CTAG 4 cut(s) 438, 666, 1263, 1449
BfuAI ACCTGC 1 cut(s) 872
BisI GCNGC 7 cut(s) 159, 293, 442, 662, 1203, 1308, 1476
BlsI GCNGC 7 cut(s) 160, 294, 443, 663, 1204, 1309, 1477
Bme1390I CCNGG 9 cut(s) 15, 212, 254, 342, 398, 399, 835, 1035, 1395
Bme18I GGWCC 2 cut(s) 133, 214
BmeT110I CYCGRG 2 cut(s) 397, 1100
BmgT120I GGNCC 4 cut(s) 133, 214, 736, 1136
BmiI GGNNCC 3 cut(s) 215, 738, 1151
BmrFI CCNGG 9 cut(s) 15, 212, 254, 342, 398, 399, 835, 1035, 1395
BmrI ACTGGG 2 cut(s) 268, 887
BmsI GCATC 3 cut(s) 259, 838, 1461
BmtI GCTAGC 1 cut(s) 1452
BmuI ACTGGG 2 cut(s) 268, 887
BpiI GAAGAC 3 cut(s) 150, 959, 1022
BplI GAGNNNNNCTC 2 cut(s) 940, 972
Bpu14I TTCGAA 2 cut(s) 407, 524
BpuMI CCSGG 4 cut(s) 212, 254, 398, 399
BsaJI CCNNGG 8 cut(s) 129, 340, 396, 397, 814, 1381, 1394, 1499
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 1 cut(s) 1480
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 210, 253, 1034, 1265, 1415
Bse1I ACTGG 6 cut(s) 230, 274, 893, 1112, 1278, 1374
Bse21I CCTNAGG 1 cut(s) 1410
BseBI CCWGG 5 cut(s) 15, 342, 835, 1035, 1395
BseDI CCNNGG 8 cut(s) 129, 340, 396, 397, 814, 1381, 1394, 1499
BseGI GGATG 7 cut(s) 38, 619, 682, 715, 774, 853, 946
BseLI CCNNNNNNNGG 6 cut(s) 130, 210, 253, 1034, 1265, 1415
BseMII CTCAG 2 cut(s) 1079, 1325
BseNI ACTGG 6 cut(s) 230, 274, 893, 1112, 1278, 1374
BseRI GAGGAG 3 cut(s) 15, 608, 764
BseXI GCAGC 3 cut(s) 1189, 1294, 1462
BsgI GTGCAG 2 cut(s) 1014, 1188
Bsh1236I CGCG 4 cut(s) 161, 249, 297, 808
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 6 cut(s) 18, 123, 737, 838, 857, 1138
BsiEI CGRYCG 1 cut(s) 165
BsiHKCI CYCGRG 2 cut(s) 397, 1100
BsiSI CCGG 4 cut(s) 211, 254, 398, 423
BslFI GGGAC 3 cut(s) 197, 227, 1093
BslI CCNNNNNNNGG 6 cut(s) 130, 210, 253, 1034, 1265, 1415
BsmFI GGGAC 3 cut(s) 197, 227, 1093
BsmI GAATGC 1 cut(s) 1333
BsnI GGCC 6 cut(s) 18, 123, 737, 838, 857, 1138
BsoBI CYCGRG 2 cut(s) 397, 1100
Bsp119I TTCGAA 2 cut(s) 407, 524
Bsp1286I GDGCHC 1 cut(s) 467
Bsp19I CCATGG 1 cut(s) 814
BspANI GGCC 6 cut(s) 18, 123, 737, 838, 857, 1138
BspCNI CTCAG 2 cut(s) 1080, 1324
BspFNI CGCG 4 cut(s) 161, 249, 297, 808
BspLI GGNNCC 3 cut(s) 215, 738, 1151
BspMI ACCTGC 1 cut(s) 872
BspOI GCTAGC 1 cut(s) 1452
BspPI GGATC 4 cut(s) 663, 1104, 1144, 1157
BspT104I TTCGAA 2 cut(s) 407, 524
BsrBI CCGCTC 1 cut(s) 292
BsrI ACTGG 6 cut(s) 230, 274, 893, 1112, 1278, 1374
