MD04G1177900.v1.1

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0017151
Physical Location & Seq
Forward (+)
26898391 .. 26900781
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1177900.v1.1.491

Sequence Viewer

Length: 231 bp
ATGTCGCTGGTATGGATGGAAGCACTACTTCCTCTCGGAATCATAGCCGGAATGCTCTGCGTCATGGGGAATGCTCAGTATTACATTCACAAAGCCGCCCACGGCCGGCCGAAGCACATCGGGAACGACATGTGGGACGTGGCCATGGAGAGAAGGGACAAGAAGCTCGTGGAGCAGGCGTTTGCCCATATCCAGAAGAACCGTTGTGAATGGAATTTCGAGAAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
MWFE

Protein Analysis

77

Amino Acids

8.87

Weight (kDa)

8.69

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MWFE PF15879 5 - 56 7.1e-16 NADH-ubiquinone oxidoreductase MWFE subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08610
fragaria_vesca FvH4_6g09420
malus_domestica MD04G1177900.v1.1 MD12G1193500.v1.1
prunus_persica Prupe.6G297800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459881
rosa_multiflora Rmu_co8074100.1_g000001 Rmu_sc0000240.1_g000043
rosa_roxburghii Rroxscaffold_6G00419940
rosa_rugosa Rorug03G0038100 Rorug03G0038200.1 Rorug03G0038300.1 Rorug03G0038400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 3 cut(s) 103, 107, 141
AcsI RAATTY 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 129
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AoxI GGCC 3 cut(s) 103, 107, 141
ApoI RAATTY 1 cut(s) 214
BalI TGGCCA 1 cut(s) 143
BauI CACGAG 1 cut(s) 167
BccI CCATC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 118
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 100, 144
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 100, 144
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 89
BseX3I CGGCCG 2 cut(s) 103, 107
Bsh1285I CGRYCG 2 cut(s) 106, 110
BshFI GGCC 3 cut(s) 105, 109, 143
BsiEI CGRYCG 2 cut(s) 106, 110
BsiSI CCGG 2 cut(s) 48, 106
BslFI GGGAC 2 cut(s) 149, 170
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 2 cut(s) 149, 170
BsmI GAATGC 2 cut(s) 57, 76
BsnI GGCC 3 cut(s) 105, 109, 143
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 1 cut(s) 96
BspANI GGCC 3 cut(s) 105, 109, 143
BspCNI CTCAG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 100, 144
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 107, 177
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 2 cut(s) 100, 144
BstF5I GGATG 1 cut(s) 21
BstMCI CGRYCG 2 cut(s) 106, 110
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 133
BstZI CGGCCG 2 cut(s) 103, 107
BsuRI GGCC 3 cut(s) 105, 109, 143
BtgI CCRYGG 2 cut(s) 100, 144
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 107, 177
Cfr10I RCCGGY 1 cut(s) 105
CseI GACGC 1 cut(s) 49
CviAII CATG 3 cut(s) 64, 130, 145
CviJI RGCY 6 cut(s) 47, 95, 105, 109, 143, 166
CviKI_1 RGCY 6 cut(s) 47, 95, 105, 109, 143, 166
DdeI CTNAG 1 cut(s) 75
EaeI YGGCCR 3 cut(s) 103, 107, 141
EagI CGGCCG 2 cut(s) 103, 107
EclXI CGGCCG 2 cut(s) 103, 107
Eco130I CCWWGG 1 cut(s) 144
Eco52I CGGCCG 2 cut(s) 103, 107
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 67, 133, 148
FaiI YATR 6 cut(s) 13, 44, 65, 131, 146, 189
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 2 cut(s) 149, 170
FatI CATG 3 cut(s) 63, 129, 144
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 28
FseI GGCCGGCC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 3 cut(s) 105, 109, 143
HapII CCGG 2 cut(s) 48, 106
HgaI GACGC 1 cut(s) 49
Hin1II CATG 3 cut(s) 67, 133, 148
HinfI GANTC 1 cut(s) 39
HpaII CCGG 2 cut(s) 48, 106
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 121, 193, 220
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 3 cut(s) 67, 133, 148
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 61, 119, 161, 206
MaeII ACGT 1 cut(s) 138
MboII GAAGA 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 143
MnlI CCTC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 2 cut(s) 48, 106
Mva1269I GAATGC 2 cut(s) 57, 76
MwoI GCNNNNNNNGC 1 cut(s) 172
NaeI GCCGGC 1 cut(s) 107
NcoI CCATGG 1 cut(s) 144
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 3 cut(s) 67, 133, 148
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PctI GAATGC 2 cut(s) 57, 76
PdiI GCCGGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 97
PscI ACATGT 1 cut(s) 129
RigI GGCCGGCC 1 cut(s) 109
SatI GCNGC 1 cut(s) 96
SetI ASST 2 cut(s) 141, 168
Sse9I AATT 1 cut(s) 214
SsiI CCGC 1 cut(s) 96
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 214
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 39
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.