Rmu_co8074100.1_g000001

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8074100.1
OG0017151
Physical Location & Seq
Reverse (-)
172 .. 478
307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8074100.1_g000001.1.cds

Sequence Viewer

Length: 204 bp
atgtcgctggtatggatggaagcgatgcttccgctcggaatcatcgccggaatgctgtgcgtgatgggaaatgctcagtactatattcacagagccgcgcatggccggccgaagcatatcggaaacgacatgtgggatgtggccatggaaagaagggacaagaagctcatcgagcaggccactgctccttcttcttctaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
MWFE

Protein Analysis

67

Amino Acids

7.51

Weight (kDa)

7.96

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08610
fragaria_vesca FvH4_6g09420
malus_domestica MD04G1177900.v1.1 MD12G1193500.v1.1
prunus_persica Prupe.6G297800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459881
rosa_multiflora Rmu_co8074100.1_g000001 Rmu_sc0000240.1_g000043
rosa_roxburghii Rroxscaffold_6G00419940
rosa_rugosa Rorug03G0038100 Rorug03G0038200.1 Rorug03G0038300.1 Rorug03G0038400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 34
AccII CGCG 1 cut(s) 98
AciI CCGC 2 cut(s) 32, 96
AcoI YGGCCR 3 cut(s) 103, 107, 141
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 129
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AoxI GGCC 4 cut(s) 103, 107, 141, 177
AspLEI GCGC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 143
BccI CCATC 2 cut(s) 10, 58
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 80
BmsI GCATC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 21, 142
BseMII CTCAG 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 4 cut(s) 105, 109, 143, 179
BsiEI CGRYCG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 48, 106
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 4 cut(s) 105, 109, 143, 179
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 2 cut(s) 32, 96
BspANI GGCC 4 cut(s) 105, 109, 143, 179
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 107, 177
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 21, 142
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 100
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 2 cut(s) 106, 172
BstNSI RCATGY 1 cut(s) 133
BstUI CGCG 1 cut(s) 98
BstZI CGGCCG 1 cut(s) 107
BsuRI GGCC 4 cut(s) 105, 109, 143, 179
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 2 cut(s) 28, 38
BtsCI GGATG 2 cut(s) 21, 142
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 107, 177
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 105
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 101, 130, 145
CviJI RGCY 6 cut(s) 95, 105, 109, 143, 166, 179
CviKI_1 RGCY 6 cut(s) 95, 105, 109, 143, 166, 179
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 75
EaeI YGGCCR 3 cut(s) 103, 107, 141
EagI CGGCCG 1 cut(s) 107
EclXI CGGCCG 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 144
Eco52I CGGCCG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 104, 133, 148
FaiI YATR 6 cut(s) 13, 84, 102, 117, 131, 146
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 100, 129, 144
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 28, 149
FseI GGCCGGCC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 4 cut(s) 105, 109, 143, 179
HapII CCGG 2 cut(s) 48, 106
HhaI GCGC 1 cut(s) 100
Hin1II CATG 3 cut(s) 104, 133, 148
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 39
HpaII CCGG 2 cut(s) 48, 106
Hpy188I TCNGA 2 cut(s) 38, 122
HpyAV CCTTC 2 cut(s) 147, 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 172
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 3 cut(s) 104, 133, 148
HspAI GCGC 1 cut(s) 98
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 61, 119, 161
LweI GCATC 1 cut(s) 15
MbiI CCGCTC 1 cut(s) 34
MboII GAAGA 2 cut(s) 183, 186
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 1 cut(s) 199
MluNI TGGCCA 1 cut(s) 143
Mox20I TGGCCA 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 2 cut(s) 48, 106
Mva1269I GAATGC 1 cut(s) 57
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 106, 172
NaeI GCCGGC 1 cut(s) 107
NcoI CCATGG 1 cut(s) 144
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 3 cut(s) 104, 133, 148
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PctI GAATGC 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 97
PscI ACATGT 1 cut(s) 129
RigI GGCCGGCC 1 cut(s) 109
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SatI GCNGC 1 cut(s) 96
ScaI AGTACT 1 cut(s) 80
SetI ASST 1 cut(s) 168
SfaNI GCATC 1 cut(s) 15
Sse9I AATT 1 cut(s) 199
SsiI CCGC 2 cut(s) 32, 96
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 1 cut(s) 171
TasI AATT 1 cut(s) 199
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 39
TscAI CASTG 1 cut(s) 187
TspRI CASTG 1 cut(s) 187
XceI RCATGY 1 cut(s) 133
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.