BssECI CCNNGG 8 cut(s) 129, 340, 396, 397, 814, 1381, 1394, 1499
BssNAI GTATAC 1 cut(s) 498
BssT1I CCWWGG 2 cut(s) 814, 1499
Bst1107I GTATAC 1 cut(s) 498
Bst2UI CCWGG 5 cut(s) 15, 342, 835, 1035, 1395
Bst4CI ACNGT 3 cut(s) 133, 877, 1053
Bst6I CTCTTC 4 cut(s) 545, 614, 767, 1371
BstBI TTCGAA 2 cut(s) 407, 524
BstC8I GCNNGC 4 cut(s) 1029, 1207, 1289, 1450
BstDEI CTNAG 3 cut(s) 1088, 1311, 1410
BstDSI CCRYGG 2 cut(s) 129, 814
BstENI CCTNNNNNAGG 2 cut(s) 1032, 1263
BstF5I GGATG 7 cut(s) 38, 619, 682, 715, 774, 853, 946
BstFNI CGCG 4 cut(s) 161, 249, 297, 808
BstHHI GCGC 1 cut(s) 297
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 462, 1249, 1449
BstNI CCWGG 5 cut(s) 15, 342, 835, 1035, 1395
BstSCI CCNGG 9 cut(s) 13, 210, 252, 340, 396, 397, 833, 1033, 1393
BstUI CGCG 4 cut(s) 161, 249, 297, 808
BstV1I GCAGC 3 cut(s) 1189, 1294, 1462
BstV2I GAAGAC 3 cut(s) 150, 959, 1022
BstX2I RGATCY 2 cut(s) 1096, 1149
BstYI RGATCY 2 cut(s) 1096, 1149
BstZ17I GTATAC 1 cut(s) 498
Bsu36I CCTNAGG 1 cut(s) 1410
BsuRI GGCC 6 cut(s) 18, 123, 737, 838, 857, 1138
BtgI CCRYGG 2 cut(s) 129, 814
BtsCI GGATG 7 cut(s) 38, 619, 682, 715, 774, 853, 946
BtsI GCAGTG 1 cut(s) 1279
BtsIMutI CAGTG 1 cut(s) 1279
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 4 cut(s) 1029, 1207, 1289, 1450
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 4 cut(s) 133, 214, 736, 1136
Cfr9I CCCGGG 1 cut(s) 397
CsiI ACCWGGT 1 cut(s) 1033
Csp6I GTAC 2 cut(s) 669, 712
CviAII CATG 5 cut(s) 815, 901, 1062, 1155, 1445
CviQI GTAC 2 cut(s) 669, 712
DdeI CTNAG 3 cut(s) 1088, 1311, 1410
DraIII CACNNNGTG 1 cut(s) 1037
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 4 cut(s) 545, 614, 767, 1371
EarI CTCTTC 4 cut(s) 545, 614, 767, 1371
Eco130I CCWWGG 2 cut(s) 814, 1499
Eco24I GRGCYC 1 cut(s) 467
Eco47I GGWCC 2 cut(s) 133, 214
Eco81I CCTNAGG 1 cut(s) 1410
Eco88I CYCGRG 2 cut(s) 397, 1100
EcoNI CCTNNNNNAGG 2 cut(s) 1032, 1263
EcoO109I RGGNCCY 2 cut(s) 736, 1136
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 5 cut(s) 13, 340, 833, 1033, 1393
EcoT14I CCWWGG 2 cut(s) 814, 1499
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 2 cut(s) 814, 1499
FaeI CATG 5 cut(s) 818, 904, 1065, 1158, 1448
FalI AAGNNNNNCTT 2 cut(s) 1453, 1485
FaqI GGGAC 3 cut(s) 197, 227, 1093
FatI CATG 5 cut(s) 814, 900, 1061, 1154, 1444
FauI CCCGC 1 cut(s) 254
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 7 cut(s) 159, 293, 442, 662, 1203, 1308, 1476
