Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017151

Physical Location & Seq

Genomic Coordinates Reverse (-)

2615426 .. 2616934

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTCGTTGGTATGGTTGGAAGCGATGTTGCCTCTCGGAATCATCGGTGGGATGCTCTGTATCATGGGCAATTCTCAGTACTACATCCACAAAGCTTATCATGGCCGTCCTAAGCACATCGGCCACGATGAATGGGATGTTGCTATGGAAAGACGCGACAAGAAAGTCGTCGAGAAAGCTGCAGCTCCTTCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

MWFE

Protein Analysis

65

Amino Acids

7.34

Weight (kDa)

7.94

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MWFE	PF15879	5 - 56	2.7e-15	NADH-ubiquinone oxidoreductase MWFE subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08610
fragaria_vesca	FvH4_6g09420
malus_domestica	MD04G1177900.v1.1 MD12G1193500.v1.1
prunus_persica	Prupe.6G297800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459881
rosa_multiflora	Rmu_co8074100.1_g000001 Rmu_sc0000240.1_g000043
rosa_roxburghii	Rroxscaffold_6G00419940
rosa_rugosa	Rorug03G0038100 Rorug03G0038200.1 Rorug03G0038300.1 Rorug03G0038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccII	CGCG	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	103, 121
AfaI	GTAC	1 cut(s)	80
AluBI	AGCT	3 cut(s)	95, 179, 185
AluI	AGCT	3 cut(s)	95, 179, 185
AoxI	GGCC	2 cut(s)	103, 121
ApeKI	GCWGC	2 cut(s)	179, 182
BbvI	GCAGC	2 cut(s)	166, 194
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	180, 183
BlsI	GCNGC	2 cut(s)	181, 184
BmcAI	AGTACT	1 cut(s)	80
BmsI	GCATC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	111
BseGI	GGATG	3 cut(s)	57, 84, 142
BseMII	CTCAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	166, 194
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	105, 123
BsnI	GGCC	2 cut(s)	105, 123
BspANI	GGCC	2 cut(s)	105, 123
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	194
BspMAI	CTGCAG	1 cut(s)	184
BstDEI	CTNAG	2 cut(s)	75, 111
BstF5I	GGATG	3 cut(s)	57, 84, 142
BstFNI	CGCG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	166, 194
BsuRI	GGCC	2 cut(s)	105, 123
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	57, 84, 142
CciI	TCATGA	1 cut(s)	194
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	3 cut(s)	64, 101, 195
CviJI	RGCY	5 cut(s)	95, 105, 123, 179, 185
CviKI_1	RGCY	5 cut(s)	95, 105, 123, 179, 185
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	75, 111
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	2 cut(s)	103, 121
FaeI	CATG	3 cut(s)	67, 104, 198
FaiI	YATR	5 cut(s)	13, 65, 102, 146, 196
FatI	CATG	3 cut(s)	63, 100, 194
Fnu4HI	GCNGC	2 cut(s)	180, 183
FokI	GGATG	3 cut(s)	64, 71, 149
Fsp4HI	GCNGC	2 cut(s)	180, 183
GluI	GCNGC	2 cut(s)	180, 183
HaeIII	GGCC	2 cut(s)	105, 123
HgaI	GACGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	67, 104, 198
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	2 cut(s)	172, 195
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	75, 111
Hsp92II	CATG	3 cut(s)	67, 104, 198
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	166, 194
LweI	GCATC	1 cut(s)	42
MluCI	AATT	1 cut(s)	70
MnlI	CCTC	1 cut(s)	42
MvnI	CGCG	1 cut(s)	156
NlaIII	CATG	3 cut(s)	67, 104, 198
PagI	TCATGA	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	181, 184
PstI	CTGCAG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	2 cut(s)	180, 183
ScaI	AGTACT	1 cut(s)	80
SetI	ASST	3 cut(s)	97, 181, 187
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	180
SgeI	CNNG	7 cut(s)	47, 76, 113, 137, 167, 172, 184
Sse9I	AATT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	70
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	39
TseI	GCWGC	2 cut(s)	179, 182
TspDTI	ATGAA	1 cut(s)	144
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.