FokI GGATG 7 cut(s) 25, 626, 689, 702, 781, 860, 953
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 7 cut(s) 159, 293, 442, 662, 1203, 1308, 1476
FspBI CTAG 4 cut(s) 438, 666, 1263, 1449
GlaI GCGC 1 cut(s) 296
GluI GCNGC 7 cut(s) 159, 293, 442, 662, 1203, 1308, 1476
HaeIII GGCC 6 cut(s) 18, 123, 737, 838, 857, 1138
HapII CCGG 4 cut(s) 211, 254, 398, 423
HhaI GCGC 1 cut(s) 297
Hin1II CATG 5 cut(s) 818, 904, 1065, 1158, 1448
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 5 cut(s) 262, 810, 830, 955, 1046
HpaII CCGG 4 cut(s) 211, 254, 398, 423
HphI GGTGA 9 cut(s) 437, 458, 553, 743, 1041, 1079, 1142, 1248, 1458
Hpy166II GTNNAC 2 cut(s) 498, 1401
Hpy188I TCNGA 5 cut(s) 64, 261, 655, 1089, 1314
Hpy188III TCNNGA 8 cut(s) 166, 194, 241, 266, 320, 1100, 1263, 1461
Hpy8I GTNNAC 2 cut(s) 498, 1401
Hpy99I CGWCG 1 cut(s) 655
HpyCH4III ACNGT 3 cut(s) 133, 877, 1053
HpyCH4IV ACGT 2 cut(s) 650, 757
HpyCH4V TGCA 7 cut(s) 761, 881, 887, 1031, 1205, 1331, 1478
HpyF10VI GCNNNNNNNGC 3 cut(s) 462, 1249, 1449
HpyF3I CTNAG 3 cut(s) 1088, 1311, 1410
HpySE526I ACGT 2 cut(s) 650, 757
Hsp92II CATG 5 cut(s) 818, 904, 1065, 1158, 1448
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 478
LmnI GCTCC 1 cut(s) 213
Lsp1109I GCAGC 3 cut(s) 1189, 1294, 1462
LweI GCATC 3 cut(s) 259, 838, 1461
MabI ACCWGGT 1 cut(s) 1033
MaeI CTAG 4 cut(s) 438, 666, 1263, 1449
MaeII ACGT 2 cut(s) 650, 757
MaeIII GTNAC 3 cut(s) 307, 471, 1376
MbiI CCGCTC 1 cut(s) 292
MfeI CAATTG 1 cut(s) 1332
MflI RGATCY 2 cut(s) 1096, 1149
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 9 cut(s) 57, 88, 380, 700, 789, 1071, 1211, 1229, 1332
MlyI GAGTC 1 cut(s) 949
MmeI TCCRAC 2 cut(s) 633, 1074
MroXI GAANNNNTTC 1 cut(s) 1365
MseI TTAA 2 cut(s) 600, 792
MspI CCGG 4 cut(s) 211, 254, 398, 423
MspR9I CCNGG 9 cut(s) 15, 212, 254, 342, 398, 399, 835, 1035, 1395
MunI CAATTG 1 cut(s) 1332
Mva1269I GAATGC 1 cut(s) 1333
MvaI CCWGG 5 cut(s) 15, 342, 835, 1035, 1395
MvnI CGCG 4 cut(s) 161, 249, 297, 808
MwoI GCNNNNNNNGC 3 cut(s) 462, 1249, 1449
NciI CCSGG 4 cut(s) 212, 254, 398, 399
NcoI CCATGG 1 cut(s) 814
NdeI CATATG 1 cut(s) 151
NheI GCTAGC 1 cut(s) 1448
NlaIII CATG 5 cut(s) 818, 904, 1065, 1158, 1448
NlaIV GGNNCC 3 cut(s) 215, 738, 1151
NmeAIII GCCGAG 1 cut(s) 883
NmuCI GTSAC 1 cut(s) 471
NspV TTCGAA 2 cut(s) 407, 524
PaeR7I CTCGAG 1 cut(s) 1100
PaqCI CACCTGC 1 cut(s) 872
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 228
PctI GAATGC 1 cut(s) 1333
PdmI GAANNNNTTC 1 cut(s) 1365
PfeI GAWTC 4 cut(s) 262, 810, 830, 1046
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 7 cut(s) 160, 294, 443, 663, 1204, 1309, 1477
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 1 cut(s) 949
PpsI GAGTC 1 cut(s) 949
PshBI ATTAAT 1 cut(s) 792
Psp6I CCWGG 5 cut(s) 13, 340, 833, 1033, 1393
PspGI CCWGG 5 cut(s) 13, 340, 833, 1033, 1393
PspN4I GGNNCC 3 cut(s) 215, 738, 1151
PspPI GGNCC 4 cut(s) 133, 214, 736, 1136
PsuI RGATCY 2 cut(s) 1096, 1149
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 2 cut(s) 670, 713
RsaNI GTAC 2 cut(s) 669, 712
SaqAI TTAA 2 cut(s) 600, 792
SatI GCNGC 7 cut(s) 159, 293, 442, 662, 1203, 1308, 1476
Sau96I GGNCC 4 cut(s) 133, 214, 736, 1136
SchI GAGTC 1 cut(s) 949
ScrFI CCNGG 9 cut(s) 15, 212, 254, 342, 398, 399, 835, 1035, 1395
SduI GDGCHC 1 cut(s) 467
SexAI ACCWGGT 1 cut(s) 1033
SfaNI GCATC 3 cut(s) 259, 838, 1461
Sfr274I CTCGAG 1 cut(s) 1100
SfuI TTCGAA 2 cut(s) 407, 524
SinI GGWCC 2 cut(s) 133, 214
SlaI CTCGAG 1 cut(s) 1100
SmaI CCCGGG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 1100
SmoI CTYRAG 1 cut(s) 1100
Sse9I AATT 9 cut(s) 57, 88, 380, 700, 789, 1071, 1211, 1229, 1332
SspI AATATT 1 cut(s) 529
SspMI CTAG 4 cut(s) 438, 666, 1263, 1449
StyD4I CCNGG 9 cut(s) 13, 210, 252, 340, 396, 397, 833, 1033, 1393
StyI CCWWGG 2 cut(s) 814, 1499
TaaI ACNGT 3 cut(s) 133, 877, 1053
TaiI ACGT 2 cut(s) 653, 760
TasI AATT 9 cut(s) 57, 88, 380, 700, 789, 1071, 1211, 1229, 1332
TatI WGTACW 1 cut(s) 668
TauI GCSGC 4 cut(s) 161, 295, 444, 664
TfiI GAWTC 4 cut(s) 262, 810, 830, 1046
Tru1I TTAA 2 cut(s) 600, 792
Tru9I TTAA 2 cut(s) 600, 792
TscAI CASTG 1 cut(s) 1279
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 3 cut(s) 1202, 1307, 1475
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 6 cut(s) 156, 393, 785, 1059, 1188, 1374
TspGWI ACGGA 2 cut(s) 593, 995
TspMI CCCGGG 1 cut(s) 397
TspRI CASTG 1 cut(s) 1279
VpaK11BI GGWCC 2 cut(s) 133, 214
VspI ATTAAT 1 cut(s) 792
XagI CCTNNNNNAGG 2 cut(s) 1032, 1263
XapI RAATTY 3 cut(s) 88, 380, 700
XbaI TCTAGA 1 cut(s) 1262
XhoI CTCGAG 1 cut(s) 1100
XmaI CCCGGG 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 1365
XspI CTAG 4 cut(s) 438, 666, 1263, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.